data_6V16 # _model_server_result.job_id tPYqXCwyh8CBHGEYYCtV8g _model_server_result.datetime_utc '2024-12-26 16:18:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 6V16 # _exptl.entry_id 6V16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.45 _cell.angle_gamma 90 _cell.entry_id 6V16 _cell.length_a 47.084 _cell.length_b 33.497 _cell.length_c 76.561 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6V16 _atom_sites.fract_transf_matrix[1][1] 0.021239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003155 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QMG A 1 301 2 QMG LIG . D 3 EDO A 1 302 1 EDO EDO . E 2 QMG B 1 301 1 QMG LIG . F 4 HEZ B 1 302 1 HEZ HEZ . G 5 GOL B 1 303 1 GOL GOL . H 6 HOH A 1 401 48 HOH HOH . H 6 HOH A 2 402 153 HOH HOH . H 6 HOH A 3 403 133 HOH HOH . H 6 HOH A 4 404 73 HOH HOH . H 6 HOH A 5 405 52 HOH HOH . H 6 HOH A 6 406 77 HOH HOH . H 6 HOH A 7 407 4 HOH HOH . H 6 HOH A 8 408 118 HOH HOH . H 6 HOH A 9 409 79 HOH HOH . H 6 HOH A 10 410 84 HOH HOH . H 6 HOH A 11 411 51 HOH HOH . H 6 HOH A 12 412 46 HOH HOH . H 6 HOH A 13 413 32 HOH HOH . H 6 HOH A 14 414 31 HOH HOH . H 6 HOH A 15 415 2 HOH HOH . H 6 HOH A 16 416 93 HOH HOH . H 6 HOH A 17 417 53 HOH HOH . H 6 HOH A 18 418 110 HOH HOH . H 6 HOH A 19 419 149 HOH HOH . H 6 HOH A 20 420 113 HOH HOH . H 6 HOH A 21 421 139 HOH HOH . H 6 HOH A 22 422 96 HOH HOH . H 6 HOH A 23 423 147 HOH HOH . H 6 HOH A 24 424 97 HOH HOH . H 6 HOH A 25 425 68 HOH HOH . H 6 HOH A 26 426 70 HOH HOH . H 6 HOH A 27 427 15 HOH HOH . H 6 HOH A 28 428 56 HOH HOH . H 6 HOH A 29 429 120 HOH HOH . H 6 HOH A 30 430 107 HOH HOH . H 6 HOH A 31 431 103 HOH HOH . H 6 HOH A 32 432 123 HOH HOH . H 6 HOH A 33 433 58 HOH HOH . H 6 HOH A 34 434 127 HOH HOH . H 6 HOH A 35 435 99 HOH HOH . H 6 HOH A 36 436 11 HOH HOH . H 6 HOH A 37 437 7 HOH HOH . H 6 HOH A 38 438 155 HOH HOH . H 6 HOH A 39 439 111 HOH HOH . H 6 HOH A 40 440 106 HOH HOH . H 6 HOH A 41 441 6 HOH HOH . H 6 HOH A 42 442 24 HOH HOH . H 6 HOH A 43 443 45 HOH HOH . H 6 HOH A 44 444 25 HOH HOH . H 6 HOH A 45 445 26 HOH HOH . H 6 HOH A 46 446 9 HOH HOH . H 6 HOH A 47 447 55 HOH HOH . H 6 HOH A 48 448 27 HOH HOH . H 6 HOH A 49 449 126 HOH HOH . H 6 HOH A 50 450 44 HOH HOH . H 6 HOH A 51 451 54 HOH HOH . H 6 HOH A 52 452 42 HOH HOH . H 6 HOH A 53 453 8 HOH HOH . H 6 HOH A 54 454 114 HOH HOH . H 6 HOH A 55 455 50 HOH HOH . H 6 HOH A 56 456 38 HOH HOH . H 6 HOH A 57 457 57 HOH HOH . H 6 HOH A 58 458 104 HOH HOH . H 6 HOH A 59 459 63 HOH HOH . H 6 HOH A 60 460 92 HOH HOH . H 6 HOH A 61 461 43 HOH HOH . H 6 HOH A 62 462 116 HOH HOH . H 6 HOH A 63 463 98 HOH HOH . H 6 HOH A 64 464 74 HOH HOH . H 6 HOH A 65 465 16 HOH HOH . H 6 HOH A 66 466 29 HOH HOH . H 6 HOH A 67 467 135 HOH HOH . H 6 HOH A 68 468 109 HOH HOH . H 6 HOH A 69 469 94 HOH HOH . H 6 HOH A 70 470 156 HOH HOH . H 6 HOH A 71 471 105 HOH HOH . H 6 HOH A 72 472 82 HOH HOH . H 6 HOH A 73 473 108 HOH HOH . H 6 HOH A 74 474 152 HOH HOH . H 6 HOH A 75 475 131 HOH HOH . H 6 HOH A 76 476 33 HOH HOH . H 6 HOH A 77 477 30 HOH HOH . H 6 HOH A 78 478 137 HOH HOH . H 6 HOH A 79 479 132 HOH HOH . H 6 HOH A 80 480 145 HOH HOH . H 6 HOH A 81 481 34 HOH HOH . H 6 HOH A 82 482 148 HOH HOH . H 6 HOH A 83 483 151 HOH HOH . H 6 HOH A 84 484 128 HOH HOH . H 6 HOH A 85 485 102 HOH HOH . H 6 HOH A 86 486 75 HOH HOH . H 6 HOH A 87 487 61 HOH HOH . H 6 HOH A 88 488 89 HOH HOH . H 6 HOH A 89 489 67 HOH HOH . H 6 HOH A 90 490 86 HOH HOH . H 6 HOH A 91 491 142 HOH HOH . H 6 HOH A 92 492 121 HOH HOH . I 6 HOH B 1 401 22 HOH HOH . I 6 HOH B 2 402 1 HOH HOH . I 6 HOH B 3 403 49 HOH HOH . I 6 HOH B 4 404 144 HOH HOH . I 6 HOH B 5 405 3 HOH HOH . I 6 HOH B 6 406 87 HOH HOH . I 6 HOH B 7 407 62 HOH HOH . I 6 HOH B 8 408 18 HOH HOH . I 6 HOH B 9 409 76 HOH HOH . I 6 HOH B 10 410 17 HOH HOH . I 6 HOH B 11 411 20 HOH HOH . I 6 HOH B 12 412 47 HOH HOH . I 6 HOH B 13 413 154 HOH HOH . I 6 HOH B 14 414 14 HOH HOH . I 6 HOH B 15 415 28 HOH HOH . I 6 HOH B 16 416 13 HOH HOH . I 6 HOH B 17 417 66 HOH HOH . I 6 HOH B 18 418 81 HOH HOH . I 6 HOH B 19 419 35 HOH HOH . I 6 HOH B 20 420 65 HOH HOH . I 6 HOH B 21 421 95 HOH HOH . I 6 HOH B 22 422 124 HOH HOH . I 6 HOH B 23 423 10 HOH HOH . I 6 HOH B 24 424 64 HOH HOH . I 6 HOH B 25 425 5 HOH HOH . I 6 HOH B 26 426 37 HOH HOH . I 6 HOH B 27 427 39 HOH HOH . I 6 HOH B 28 428 112 HOH HOH . I 6 HOH B 29 429 36 HOH HOH . I 6 HOH B 30 430 91 HOH HOH . I 6 HOH B 31 431 141 HOH HOH . I 6 HOH B 32 432 125 HOH HOH . I 6 HOH B 33 433 23 HOH HOH . I 6 HOH B 34 434 115 HOH HOH . I 6 HOH B 35 435 129 HOH HOH . I 6 HOH B 36 436 60 HOH HOH . I 6 HOH B 37 437 40 HOH HOH . I 6 HOH B 38 438 136 HOH HOH . I 6 HOH B 39 439 41 HOH HOH . I 6 HOH B 40 440 138 HOH HOH . I 6 HOH B 41 441 159 HOH HOH . I 6 HOH B 42 442 21 HOH HOH . I 6 HOH B 43 443 117 HOH HOH . I 6 HOH B 44 444 72 HOH HOH . I 6 HOH B 45 445 122 HOH HOH . I 6 HOH B 46 446 134 HOH HOH . I 6 HOH B 47 447 150 HOH HOH . I 6 HOH B 48 448 80 HOH HOH . I 6 HOH B 49 449 146 HOH HOH . I 6 HOH B 50 450 12 HOH HOH . I 6 HOH B 51 451 88 HOH HOH . I 6 HOH B 52 452 101 HOH HOH . I 6 HOH B 53 453 69 HOH HOH . I 6 HOH B 54 454 19 HOH HOH . I 6 HOH B 55 455 83 HOH HOH . I 6 HOH B 56 456 85 HOH HOH . I 6 HOH B 57 457 78 HOH HOH . I 6 HOH B 58 458 143 HOH HOH . I 6 HOH B 59 459 140 HOH HOH . I 6 HOH B 60 460 90 HOH HOH . I 6 HOH B 61 461 71 HOH HOH . I 6 HOH B 62 462 59 HOH HOH . I 6 HOH B 63 463 130 HOH HOH . I 6 HOH B 64 464 158 HOH HOH . I 6 HOH B 65 465 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 76.794 8.446 117.828 1 74.19 ? C1 GOL 303 B 1 HETATM 2 O O1 GOL . . . G 5 76.232 7.2 117.552 1 73.21 ? O1 GOL 303 B 1 HETATM 3 C C2 GOL . . . G 5 75.663 9.344 118.392 1 73.04 ? C2 GOL 303 B 1 HETATM 4 O O2 GOL . . . G 5 74.842 9.842 117.389 1 73.71 ? O2 GOL 303 B 1 HETATM 5 C C3 GOL . . . G 5 74.895 8.44 119.386 1 71.65 ? C3 GOL 303 B 1 HETATM 6 O O3 GOL . . . G 5 74.121 9.283 120.181 1 69.8 ? O3 GOL 303 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #