data_6V18
#
_model_server_result.job_id            diSaVDytKukHKwMTMNzr5Q 
_model_server_result.datetime_utc      '2024-11-16 13:43:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v18 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":304}' 
#
_entry.id    6V18 
#
_exptl.entry_id    6V18 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.354 
_cell.angle_gamma         90 
_cell.entry_id            6V18 
_cell.length_a            147.878 
_cell.length_b            56.266 
_cell.length_c            128.915 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V18 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
? 7 S N N 
? 7 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 92 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 D SG CYS 138 D CYS 150 1_555 D SG CYS 188 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 D SG CYS 163 D CYS 175 1_555 E SG CYS 169 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 E SG CYS 21 E CYS 23 1_555 E SG CYS 89 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 E SG CYS 143 E CYS 158 1_555 E SG CYS 208 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
covale ? covale1 A ND2 ASN 118 A ASN 118 1_555 F C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale2 B ND2 ASN 19 B ASN 19 1_555 I C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale3 C C ALA 5 C ALA 73 1_555 C N CIR 6 C CIR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
covale ? covale4 C C CIR 6 C CIR 74 1_555 C N PRO 7 C PRO 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     6V18 
_atom_sites.fract_transf_matrix[1][1]    0.006762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00016 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017773 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 201 181 NAG NAG . 
G 7 GOL A 1 202 201 GOL GOL . 
H 7 GOL A 1 203 301 GOL GOL . 
I 6 NAG B 1 201 189 NAG NAG . 
J 7 GOL B 1 202 201 GOL GOL . 
K 7 GOL B 1 203 514 GOL GOL . 
L 7 GOL D 1 301 313 GOL GOL . 
M 7 GOL D 1 302 413 GOL GOL . 
N 7 GOL D 1 303 513 GOL GOL . 
O 7 GOL D 1 304 613 GOL GOL . 
P 7 GOL D 1 305 813 GOL GOL . 
Q 7 GOL E 1 301 314 GOL GOL . 
R 7 GOL E 1 302 714 GOL GOL . 
S 7 GOL E 1 303 814 GOL GOL . 
T 7 GOL E 1 304 914 GOL GOL . 
U 8 HOH A 1 301 17 HOH HOH . 
U 8 HOH A 2 302 120 HOH HOH . 
U 8 HOH A 3 303 83 HOH HOH . 
U 8 HOH A 4 304 90 HOH HOH . 
U 8 HOH A 5 305 41 HOH HOH . 
U 8 HOH A 6 306 142 HOH HOH . 
U 8 HOH A 7 307 20 HOH HOH . 
U 8 HOH A 8 308 56 HOH HOH . 
U 8 HOH A 9 309 132 HOH HOH . 
U 8 HOH A 10 310 80 HOH HOH . 
U 8 HOH A 11 311 75 HOH HOH . 
U 8 HOH A 12 312 77 HOH HOH . 
U 8 HOH A 13 313 131 HOH HOH . 
U 8 HOH A 14 314 181 HOH HOH . 
U 8 HOH A 15 315 155 HOH HOH . 
U 8 HOH A 16 316 147 HOH HOH . 
V 8 HOH B 1 301 58 HOH HOH . 
V 8 HOH B 2 302 133 HOH HOH . 
V 8 HOH B 3 303 69 HOH HOH . 
V 8 HOH B 4 304 125 HOH HOH . 
V 8 HOH B 5 305 85 HOH HOH . 
V 8 HOH B 6 306 92 HOH HOH . 
V 8 HOH B 7 307 86 HOH HOH . 
V 8 HOH B 8 308 78 HOH HOH . 
V 8 HOH B 9 309 51 HOH HOH . 
V 8 HOH B 10 310 149 HOH HOH . 
V 8 HOH B 11 311 143 HOH HOH . 
V 8 HOH B 12 312 103 HOH HOH . 
V 8 HOH B 13 313 150 HOH HOH . 
V 8 HOH B 14 314 123 HOH HOH . 
V 8 HOH B 15 315 168 HOH HOH . 
V 8 HOH B 16 316 156 HOH HOH . 
V 8 HOH B 17 317 144 HOH HOH . 
V 8 HOH B 18 318 153 HOH HOH . 
V 8 HOH B 19 319 121 HOH HOH . 
W 8 HOH C 1 101 84 HOH HOH . 
W 8 HOH C 2 102 67 HOH HOH . 
W 8 HOH C 3 103 180 HOH HOH . 
W 8 HOH C 4 104 134 HOH HOH . 
W 8 HOH C 5 105 2 HOH HOH . 
W 8 HOH C 6 106 4 HOH HOH . 
W 8 HOH C 7 107 148 HOH HOH . 
X 8 HOH D 1 401 166 HOH HOH . 
X 8 HOH D 2 402 30 HOH HOH . 
X 8 HOH D 3 403 95 HOH HOH . 
X 8 HOH D 4 404 11 HOH HOH . 
X 8 HOH D 5 405 8 HOH HOH . 
X 8 HOH D 6 406 111 HOH HOH . 
X 8 HOH D 7 407 14 HOH HOH . 
X 8 HOH D 8 408 15 HOH HOH . 
X 8 HOH D 9 409 7 HOH HOH . 
X 8 HOH D 10 410 24 HOH HOH . 
X 8 HOH D 11 411 116 HOH HOH . 
X 8 HOH D 12 412 105 HOH HOH . 
X 8 HOH D 13 413 50 HOH HOH . 
X 8 HOH D 14 414 94 HOH HOH . 
X 8 HOH D 15 415 163 HOH HOH . 
X 8 HOH D 16 416 18 HOH HOH . 
X 8 HOH D 17 417 33 HOH HOH . 
X 8 HOH D 18 418 10 HOH HOH . 
X 8 HOH D 19 419 1 HOH HOH . 
X 8 HOH D 20 420 42 HOH HOH . 
X 8 HOH D 21 421 122 HOH HOH . 
X 8 HOH D 22 422 109 HOH HOH . 
X 8 HOH D 23 423 9 HOH HOH . 
X 8 HOH D 24 424 55 HOH HOH . 
X 8 HOH D 25 425 126 HOH HOH . 
X 8 HOH D 26 426 44 HOH HOH . 
X 8 HOH D 27 427 146 HOH HOH . 
X 8 HOH D 28 428 28 HOH HOH . 
X 8 HOH D 29 429 82 HOH HOH . 
X 8 HOH D 30 430 108 HOH HOH . 
X 8 HOH D 31 431 22 HOH HOH . 
X 8 HOH D 32 432 136 HOH HOH . 
X 8 HOH D 33 433 60 HOH HOH . 
X 8 HOH D 34 434 52 HOH HOH . 
X 8 HOH D 35 435 21 HOH HOH . 
X 8 HOH D 36 436 57 HOH HOH . 
X 8 HOH D 37 437 102 HOH HOH . 
X 8 HOH D 38 438 46 HOH HOH . 
X 8 HOH D 39 439 43 HOH HOH . 
X 8 HOH D 40 440 96 HOH HOH . 
X 8 HOH D 41 441 165 HOH HOH . 
X 8 HOH D 42 442 64 HOH HOH . 
X 8 HOH D 43 443 61 HOH HOH . 
X 8 HOH D 44 444 101 HOH HOH . 
X 8 HOH D 45 445 23 HOH HOH . 
X 8 HOH D 46 446 135 HOH HOH . 
X 8 HOH D 47 447 107 HOH HOH . 
X 8 HOH D 48 448 141 HOH HOH . 
X 8 HOH D 49 449 145 HOH HOH . 
X 8 HOH D 50 450 25 HOH HOH . 
X 8 HOH D 51 451 70 HOH HOH . 
X 8 HOH D 52 452 161 HOH HOH . 
X 8 HOH D 53 453 39 HOH HOH . 
X 8 HOH D 54 454 169 HOH HOH . 
X 8 HOH D 55 455 117 HOH HOH . 
X 8 HOH D 56 456 119 HOH HOH . 
X 8 HOH D 57 457 167 HOH HOH . 
X 8 HOH D 58 458 59 HOH HOH . 
X 8 HOH D 59 459 178 HOH HOH . 
X 8 HOH D 60 460 26 HOH HOH . 
X 8 HOH D 61 461 99 HOH HOH . 
X 8 HOH D 62 462 74 HOH HOH . 
X 8 HOH D 63 463 162 HOH HOH . 
X 8 HOH D 64 464 164 HOH HOH . 
X 8 HOH D 65 465 115 HOH HOH . 
X 8 HOH D 66 466 154 HOH HOH . 
Y 8 HOH E 1 401 138 HOH HOH . 
Y 8 HOH E 2 402 27 HOH HOH . 
Y 8 HOH E 3 403 32 HOH HOH . 
Y 8 HOH E 4 404 6 HOH HOH . 
Y 8 HOH E 5 405 68 HOH HOH . 
Y 8 HOH E 6 406 3 HOH HOH . 
Y 8 HOH E 7 407 48 HOH HOH . 
Y 8 HOH E 8 408 129 HOH HOH . 
Y 8 HOH E 9 409 36 HOH HOH . 
Y 8 HOH E 10 410 12 HOH HOH . 
Y 8 HOH E 11 411 62 HOH HOH . 
Y 8 HOH E 12 412 37 HOH HOH . 
Y 8 HOH E 13 413 54 HOH HOH . 
Y 8 HOH E 14 414 113 HOH HOH . 
Y 8 HOH E 15 415 91 HOH HOH . 
Y 8 HOH E 16 416 81 HOH HOH . 
Y 8 HOH E 17 417 53 HOH HOH . 
Y 8 HOH E 18 418 13 HOH HOH . 
Y 8 HOH E 19 419 38 HOH HOH . 
Y 8 HOH E 20 420 110 HOH HOH . 
Y 8 HOH E 21 421 45 HOH HOH . 
Y 8 HOH E 22 422 106 HOH HOH . 
Y 8 HOH E 23 423 35 HOH HOH . 
Y 8 HOH E 24 424 63 HOH HOH . 
Y 8 HOH E 25 425 139 HOH HOH . 
Y 8 HOH E 26 426 34 HOH HOH . 
Y 8 HOH E 27 427 31 HOH HOH . 
Y 8 HOH E 28 428 40 HOH HOH . 
Y 8 HOH E 29 429 19 HOH HOH . 
Y 8 HOH E 30 430 71 HOH HOH . 
Y 8 HOH E 31 431 66 HOH HOH . 
Y 8 HOH E 32 432 29 HOH HOH . 
Y 8 HOH E 33 433 16 HOH HOH . 
Y 8 HOH E 34 434 93 HOH HOH . 
Y 8 HOH E 35 435 72 HOH HOH . 
Y 8 HOH E 36 436 98 HOH HOH . 
Y 8 HOH E 37 437 47 HOH HOH . 
Y 8 HOH E 38 438 5 HOH HOH . 
Y 8 HOH E 39 439 97 HOH HOH . 
Y 8 HOH E 40 440 79 HOH HOH . 
Y 8 HOH E 41 441 76 HOH HOH . 
Y 8 HOH E 42 442 159 HOH HOH . 
Y 8 HOH E 43 443 175 HOH HOH . 
Y 8 HOH E 44 444 173 HOH HOH . 
Y 8 HOH E 45 445 73 HOH HOH . 
Y 8 HOH E 46 446 87 HOH HOH . 
Y 8 HOH E 47 447 100 HOH HOH . 
Y 8 HOH E 48 448 137 HOH HOH . 
Y 8 HOH E 49 449 114 HOH HOH . 
Y 8 HOH E 50 450 176 HOH HOH . 
Y 8 HOH E 51 451 124 HOH HOH . 
Y 8 HOH E 52 452 89 HOH HOH . 
Y 8 HOH E 53 453 171 HOH HOH . 
Y 8 HOH E 54 454 112 HOH HOH . 
Y 8 HOH E 55 455 140 HOH HOH . 
Y 8 HOH E 56 456 88 HOH HOH . 
Y 8 HOH E 57 457 172 HOH HOH . 
Y 8 HOH E 58 458 177 HOH HOH . 
Y 8 HOH E 59 459 179 HOH HOH . 
Y 8 HOH E 60 460 118 HOH HOH . 
Y 8 HOH E 61 461 65 HOH HOH . 
Y 8 HOH E 62 462 170 HOH HOH . 
Y 8 HOH E 63 463 130 HOH HOH . 
Y 8 HOH E 64 464 151 HOH HOH . 
Y 8 HOH E 65 465 49 HOH HOH . 
Y 8 HOH E 66 466 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . T 7 -29.82 33.331 66.958 1 84.19 ? C1 GOL 304 E 1 
HETATM 2 O O1 GOL . . . T 7 -28.771 33.736 66.098 1 78.53 ? O1 GOL 304 E 1 
HETATM 3 C C2 GOL . . . T 7 -30.805 32.312 66.363 1 81.68 ? C2 GOL 304 E 1 
HETATM 4 O O2 GOL . . . T 7 -31.508 32.831 65.251 1 82.19 ? O2 GOL 304 E 1 
HETATM 5 C C3 GOL . . . T 7 -30.146 30.975 66.027 1 85.28 ? C3 GOL 304 E 1 
HETATM 6 O O3 GOL . . . T 7 -31.016 29.912 66.37 1 89.36 ? O3 GOL 304 E 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#