data_6V19
#
_model_server_result.job_id            2utN0pgBR84Oz7C0yJ0EAQ 
_model_server_result.datetime_utc      '2024-11-16 13:36:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v19 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":503}' 
#
_entry.id    6V19 
#
_exptl.entry_id    6V19 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.523 
_cell.angle_gamma         90 
_cell.entry_id            6V19 
_cell.length_a            149.462 
_cell.length_b            56.848 
_cell.length_c            129.762 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V19 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 92 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 138 D CYS 150 1_555 D SG CYS 188 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 D SG CYS 163 D CYS 175 1_555 E SG CYS 169 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 E SG CYS 21 E CYS 23 1_555 E SG CYS 89 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 E SG CYS 143 E CYS 158 1_555 E SG CYS 208 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 118 A ASN 118 1_555 F C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 C C TYR 3 C TYR 71 1_555 C N CIR 4 C CIR 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
covale ? covale3 C C CIR 4 C CIR 72 1_555 C N ALA 5 C ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 C C ALA 5 C ALA 73 1_555 C N CIR 6 C CIR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale5 C C CIR 6 C CIR 74 1_555 C N PRO 7 C PRO 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     6V19 
_atom_sites.fract_transf_matrix[1][1]    0.006691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000178 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007709 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 201 181 NAG NAG . 
G 7 GOL A 1 202 201 GOL GOL . 
H 7 GOL B 1 300 300 GOL GOL . 
I 7 GOL D 1 301 298 GOL GOL . 
J 7 GOL D 1 302 301 GOL GOL . 
K 7 GOL D 1 303 398 GOL GOL . 
L 7 GOL D 1 304 498 GOL GOL . 
M 7 GOL E 1 501 501 GOL GOL . 
N 7 GOL E 1 502 801 GOL GOL . 
O 7 GOL E 1 503 901 GOL GOL . 
P 8 HOH A 1 301 13 HOH HOH . 
Q 8 HOH B 1 401 34 HOH HOH . 
Q 8 HOH B 2 402 36 HOH HOH . 
Q 8 HOH B 3 403 72 HOH HOH . 
Q 8 HOH B 4 404 6 HOH HOH . 
Q 8 HOH B 5 405 43 HOH HOH . 
Q 8 HOH B 6 406 57 HOH HOH . 
Q 8 HOH B 7 407 73 HOH HOH . 
Q 8 HOH B 8 408 71 HOH HOH . 
Q 8 HOH B 9 409 56 HOH HOH . 
Q 8 HOH B 10 410 60 HOH HOH . 
Q 8 HOH B 11 411 59 HOH HOH . 
Q 8 HOH B 12 412 58 HOH HOH . 
R 8 HOH C 1 101 16 HOH HOH . 
R 8 HOH C 2 102 81 HOH HOH . 
S 8 HOH D 1 401 1 HOH HOH . 
S 8 HOH D 2 402 27 HOH HOH . 
S 8 HOH D 3 403 5 HOH HOH . 
S 8 HOH D 4 404 50 HOH HOH . 
S 8 HOH D 5 405 86 HOH HOH . 
S 8 HOH D 6 406 32 HOH HOH . 
S 8 HOH D 7 407 75 HOH HOH . 
S 8 HOH D 8 408 77 HOH HOH . 
S 8 HOH D 9 409 39 HOH HOH . 
S 8 HOH D 10 410 74 HOH HOH . 
S 8 HOH D 11 411 14 HOH HOH . 
S 8 HOH D 12 412 29 HOH HOH . 
S 8 HOH D 13 413 46 HOH HOH . 
S 8 HOH D 14 414 84 HOH HOH . 
S 8 HOH D 15 415 48 HOH HOH . 
S 8 HOH D 16 416 21 HOH HOH . 
S 8 HOH D 17 417 8 HOH HOH . 
S 8 HOH D 18 418 37 HOH HOH . 
S 8 HOH D 19 419 69 HOH HOH . 
S 8 HOH D 20 420 40 HOH HOH . 
S 8 HOH D 21 421 61 HOH HOH . 
S 8 HOH D 22 422 52 HOH HOH . 
S 8 HOH D 23 423 47 HOH HOH . 
S 8 HOH D 24 424 19 HOH HOH . 
S 8 HOH D 25 425 51 HOH HOH . 
T 8 HOH E 1 601 3 HOH HOH . 
T 8 HOH E 2 602 76 HOH HOH . 
T 8 HOH E 3 603 10 HOH HOH . 
T 8 HOH E 4 604 17 HOH HOH . 
T 8 HOH E 5 605 28 HOH HOH . 
T 8 HOH E 6 606 49 HOH HOH . 
T 8 HOH E 7 607 66 HOH HOH . 
T 8 HOH E 8 608 18 HOH HOH . 
T 8 HOH E 9 609 83 HOH HOH . 
T 8 HOH E 10 610 41 HOH HOH . 
T 8 HOH E 11 611 7 HOH HOH . 
T 8 HOH E 12 612 30 HOH HOH . 
T 8 HOH E 13 613 38 HOH HOH . 
T 8 HOH E 14 614 55 HOH HOH . 
T 8 HOH E 15 615 33 HOH HOH . 
T 8 HOH E 16 616 42 HOH HOH . 
T 8 HOH E 17 617 23 HOH HOH . 
T 8 HOH E 18 618 53 HOH HOH . 
T 8 HOH E 19 619 54 HOH HOH . 
T 8 HOH E 20 620 31 HOH HOH . 
T 8 HOH E 21 621 80 HOH HOH . 
T 8 HOH E 22 622 82 HOH HOH . 
T 8 HOH E 23 623 63 HOH HOH . 
T 8 HOH E 24 624 87 HOH HOH . 
T 8 HOH E 25 625 70 HOH HOH . 
T 8 HOH E 26 626 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . O 7 -27.147 34.787 59.347 1 78.05 ? C1 GOL 503 E 1 
HETATM 2 O O1 GOL . . . O 7 -26.251 33.712 59.193 1 76.06 ? O1 GOL 503 E 1 
HETATM 3 C C2 GOL . . . O 7 -28.352 34.538 58.455 1 77.51 ? C2 GOL 503 E 1 
HETATM 4 O O2 GOL . . . O 7 -28.963 33.335 58.854 1 72.18 ? O2 GOL 503 E 1 
HETATM 5 C C3 GOL . . . O 7 -29.331 35.693 58.612 1 83.64 ? C3 GOL 503 E 1 
HETATM 6 O O3 GOL . . . O 7 -30.163 35.779 57.474 1 91.9 ? O3 GOL 503 E 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#