data_6V1B # _model_server_result.job_id pUjEM90WU1gazoeC8dNQCw _model_server_result.datetime_utc '2024-11-27 00:05:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6V1B # _exptl.entry_id 6V1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.99 _cell.angle_gamma 90 _cell.entry_id 6V1B _cell.length_a 56.99 _cell.length_b 38.5 _cell.length_c 60.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 A,C,D,F 3 1 B,E,G 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 -x,y+1/2,-z+3 -1 0 0 0 1 0 0 0 -1 -59.470675 19.25 172.813357 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6V1B _atom_sites.fract_transf_matrix[1][1] 0.017547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 3 EDO EDO . D 3 H1B A 1 302 1 H1B LIG . E 3 H1B B 1 301 2 H1B LIG . F 4 HOH A 1 401 332 HOH HOH . F 4 HOH A 2 402 133 HOH HOH . F 4 HOH A 3 403 345 HOH HOH . F 4 HOH A 4 404 319 HOH HOH . F 4 HOH A 5 405 21 HOH HOH . F 4 HOH A 6 406 153 HOH HOH . F 4 HOH A 7 407 4 HOH HOH . F 4 HOH A 8 408 71 HOH HOH . F 4 HOH A 9 409 191 HOH HOH . F 4 HOH A 10 410 108 HOH HOH . F 4 HOH A 11 411 123 HOH HOH . F 4 HOH A 12 412 10 HOH HOH . F 4 HOH A 13 413 43 HOH HOH . F 4 HOH A 14 414 344 HOH HOH . F 4 HOH A 15 415 106 HOH HOH . F 4 HOH A 16 416 1 HOH HOH . F 4 HOH A 17 417 196 HOH HOH . F 4 HOH A 18 418 155 HOH HOH . F 4 HOH A 19 419 248 HOH HOH . F 4 HOH A 20 420 65 HOH HOH . F 4 HOH A 21 421 69 HOH HOH . F 4 HOH A 22 422 52 HOH HOH . F 4 HOH A 23 423 39 HOH HOH . F 4 HOH A 24 424 335 HOH HOH . F 4 HOH A 25 425 181 HOH HOH . F 4 HOH A 26 426 111 HOH HOH . F 4 HOH A 27 427 343 HOH HOH . F 4 HOH A 28 428 5 HOH HOH . F 4 HOH A 29 429 18 HOH HOH . F 4 HOH A 30 430 218 HOH HOH . F 4 HOH A 31 431 213 HOH HOH . F 4 HOH A 32 432 37 HOH HOH . F 4 HOH A 33 433 157 HOH HOH . F 4 HOH A 34 434 25 HOH HOH . F 4 HOH A 35 435 149 HOH HOH . F 4 HOH A 36 436 12 HOH HOH . F 4 HOH A 37 437 80 HOH HOH . F 4 HOH A 38 438 334 HOH HOH . F 4 HOH A 39 439 206 HOH HOH . F 4 HOH A 40 440 8 HOH HOH . F 4 HOH A 41 441 54 HOH HOH . F 4 HOH A 42 442 246 HOH HOH . F 4 HOH A 43 443 70 HOH HOH . F 4 HOH A 44 444 200 HOH HOH . F 4 HOH A 45 445 168 HOH HOH . F 4 HOH A 46 446 307 HOH HOH . F 4 HOH A 47 447 35 HOH HOH . F 4 HOH A 48 448 11 HOH HOH . F 4 HOH A 49 449 19 HOH HOH . F 4 HOH A 50 450 63 HOH HOH . F 4 HOH A 51 451 147 HOH HOH . F 4 HOH A 52 452 105 HOH HOH . F 4 HOH A 53 453 73 HOH HOH . F 4 HOH A 54 454 201 HOH HOH . F 4 HOH A 55 455 104 HOH HOH . F 4 HOH A 56 456 283 HOH HOH . F 4 HOH A 57 457 2 HOH HOH . F 4 HOH A 58 458 138 HOH HOH . F 4 HOH A 59 459 9 HOH HOH . F 4 HOH A 60 460 102 HOH HOH . F 4 HOH A 61 461 224 HOH HOH . F 4 HOH A 62 462 165 HOH HOH . F 4 HOH A 63 463 16 HOH HOH . F 4 HOH A 64 464 141 HOH HOH . F 4 HOH A 65 465 78 HOH HOH . F 4 HOH A 66 466 173 HOH HOH . F 4 HOH A 67 467 109 HOH HOH . F 4 HOH A 68 468 74 HOH HOH . F 4 HOH A 69 469 338 HOH HOH . F 4 HOH A 70 470 117 HOH HOH . F 4 HOH A 71 471 17 HOH HOH . F 4 HOH A 72 472 226 HOH HOH . F 4 HOH A 73 473 156 HOH HOH . F 4 HOH A 74 474 48 HOH HOH . F 4 HOH A 75 475 77 HOH HOH . F 4 HOH A 76 476 273 HOH HOH . F 4 HOH A 77 477 40 HOH HOH . F 4 HOH A 78 478 107 HOH HOH . F 4 HOH A 79 479 130 HOH HOH . F 4 HOH A 80 480 88 HOH HOH . F 4 HOH A 81 481 67 HOH HOH . F 4 HOH A 82 482 101 HOH HOH . F 4 HOH A 83 483 96 HOH HOH . F 4 HOH A 84 484 51 HOH HOH . F 4 HOH A 85 485 209 HOH HOH . F 4 HOH A 86 486 306 HOH HOH . F 4 HOH A 87 487 188 HOH HOH . F 4 HOH A 88 488 86 HOH HOH . F 4 HOH A 89 489 316 HOH HOH . F 4 HOH A 90 490 232 HOH HOH . F 4 HOH A 91 491 342 HOH HOH . F 4 HOH A 92 492 136 HOH HOH . F 4 HOH A 93 493 41 HOH HOH . F 4 HOH A 94 494 131 HOH HOH . F 4 HOH A 95 495 92 HOH HOH . F 4 HOH A 96 496 253 HOH HOH . F 4 HOH A 97 497 198 HOH HOH . F 4 HOH A 98 498 308 HOH HOH . F 4 HOH A 99 499 329 HOH HOH . F 4 HOH A 100 500 274 HOH HOH . F 4 HOH A 101 501 150 HOH HOH . F 4 HOH A 102 502 330 HOH HOH . F 4 HOH A 103 503 231 HOH HOH . F 4 HOH A 104 504 315 HOH HOH . F 4 HOH A 105 505 288 HOH HOH . F 4 HOH A 106 506 241 HOH HOH . F 4 HOH A 107 507 251 HOH HOH . F 4 HOH A 108 508 245 HOH HOH . F 4 HOH A 109 509 160 HOH HOH . F 4 HOH A 110 510 247 HOH HOH . F 4 HOH A 111 511 346 HOH HOH . F 4 HOH A 112 512 128 HOH HOH . F 4 HOH A 113 513 146 HOH HOH . F 4 HOH A 114 514 180 HOH HOH . F 4 HOH A 115 515 302 HOH HOH . F 4 HOH A 116 516 125 HOH HOH . F 4 HOH A 117 517 76 HOH HOH . F 4 HOH A 118 518 47 HOH HOH . F 4 HOH A 119 519 45 HOH HOH . F 4 HOH A 120 520 300 HOH HOH . F 4 HOH A 121 521 79 HOH HOH . F 4 HOH A 122 522 225 HOH HOH . F 4 HOH A 123 523 309 HOH HOH . F 4 HOH A 124 524 238 HOH HOH . F 4 HOH A 125 525 333 HOH HOH . F 4 HOH A 126 526 317 HOH HOH . F 4 HOH A 127 527 267 HOH HOH . F 4 HOH A 128 528 162 HOH HOH . F 4 HOH A 129 529 235 HOH HOH . F 4 HOH A 130 530 228 HOH HOH . F 4 HOH A 131 531 304 HOH HOH . F 4 HOH A 132 532 249 HOH HOH . F 4 HOH A 133 533 120 HOH HOH . F 4 HOH A 134 534 210 HOH HOH . F 4 HOH A 135 535 323 HOH HOH . F 4 HOH A 136 536 298 HOH HOH . F 4 HOH A 137 537 341 HOH HOH . F 4 HOH A 138 538 268 HOH HOH . F 4 HOH A 139 539 260 HOH HOH . F 4 HOH A 140 540 195 HOH HOH . F 4 HOH A 141 541 90 HOH HOH . F 4 HOH A 142 542 250 HOH HOH . F 4 HOH A 143 543 292 HOH HOH . F 4 HOH A 144 544 294 HOH HOH . F 4 HOH A 145 545 219 HOH HOH . F 4 HOH A 146 546 187 HOH HOH . F 4 HOH A 147 547 310 HOH HOH . F 4 HOH A 148 548 236 HOH HOH . F 4 HOH A 149 549 243 HOH HOH . F 4 HOH A 150 550 62 HOH HOH . F 4 HOH A 151 551 144 HOH HOH . F 4 HOH A 152 552 91 HOH HOH . F 4 HOH A 153 553 233 HOH HOH . F 4 HOH A 154 554 230 HOH HOH . G 4 HOH B 1 401 328 HOH HOH . G 4 HOH B 2 402 244 HOH HOH . G 4 HOH B 3 403 336 HOH HOH . G 4 HOH B 4 404 95 HOH HOH . G 4 HOH B 5 405 53 HOH HOH . G 4 HOH B 6 406 208 HOH HOH . G 4 HOH B 7 407 305 HOH HOH . G 4 HOH B 8 408 20 HOH HOH . G 4 HOH B 9 409 59 HOH HOH . G 4 HOH B 10 410 98 HOH HOH . G 4 HOH B 11 411 175 HOH HOH . G 4 HOH B 12 412 211 HOH HOH . G 4 HOH B 13 413 87 HOH HOH . G 4 HOH B 14 414 84 HOH HOH . G 4 HOH B 15 415 154 HOH HOH . G 4 HOH B 16 416 94 HOH HOH . G 4 HOH B 17 417 14 HOH HOH . G 4 HOH B 18 418 347 HOH HOH . G 4 HOH B 19 419 27 HOH HOH . G 4 HOH B 20 420 33 HOH HOH . G 4 HOH B 21 421 257 HOH HOH . G 4 HOH B 22 422 103 HOH HOH . G 4 HOH B 23 423 7 HOH HOH . G 4 HOH B 24 424 44 HOH HOH . G 4 HOH B 25 425 152 HOH HOH . G 4 HOH B 26 426 252 HOH HOH . G 4 HOH B 27 427 151 HOH HOH . G 4 HOH B 28 428 82 HOH HOH . G 4 HOH B 29 429 115 HOH HOH . G 4 HOH B 30 430 185 HOH HOH . G 4 HOH B 31 431 36 HOH HOH . G 4 HOH B 32 432 93 HOH HOH . G 4 HOH B 33 433 32 HOH HOH . G 4 HOH B 34 434 13 HOH HOH . G 4 HOH B 35 435 28 HOH HOH . G 4 HOH B 36 436 3 HOH HOH . G 4 HOH B 37 437 75 HOH HOH . G 4 HOH B 38 438 148 HOH HOH . G 4 HOH B 39 439 119 HOH HOH . G 4 HOH B 40 440 58 HOH HOH . G 4 HOH B 41 441 158 HOH HOH . G 4 HOH B 42 442 50 HOH HOH . G 4 HOH B 43 443 81 HOH HOH . G 4 HOH B 44 444 240 HOH HOH . G 4 HOH B 45 445 135 HOH HOH . G 4 HOH B 46 446 254 HOH HOH . G 4 HOH B 47 447 38 HOH HOH . G 4 HOH B 48 448 34 HOH HOH . G 4 HOH B 49 449 22 HOH HOH . G 4 HOH B 50 450 227 HOH HOH . G 4 HOH B 51 451 140 HOH HOH . G 4 HOH B 52 452 193 HOH HOH . G 4 HOH B 53 453 29 HOH HOH . G 4 HOH B 54 454 23 HOH HOH . G 4 HOH B 55 455 114 HOH HOH . G 4 HOH B 56 456 229 HOH HOH . G 4 HOH B 57 457 60 HOH HOH . G 4 HOH B 58 458 121 HOH HOH . G 4 HOH B 59 459 66 HOH HOH . G 4 HOH B 60 460 46 HOH HOH . G 4 HOH B 61 461 221 HOH HOH . G 4 HOH B 62 462 161 HOH HOH . G 4 HOH B 63 463 203 HOH HOH . G 4 HOH B 64 464 31 HOH HOH . G 4 HOH B 65 465 24 HOH HOH . G 4 HOH B 66 466 134 HOH HOH . G 4 HOH B 67 467 116 HOH HOH . G 4 HOH B 68 468 61 HOH HOH . G 4 HOH B 69 469 68 HOH HOH . G 4 HOH B 70 470 142 HOH HOH . G 4 HOH B 71 471 97 HOH HOH . G 4 HOH B 72 472 183 HOH HOH . G 4 HOH B 73 473 176 HOH HOH . G 4 HOH B 74 474 220 HOH HOH . G 4 HOH B 75 475 42 HOH HOH . G 4 HOH B 76 476 122 HOH HOH . G 4 HOH B 77 477 290 HOH HOH . G 4 HOH B 78 478 280 HOH HOH . G 4 HOH B 79 479 113 HOH HOH . G 4 HOH B 80 480 179 HOH HOH . G 4 HOH B 81 481 49 HOH HOH . G 4 HOH B 82 482 214 HOH HOH . G 4 HOH B 83 483 291 HOH HOH . G 4 HOH B 84 484 172 HOH HOH . G 4 HOH B 85 485 279 HOH HOH . G 4 HOH B 86 486 30 HOH HOH . G 4 HOH B 87 487 169 HOH HOH . G 4 HOH B 88 488 258 HOH HOH . G 4 HOH B 89 489 55 HOH HOH . G 4 HOH B 90 490 205 HOH HOH . G 4 HOH B 91 491 264 HOH HOH . G 4 HOH B 92 492 132 HOH HOH . G 4 HOH B 93 493 6 HOH HOH . G 4 HOH B 94 494 326 HOH HOH . G 4 HOH B 95 495 266 HOH HOH . G 4 HOH B 96 496 269 HOH HOH . G 4 HOH B 97 497 124 HOH HOH . G 4 HOH B 98 498 234 HOH HOH . G 4 HOH B 99 499 137 HOH HOH . G 4 HOH B 100 500 85 HOH HOH . G 4 HOH B 101 501 337 HOH HOH . G 4 HOH B 102 502 126 HOH HOH . G 4 HOH B 103 503 212 HOH HOH . G 4 HOH B 104 504 189 HOH HOH . G 4 HOH B 105 505 15 HOH HOH . G 4 HOH B 106 506 143 HOH HOH . G 4 HOH B 107 507 167 HOH HOH . G 4 HOH B 108 508 127 HOH HOH . G 4 HOH B 109 509 237 HOH HOH . G 4 HOH B 110 510 56 HOH HOH . G 4 HOH B 111 511 261 HOH HOH . G 4 HOH B 112 512 295 HOH HOH . G 4 HOH B 113 513 256 HOH HOH . G 4 HOH B 114 514 174 HOH HOH . G 4 HOH B 115 515 184 HOH HOH . G 4 HOH B 116 516 99 HOH HOH . G 4 HOH B 117 517 110 HOH HOH . G 4 HOH B 118 518 340 HOH HOH . G 4 HOH B 119 519 118 HOH HOH . G 4 HOH B 120 520 265 HOH HOH . G 4 HOH B 121 521 339 HOH HOH . G 4 HOH B 122 522 271 HOH HOH . G 4 HOH B 123 523 282 HOH HOH . G 4 HOH B 124 524 177 HOH HOH . G 4 HOH B 125 525 272 HOH HOH . G 4 HOH B 126 526 194 HOH HOH . G 4 HOH B 127 527 276 HOH HOH . G 4 HOH B 128 528 216 HOH HOH . G 4 HOH B 129 529 83 HOH HOH . G 4 HOH B 130 530 64 HOH HOH . G 4 HOH B 131 531 259 HOH HOH . G 4 HOH B 132 532 192 HOH HOH . G 4 HOH B 133 533 204 HOH HOH . G 4 HOH B 134 534 318 HOH HOH . G 4 HOH B 135 535 72 HOH HOH . G 4 HOH B 136 536 170 HOH HOH . G 4 HOH B 137 537 263 HOH HOH . G 4 HOH B 138 538 207 HOH HOH . G 4 HOH B 139 539 277 HOH HOH . G 4 HOH B 140 540 159 HOH HOH . G 4 HOH B 141 541 202 HOH HOH . G 4 HOH B 142 542 26 HOH HOH . G 4 HOH B 143 543 321 HOH HOH . G 4 HOH B 144 544 112 HOH HOH . G 4 HOH B 145 545 57 HOH HOH . G 4 HOH B 146 546 186 HOH HOH . G 4 HOH B 147 547 255 HOH HOH . G 4 HOH B 148 548 182 HOH HOH . G 4 HOH B 149 549 100 HOH HOH . G 4 HOH B 150 550 163 HOH HOH . G 4 HOH B 151 551 178 HOH HOH . G 4 HOH B 152 552 217 HOH HOH . G 4 HOH B 153 553 293 HOH HOH . G 4 HOH B 154 554 223 HOH HOH . G 4 HOH B 155 555 190 HOH HOH . G 4 HOH B 156 556 197 HOH HOH . G 4 HOH B 157 557 171 HOH HOH . G 4 HOH B 158 558 129 HOH HOH . G 4 HOH B 159 559 262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -7.567 -44.082 59.147 1 90.48 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . C 2 -7.623 -44.642 57.831 1 73.5 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . C 2 -8.495 -44.859 60.075 1 96.65 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . C 2 -7.821 -45.119 61.313 1 77.77 ? O2 EDO 301 A 1 HETATM 5 H H11 EDO . . . C 2 -6.544 -44.126 59.525 1 108.57 ? H11 EDO 301 A 1 HETATM 6 H H12 EDO . . . C 2 -7.868 -43.033 59.116 1 108.57 ? H12 EDO 301 A 1 HETATM 7 H HO1 EDO . . . C 2 -7.066 -44.121 57.236 1 88.2 ? HO1 EDO 301 A 1 HETATM 8 H H21 EDO . . . C 2 -8.786 -45.801 59.606 1 115.98 ? H21 EDO 301 A 1 HETATM 9 H H22 EDO . . . C 2 -9.403 -44.282 60.261 1 115.98 ? H22 EDO 301 A 1 HETATM 10 H HO2 EDO . . . C 2 -8.394 -45.647 61.887 1 93.33 ? HO2 EDO 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #