data_6V1E # _model_server_result.job_id BcTtDs3Q_TqkhFZjMm71Bg _model_server_result.datetime_utc '2024-12-26 17:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6V1E # _exptl.entry_id 6V1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-[(dimethylamino)methyl]-3,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V1E _cell.length_a 71.73 _cell.length_b 108.49 _cell.length_c 36.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N3 O3' _chem_comp.formula_weight 353.415 _chem_comp.id 5SW _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-[(dimethylamino)methyl]-3,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O22 5SW sing 1 n n O22 C13 5SW sing 2 n n C13 C17 5SW doub 3 n y C13 C21 5SW sing 4 n y C14 C21 5SW sing 5 n n C14 N15 5SW sing 6 n n C25 N15 5SW sing 7 n n C17 C18 5SW sing 8 n y C21 C20 5SW doub 9 n y N15 C16 5SW sing 10 n n C18 C10 5SW sing 11 n n C18 C19 5SW doub 12 n y C20 C19 5SW sing 13 n y C20 O23 5SW sing 14 n n C1 C2 5SW doub 15 n y C1 C5 5SW sing 16 n y C10 C5 5SW sing 17 n n C10 C9 5SW doub 18 n n C2 N3 5SW sing 19 n y C5 C6 5SW doub 20 n y C9 N8 5SW sing 21 n n O23 C24 5SW sing 22 n n N3 C4 5SW doub 23 n y C6 C4 5SW sing 24 n y C6 C7 5SW sing 25 n n N8 C7 5SW sing 26 n n N8 C12 5SW sing 27 n n C7 O11 5SW doub 28 n n C4 H1 5SW sing 29 n n C17 H2 5SW sing 30 n n C24 H3 5SW sing 31 n n C24 H4 5SW sing 32 n n C24 H5 5SW sing 33 n n C26 H6 5SW sing 34 n n C26 H7 5SW sing 35 n n C26 H8 5SW sing 36 n n C1 H9 5SW sing 37 n n C2 H10 5SW sing 38 n n C16 H11 5SW sing 39 n n C16 H12 5SW sing 40 n n C16 H13 5SW sing 41 n n C25 H14 5SW sing 42 n n C25 H15 5SW sing 43 n n C25 H16 5SW sing 44 n n C9 H17 5SW sing 45 n n C12 H18 5SW sing 46 n n C12 H19 5SW sing 47 n n C12 H20 5SW sing 48 n n C19 H21 5SW sing 49 n n C14 H22 5SW sing 50 n n C14 H23 5SW sing 51 n n # _atom_sites.entry_id 6V1E _atom_sites.fract_transf_matrix[1][1] 0.013941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5SW A 1 301 1 5SW 5SW . C 3 EDO A 1 302 1 EDO EDO . D 4 HOH A 1 401 7 HOH HOH . D 4 HOH A 2 402 26 HOH HOH . D 4 HOH A 3 403 25 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 30 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 21 HOH HOH . D 4 HOH A 8 408 2 HOH HOH . D 4 HOH A 9 409 8 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 24 HOH HOH . D 4 HOH A 12 412 1 HOH HOH . D 4 HOH A 13 413 3 HOH HOH . D 4 HOH A 14 414 15 HOH HOH . D 4 HOH A 15 415 33 HOH HOH . D 4 HOH A 16 416 5 HOH HOH . D 4 HOH A 17 417 9 HOH HOH . D 4 HOH A 18 418 29 HOH HOH . D 4 HOH A 19 419 18 HOH HOH . D 4 HOH A 20 420 31 HOH HOH . D 4 HOH A 21 421 32 HOH HOH . D 4 HOH A 22 422 23 HOH HOH . D 4 HOH A 23 423 12 HOH HOH . D 4 HOH A 24 424 16 HOH HOH . D 4 HOH A 25 425 13 HOH HOH . D 4 HOH A 26 426 20 HOH HOH . D 4 HOH A 27 427 19 HOH HOH . D 4 HOH A 28 428 22 HOH HOH . D 4 HOH A 29 429 36 HOH HOH . D 4 HOH A 30 430 37 HOH HOH . D 4 HOH A 31 431 17 HOH HOH . D 4 HOH A 32 432 34 HOH HOH . D 4 HOH A 33 433 11 HOH HOH . D 4 HOH A 34 434 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5SW . . . B 2 31.247 46.021 16.416 1 31.17 ? N3 5SW 301 A 1 HETATM 2 C C4 5SW . . . B 2 30.378 44.998 16.403 1 32.91 ? C4 5SW 301 A 1 HETATM 3 C C5 5SW . . . B 2 28.856 46.022 18.06 1 35.47 ? C5 5SW 301 A 1 HETATM 4 C C6 5SW . . . B 2 29.185 44.936 17.185 1 34.87 ? C6 5SW 301 A 1 HETATM 5 C C7 5SW . . . B 2 28.294 43.771 17.101 1 33.15 ? C7 5SW 301 A 1 HETATM 6 C C10 5SW . . . B 2 27.631 45.991 18.88 1 36.27 ? C10 5SW 301 A 1 HETATM 7 C C13 5SW . . . B 2 25.676 49.003 20.523 1 33.34 ? C13 5SW 301 A 1 HETATM 8 C C17 5SW . . . B 2 26.088 47.963 19.647 1 33.56 ? C17 5SW 301 A 1 HETATM 9 C C20 5SW . . . B 2 27.497 48.487 21.941 1 34.44 ? C20 5SW 301 A 1 HETATM 10 C C21 5SW . . . B 2 26.357 49.324 21.729 1 33.89 ? C21 5SW 301 A 1 HETATM 11 C C24 5SW . . . B 2 29.269 47.809 23.449 1 34.99 ? C24 5SW 301 A 1 HETATM 12 C C26 5SW . . . B 2 23.792 49.483 19.081 1 34.96 ? C26 5SW 301 A 1 HETATM 13 C C18 5SW . . . B 2 27.206 47.125 19.855 1 34.25 ? C18 5SW 301 A 1 HETATM 14 C C1 5SW . . . B 2 29.795 47.078 18.046 1 34.1 ? C1 5SW 301 A 1 HETATM 15 N N8 5SW . . . B 2 27.113 43.75 17.9 1 33.57 ? N8 5SW 301 A 1 HETATM 16 C C2 5SW . . . B 2 30.934 47.055 17.25 1 31.12 ? C2 5SW 301 A 1 HETATM 17 C C16 5SW . . . B 2 23.637 49.754 23.362 1 32.52 ? C16 5SW 301 A 1 HETATM 18 C C25 5SW . . . B 2 25.493 48.835 24.605 1 29.7 ? C25 5SW 301 A 1 HETATM 19 C C9 5SW . . . B 2 26.851 44.858 18.743 1 33.89 ? C9 5SW 301 A 1 HETATM 20 C C12 5SW . . . B 2 26.18 42.556 17.824 1 32.12 ? C12 5SW 301 A 1 HETATM 21 C C19 5SW . . . B 2 27.884 47.45 21.052 1 32.94 ? C19 5SW 301 A 1 HETATM 22 C C14 5SW . . . B 2 25.924 50.463 22.688 1 32.7 ? C14 5SW 301 A 1 HETATM 23 O O23 5SW . . . B 2 28.24 48.717 23.092 1 33.63 ? O23 5SW 301 A 1 HETATM 24 O O22 5SW . . . B 2 24.568 49.773 20.234 1 34.64 ? O22 5SW 301 A 1 HETATM 25 N N15 5SW . . . B 2 25.021 50.049 23.845 1 31.15 ? N15 5SW 301 A 1 HETATM 26 O O11 5SW . . . B 2 28.52 42.801 16.364 1 29.66 ? O11 5SW 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 68 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 592 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #