data_6V1F # _model_server_result.job_id w5Ssn8ZZvKfuRZp0qyP1nw _model_server_result.datetime_utc '2025-01-25 21:16:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6V1F # _exptl.entry_id 6V1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V1F _cell.length_a 71.49 _cell.length_b 108.71 _cell.length_c 36.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N3 O3' _chem_comp.formula_weight 353.415 _chem_comp.id 5U6 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O25 5U6 sing 1 n n O25 C17 5U6 sing 2 n n C13 C17 5U6 doub 3 n y C13 C21 5U6 sing 4 n y C17 C18 5U6 sing 5 n y C14 C21 5U6 sing 6 n n C14 N15 5U6 sing 7 n n C21 C20 5U6 doub 8 n y C16 N15 5U6 sing 9 n n C18 C10 5U6 sing 10 n n C18 C19 5U6 doub 11 n y N15 C24 5U6 sing 12 n n C1 C5 5U6 doub 13 n y C1 C2 5U6 sing 14 n y C10 C5 5U6 sing 15 n n C10 C9 5U6 doub 16 n n C20 C19 5U6 sing 17 n y C20 O22 5U6 sing 18 n n C5 C6 5U6 sing 19 n y C2 N3 5U6 doub 20 n y C9 N8 5U6 sing 21 n n C6 C4 5U6 doub 22 n y C6 C7 5U6 sing 23 n n N3 C4 5U6 sing 24 n y N8 C7 5U6 sing 25 n n N8 C12 5U6 sing 26 n n C7 O11 5U6 doub 27 n n O22 C23 5U6 sing 28 n n C4 H1 5U6 sing 29 n n C13 H2 5U6 sing 30 n n C24 H3 5U6 sing 31 n n C24 H4 5U6 sing 32 n n C24 H5 5U6 sing 33 n n C26 H6 5U6 sing 34 n n C26 H7 5U6 sing 35 n n C26 H8 5U6 sing 36 n n C1 H9 5U6 sing 37 n n C2 H10 5U6 sing 38 n n C16 H11 5U6 sing 39 n n C16 H12 5U6 sing 40 n n C16 H13 5U6 sing 41 n n C9 H14 5U6 sing 42 n n C12 H15 5U6 sing 43 n n C12 H16 5U6 sing 44 n n C12 H17 5U6 sing 45 n n C19 H18 5U6 sing 46 n n C14 H19 5U6 sing 47 n n C14 H20 5U6 sing 48 n n C23 H22 5U6 sing 49 n n C23 H23 5U6 sing 50 n n C23 H24 5U6 sing 51 n n # _atom_sites.entry_id 6V1F _atom_sites.fract_transf_matrix[1][1] 0.013988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5U6 A 1 301 1 5U6 5U6 . C 3 HOH A 1 401 4 HOH HOH . C 3 HOH A 2 402 1 HOH HOH . C 3 HOH A 3 403 15 HOH HOH . C 3 HOH A 4 404 18 HOH HOH . C 3 HOH A 5 405 16 HOH HOH . C 3 HOH A 6 406 14 HOH HOH . C 3 HOH A 7 407 24 HOH HOH . C 3 HOH A 8 408 6 HOH HOH . C 3 HOH A 9 409 20 HOH HOH . C 3 HOH A 10 410 2 HOH HOH . C 3 HOH A 11 411 7 HOH HOH . C 3 HOH A 12 412 11 HOH HOH . C 3 HOH A 13 413 29 HOH HOH . C 3 HOH A 14 414 12 HOH HOH . C 3 HOH A 15 415 9 HOH HOH . C 3 HOH A 16 416 19 HOH HOH . C 3 HOH A 17 417 23 HOH HOH . C 3 HOH A 18 418 3 HOH HOH . C 3 HOH A 19 419 17 HOH HOH . C 3 HOH A 20 420 5 HOH HOH . C 3 HOH A 21 421 22 HOH HOH . C 3 HOH A 22 422 8 HOH HOH . C 3 HOH A 23 423 27 HOH HOH . C 3 HOH A 24 424 26 HOH HOH . C 3 HOH A 25 425 21 HOH HOH . C 3 HOH A 26 426 10 HOH HOH . C 3 HOH A 27 427 25 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5U6 . . . B 2 4.677 8.03 34.968 1 40.27 ? N3 5U6 301 A 1 HETATM 2 C C4 5U6 . . . B 2 5.48 9.084 34.912 1 40.93 ? C4 5U6 301 A 1 HETATM 3 C C5 5U6 . . . B 2 6.874 8.164 36.662 1 39.59 ? C5 5U6 301 A 1 HETATM 4 C C6 5U6 . . . B 2 6.607 9.184 35.76 1 38.68 ? C6 5U6 301 A 1 HETATM 5 C C7 5U6 . . . B 2 7.543 10.435 35.68 1 35.64 ? C7 5U6 301 A 1 HETATM 6 C C10 5U6 . . . B 2 8.092 8.267 37.587 1 40.42 ? C10 5U6 301 A 1 HETATM 7 C C13 5U6 . . . B 2 9.951 5.437 39.286 1 48.12 ? C13 5U6 301 A 1 HETATM 8 C C17 5U6 . . . B 2 9.594 6.43 38.388 1 45.34 ? C17 5U6 301 A 1 HETATM 9 C C20 5U6 . . . B 2 8.009 5.93 40.609 1 48.41 ? C20 5U6 301 A 1 HETATM 10 C C21 5U6 . . . B 2 9.161 5.188 40.397 1 50.29 ? C21 5U6 301 A 1 HETATM 11 C C24 5U6 . . . B 2 11.853 4.352 41.963 1 55.97 ? C24 5U6 301 A 1 HETATM 12 C C26 5U6 . . . B 2 11.307 5.68 36.939 1 40.56 ? C26 5U6 301 A 1 HETATM 13 C C18 5U6 . . . B 2 8.444 7.174 38.596 1 44.22 ? C18 5U6 301 A 1 HETATM 14 C C1 5U6 . . . B 2 5.991 7.056 36.689 1 42.17 ? C1 5U6 301 A 1 HETATM 15 N N8 5U6 . . . B 2 8.708 10.532 36.562 1 34.15 ? N8 5U6 301 A 1 HETATM 16 C C2 5U6 . . . B 2 4.9 7.03 35.821 1 41.79 ? C2 5U6 301 A 1 HETATM 17 C C16 5U6 . . . B 2 10.253 3.897 43.647 1 57.58 ? C16 5U6 301 A 1 HETATM 18 O O25 5U6 . . . B 2 10.393 6.691 37.264 1 41.3 ? O25 5U6 301 A 1 HETATM 19 C C9 5U6 . . . B 2 8.988 9.474 37.501 1 34.35 ? C9 5U6 301 A 1 HETATM 20 C C12 5U6 . . . B 2 9.581 11.688 36.492 1 30.46 ? C12 5U6 301 A 1 HETATM 21 C C19 5U6 . . . B 2 7.652 6.93 39.711 1 46.56 ? C19 5U6 301 A 1 HETATM 22 C C14 5U6 . . . B 2 9.552 4.088 41.388 1 53.37 ? C14 5U6 301 A 1 HETATM 23 O O22 5U6 . . . B 2 7.226 5.66 41.74 1 45.96 ? O22 5U6 301 A 1 HETATM 24 N N15 5U6 . . . B 2 10.484 4.585 42.39 1 56.37 ? N15 5U6 301 A 1 HETATM 25 O O11 5U6 . . . B 2 7.312 11.304 34.909 1 35.7 ? O11 5U6 301 A 1 HETATM 26 C C23 5U6 . . . B 2 6.102 6.479 41.897 1 46.06 ? C23 5U6 301 A 1 # _model_server_stats.io_time_ms 211 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #