data_6V1K # _model_server_result.job_id hEg5csAsNHM1dpLw7KA4Zg _model_server_result.datetime_utc '2024-10-19 03:41:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6V1K # _exptl.entry_id 6V1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-[(dimethylamino)methyl]-3,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V1K _cell.length_a 37.51 _cell.length_b 46.59 _cell.length_c 78.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N3 O3' _chem_comp.formula_weight 353.415 _chem_comp.id 5SW _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-[(dimethylamino)methyl]-3,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O22 5SW sing 1 n n O22 C13 5SW sing 2 n n C13 C17 5SW doub 3 n y C13 C21 5SW sing 4 n y C14 C21 5SW sing 5 n n C14 N15 5SW sing 6 n n C25 N15 5SW sing 7 n n C17 C18 5SW sing 8 n y C21 C20 5SW doub 9 n y N15 C16 5SW sing 10 n n C18 C10 5SW sing 11 n n C18 C19 5SW doub 12 n y C20 C19 5SW sing 13 n y C20 O23 5SW sing 14 n n C1 C2 5SW doub 15 n y C1 C5 5SW sing 16 n y C10 C5 5SW sing 17 n n C10 C9 5SW doub 18 n n C2 N3 5SW sing 19 n y C5 C6 5SW doub 20 n y C9 N8 5SW sing 21 n n O23 C24 5SW sing 22 n n N3 C4 5SW doub 23 n y C6 C4 5SW sing 24 n y C6 C7 5SW sing 25 n n N8 C7 5SW sing 26 n n N8 C12 5SW sing 27 n n C7 O11 5SW doub 28 n n C4 H1 5SW sing 29 n n C17 H2 5SW sing 30 n n C24 H3 5SW sing 31 n n C24 H4 5SW sing 32 n n C24 H5 5SW sing 33 n n C26 H6 5SW sing 34 n n C26 H7 5SW sing 35 n n C26 H8 5SW sing 36 n n C1 H9 5SW sing 37 n n C2 H10 5SW sing 38 n n C16 H11 5SW sing 39 n n C16 H12 5SW sing 40 n n C16 H13 5SW sing 41 n n C25 H14 5SW sing 42 n n C25 H15 5SW sing 43 n n C25 H16 5SW sing 44 n n C9 H17 5SW sing 45 n n C12 H18 5SW sing 46 n n C12 H19 5SW sing 47 n n C12 H20 5SW sing 48 n n C19 H21 5SW sing 49 n n C14 H22 5SW sing 50 n n C14 H23 5SW sing 51 n n # _atom_sites.entry_id 6V1K _atom_sites.fract_transf_matrix[1][1] 0.02666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5SW A 1 201 1 5SW 5SW . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 3 EDO A 1 205 4 EDO EDO . G 3 EDO A 1 206 8 EDO EDO . H 4 HOH A 1 301 99 HOH HOH . H 4 HOH A 2 302 95 HOH HOH . H 4 HOH A 3 303 12 HOH HOH . H 4 HOH A 4 304 45 HOH HOH . H 4 HOH A 5 305 78 HOH HOH . H 4 HOH A 6 306 46 HOH HOH . H 4 HOH A 7 307 59 HOH HOH . H 4 HOH A 8 308 81 HOH HOH . H 4 HOH A 9 309 90 HOH HOH . H 4 HOH A 10 310 42 HOH HOH . H 4 HOH A 11 311 47 HOH HOH . H 4 HOH A 12 312 8 HOH HOH . H 4 HOH A 13 313 70 HOH HOH . H 4 HOH A 14 314 29 HOH HOH . H 4 HOH A 15 315 24 HOH HOH . H 4 HOH A 16 316 4 HOH HOH . H 4 HOH A 17 317 53 HOH HOH . H 4 HOH A 18 318 62 HOH HOH . H 4 HOH A 19 319 10 HOH HOH . H 4 HOH A 20 320 69 HOH HOH . H 4 HOH A 21 321 74 HOH HOH . H 4 HOH A 22 322 33 HOH HOH . H 4 HOH A 23 323 20 HOH HOH . H 4 HOH A 24 324 23 HOH HOH . H 4 HOH A 25 325 28 HOH HOH . H 4 HOH A 26 326 72 HOH HOH . H 4 HOH A 27 327 75 HOH HOH . H 4 HOH A 28 328 96 HOH HOH . H 4 HOH A 29 329 71 HOH HOH . H 4 HOH A 30 330 32 HOH HOH . H 4 HOH A 31 331 2 HOH HOH . H 4 HOH A 32 332 57 HOH HOH . H 4 HOH A 33 333 43 HOH HOH . H 4 HOH A 34 334 76 HOH HOH . H 4 HOH A 35 335 40 HOH HOH . H 4 HOH A 36 336 84 HOH HOH . H 4 HOH A 37 337 5 HOH HOH . H 4 HOH A 38 338 18 HOH HOH . H 4 HOH A 39 339 6 HOH HOH . H 4 HOH A 40 340 64 HOH HOH . H 4 HOH A 41 341 65 HOH HOH . H 4 HOH A 42 342 1 HOH HOH . H 4 HOH A 43 343 49 HOH HOH . H 4 HOH A 44 344 25 HOH HOH . H 4 HOH A 45 345 58 HOH HOH . H 4 HOH A 46 346 19 HOH HOH . H 4 HOH A 47 347 54 HOH HOH . H 4 HOH A 48 348 73 HOH HOH . H 4 HOH A 49 349 52 HOH HOH . H 4 HOH A 50 350 39 HOH HOH . H 4 HOH A 51 351 94 HOH HOH . H 4 HOH A 52 352 30 HOH HOH . H 4 HOH A 53 353 34 HOH HOH . H 4 HOH A 54 354 7 HOH HOH . H 4 HOH A 55 355 80 HOH HOH . H 4 HOH A 56 356 15 HOH HOH . H 4 HOH A 57 357 50 HOH HOH . H 4 HOH A 58 358 68 HOH HOH . H 4 HOH A 59 359 36 HOH HOH . H 4 HOH A 60 360 3 HOH HOH . H 4 HOH A 61 361 13 HOH HOH . H 4 HOH A 62 362 31 HOH HOH . H 4 HOH A 63 363 37 HOH HOH . H 4 HOH A 64 364 17 HOH HOH . H 4 HOH A 65 365 14 HOH HOH . H 4 HOH A 66 366 27 HOH HOH . H 4 HOH A 67 367 21 HOH HOH . H 4 HOH A 68 368 88 HOH HOH . H 4 HOH A 69 369 98 HOH HOH . H 4 HOH A 70 370 16 HOH HOH . H 4 HOH A 71 371 83 HOH HOH . H 4 HOH A 72 372 93 HOH HOH . H 4 HOH A 73 373 9 HOH HOH . H 4 HOH A 74 374 61 HOH HOH . H 4 HOH A 75 375 82 HOH HOH . H 4 HOH A 76 376 92 HOH HOH . H 4 HOH A 77 377 66 HOH HOH . H 4 HOH A 78 378 63 HOH HOH . H 4 HOH A 79 379 97 HOH HOH . H 4 HOH A 80 380 89 HOH HOH . H 4 HOH A 81 381 51 HOH HOH . H 4 HOH A 82 382 60 HOH HOH . H 4 HOH A 83 383 11 HOH HOH . H 4 HOH A 84 384 55 HOH HOH . H 4 HOH A 85 385 67 HOH HOH . H 4 HOH A 86 386 79 HOH HOH . H 4 HOH A 87 387 35 HOH HOH . H 4 HOH A 88 388 77 HOH HOH . H 4 HOH A 89 389 86 HOH HOH . H 4 HOH A 90 390 85 HOH HOH . H 4 HOH A 91 391 87 HOH HOH . H 4 HOH A 92 392 38 HOH HOH . H 4 HOH A 93 393 56 HOH HOH . H 4 HOH A 94 394 26 HOH HOH . H 4 HOH A 95 395 91 HOH HOH . H 4 HOH A 96 396 41 HOH HOH . H 4 HOH A 97 397 48 HOH HOH . H 4 HOH A 98 398 22 HOH HOH . H 4 HOH A 99 399 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5SW . . . B 2 50.122 37.327 -1.06 1 20.72 ? N3 5SW 201 A 1 HETATM 2 C C4 5SW . . . B 2 50.423 38.491 -0.442 1 18.21 ? C4 5SW 201 A 1 HETATM 3 C C5 5SW . . . B 2 48.155 38.557 0.506 1 13.29 ? C5 5SW 201 A 1 HETATM 4 C C6 5SW . . . B 2 49.457 39.153 0.355 1 14.51 ? C6 5SW 201 A 1 HETATM 5 C C7 5SW . . . B 2 49.773 40.381 1.007 1 10.21 ? C7 5SW 201 A 1 HETATM 6 C C10 5SW . . . B 2 47.187 39.218 1.325 1 10.65 ? C10 5SW 201 A 1 HETATM 7 C C13 5SW . . . B 2 43.9 38.782 3.14 1 10.7 ? C13 5SW 201 A 1 HETATM 8 C C17 5SW . . . B 2 45.243 39.113 2.848 1 8.1 ? C17 5SW 201 A 1 HETATM 9 C C20 5SW . . . B 2 43.673 37.834 0.91 1 11.66 ? C20 5SW 201 A 1 HETATM 10 C C21 5SW . . . B 2 43.11 38.127 2.171 1 9.58 ? C21 5SW 201 A 1 HETATM 11 C C24 5SW . . . B 2 43.568 36.808 -1.233 1 10.22 ? C24 5SW 201 A 1 HETATM 12 C C26 5SW . . . B 2 44.099 39.836 5.296 1 17.15 ? C26 5SW 201 A 1 HETATM 13 C C18 5SW . . . B 2 45.829 38.817 1.593 1 9.1 ? C18 5SW 201 A 1 HETATM 14 C C1 5SW . . . B 2 47.908 37.319 -0.162 1 14.35 ? C1 5SW 201 A 1 HETATM 15 N N8 5SW . . . B 2 48.828 41.004 1.769 1 11.94 ? N8 5SW 201 A 1 HETATM 16 C C2 5SW . . . B 2 48.909 36.729 -0.95 1 18.16 ? C2 5SW 201 A 1 HETATM 17 C C16 5SW . . . B 2 41.602 35.397 2.883 1 12.97 ? C16 5SW 201 A 1 HETATM 18 C C25 5SW . . . B 2 40.014 36.842 4.035 1 14.9 ? C25 5SW 201 A 1 HETATM 19 C C9 5SW . . . B 2 47.583 40.448 1.914 1 9.09 ? C9 5SW 201 A 1 HETATM 20 C C12 5SW . . . B 2 49.161 42.252 2.426 1 11.93 ? C12 5SW 201 A 1 HETATM 21 C C19 5SW . . . B 2 45.012 38.18 0.627 1 9.96 ? C19 5SW 201 A 1 HETATM 22 C C14 5SW . . . B 2 41.685 37.793 2.456 1 9.67 ? C14 5SW 201 A 1 HETATM 23 O O23 5SW . . . B 2 42.896 37.209 -0.029 1 11.36 ? O23 5SW 201 A 1 HETATM 24 O O22 5SW . . . B 2 43.32 39.058 4.355 1 13.9 ? O22 5SW 201 A 1 HETATM 25 N N15 5SW . . . B 2 41.406 36.748 3.491 1 12.86 ? N15 5SW 201 A 1 HETATM 26 O O11 5SW . . . B 2 50.916 40.914 0.883 1 10.78 ? O11 5SW 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #