data_6V1L # _model_server_result.job_id PxqLVg2rCarvoCfSGkJqMA _model_server_result.datetime_utc '2024-10-19 03:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6V1L # _exptl.entry_id 6V1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V1L _cell.length_a 41.94 _cell.length_b 51.29 _cell.length_c 52.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N3 O3' _chem_comp.formula_weight 353.415 _chem_comp.id 5U6 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O25 5U6 sing 1 n n O25 C17 5U6 sing 2 n n C13 C17 5U6 doub 3 n y C13 C21 5U6 sing 4 n y C17 C18 5U6 sing 5 n y C14 C21 5U6 sing 6 n n C14 N15 5U6 sing 7 n n C21 C20 5U6 doub 8 n y C16 N15 5U6 sing 9 n n C18 C10 5U6 sing 10 n n C18 C19 5U6 doub 11 n y N15 C24 5U6 sing 12 n n C1 C5 5U6 doub 13 n y C1 C2 5U6 sing 14 n y C10 C5 5U6 sing 15 n n C10 C9 5U6 doub 16 n n C20 C19 5U6 sing 17 n y C20 O22 5U6 sing 18 n n C5 C6 5U6 sing 19 n y C2 N3 5U6 doub 20 n y C9 N8 5U6 sing 21 n n C6 C4 5U6 doub 22 n y C6 C7 5U6 sing 23 n n N3 C4 5U6 sing 24 n y N8 C7 5U6 sing 25 n n N8 C12 5U6 sing 26 n n C7 O11 5U6 doub 27 n n O22 C23 5U6 sing 28 n n C4 H1 5U6 sing 29 n n C13 H2 5U6 sing 30 n n C24 H3 5U6 sing 31 n n C24 H4 5U6 sing 32 n n C24 H5 5U6 sing 33 n n C26 H6 5U6 sing 34 n n C26 H7 5U6 sing 35 n n C26 H8 5U6 sing 36 n n C1 H9 5U6 sing 37 n n C2 H10 5U6 sing 38 n n C16 H11 5U6 sing 39 n n C16 H12 5U6 sing 40 n n C16 H13 5U6 sing 41 n n C9 H14 5U6 sing 42 n n C12 H15 5U6 sing 43 n n C12 H16 5U6 sing 44 n n C12 H17 5U6 sing 45 n n C19 H18 5U6 sing 46 n n C14 H19 5U6 sing 47 n n C14 H20 5U6 sing 48 n n C23 H22 5U6 sing 49 n n C23 H23 5U6 sing 50 n n C23 H24 5U6 sing 51 n n # _atom_sites.entry_id 6V1L _atom_sites.fract_transf_matrix[1][1] 0.023844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5U6 A 1 201 1 5U6 5U6 . C 3 HOH A 1 301 14 HOH HOH . C 3 HOH A 2 302 45 HOH HOH . C 3 HOH A 3 303 32 HOH HOH . C 3 HOH A 4 304 24 HOH HOH . C 3 HOH A 5 305 9 HOH HOH . C 3 HOH A 6 306 26 HOH HOH . C 3 HOH A 7 307 19 HOH HOH . C 3 HOH A 8 308 27 HOH HOH . C 3 HOH A 9 309 20 HOH HOH . C 3 HOH A 10 310 25 HOH HOH . C 3 HOH A 11 311 12 HOH HOH . C 3 HOH A 12 312 2 HOH HOH . C 3 HOH A 13 313 34 HOH HOH . C 3 HOH A 14 314 35 HOH HOH . C 3 HOH A 15 315 59 HOH HOH . C 3 HOH A 16 316 5 HOH HOH . C 3 HOH A 17 317 3 HOH HOH . C 3 HOH A 18 318 43 HOH HOH . C 3 HOH A 19 319 29 HOH HOH . C 3 HOH A 20 320 8 HOH HOH . C 3 HOH A 21 321 61 HOH HOH . C 3 HOH A 22 322 37 HOH HOH . C 3 HOH A 23 323 4 HOH HOH . C 3 HOH A 24 324 18 HOH HOH . C 3 HOH A 25 325 1 HOH HOH . C 3 HOH A 26 326 50 HOH HOH . C 3 HOH A 27 327 15 HOH HOH . C 3 HOH A 28 328 56 HOH HOH . C 3 HOH A 29 329 16 HOH HOH . C 3 HOH A 30 330 38 HOH HOH . C 3 HOH A 31 331 10 HOH HOH . C 3 HOH A 32 332 21 HOH HOH . C 3 HOH A 33 333 30 HOH HOH . C 3 HOH A 34 334 42 HOH HOH . C 3 HOH A 35 335 41 HOH HOH . C 3 HOH A 36 336 7 HOH HOH . C 3 HOH A 37 337 22 HOH HOH . C 3 HOH A 38 338 62 HOH HOH . C 3 HOH A 39 339 57 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 11 HOH HOH . C 3 HOH A 42 342 60 HOH HOH . C 3 HOH A 43 343 55 HOH HOH . C 3 HOH A 44 344 46 HOH HOH . C 3 HOH A 45 345 58 HOH HOH . C 3 HOH A 46 346 33 HOH HOH . C 3 HOH A 47 347 51 HOH HOH . C 3 HOH A 48 348 49 HOH HOH . C 3 HOH A 49 349 6 HOH HOH . C 3 HOH A 50 350 28 HOH HOH . C 3 HOH A 51 351 17 HOH HOH . C 3 HOH A 52 352 53 HOH HOH . C 3 HOH A 53 353 31 HOH HOH . C 3 HOH A 54 354 48 HOH HOH . C 3 HOH A 55 355 13 HOH HOH . C 3 HOH A 56 356 39 HOH HOH . C 3 HOH A 57 357 44 HOH HOH . C 3 HOH A 58 358 23 HOH HOH . C 3 HOH A 59 359 36 HOH HOH . C 3 HOH A 60 360 47 HOH HOH . C 3 HOH A 61 361 54 HOH HOH . C 3 HOH A 62 362 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5U6 . . . B 2 -17.239 15.472 -4.294 1 20.3 ? N3 5U6 201 A 1 HETATM 2 C C4 5U6 . . . B 2 -16.19 15.247 -5.126 1 17.62 ? C4 5U6 201 A 1 HETATM 3 C C5 5U6 . . . B 2 -16.53 12.826 -4.927 1 13.13 ? C5 5U6 201 A 1 HETATM 4 C C6 5U6 . . . B 2 -15.8 13.924 -5.475 1 14.09 ? C6 5U6 201 A 1 HETATM 5 C C7 5U6 . . . B 2 -14.718 13.672 -6.353 1 10.99 ? C7 5U6 201 A 1 HETATM 6 C C10 5U6 . . . B 2 -16.159 11.478 -5.241 1 15.7 ? C10 5U6 201 A 1 HETATM 7 C C13 5U6 . . . B 2 -17.758 9.294 -2.599 1 24.19 ? C13 5U6 201 A 1 HETATM 8 C C17 5U6 . . . B 2 -16.98 10.29 -3.222 1 19.3 ? C17 5U6 201 A 1 HETATM 9 C C20 5U6 . . . B 2 -18.443 8.463 -4.788 1 17.2 ? C20 5U6 201 A 1 HETATM 10 C C21 5U6 . . . B 2 -18.49 8.364 -3.37 1 24.12 ? C21 5U6 201 A 1 HETATM 11 C C24 5U6 . . . B 2 -21.173 9.028 -2.285 1 20.32 ? C24 5U6 201 A 1 HETATM 12 C C26 5U6 . . . B 2 -15.602 10.503 -1.29 1 22.7 ? C26 5U6 201 A 1 HETATM 13 C C18 5U6 . . . B 2 -16.918 10.402 -4.654 1 16.11 ? C18 5U6 201 A 1 HETATM 14 C C1 5U6 . . . B 2 -17.619 13.137 -4.062 1 8.07 ? C1 5U6 201 A 1 HETATM 15 N N8 5U6 . . . B 2 -14.371 12.376 -6.662 1 12.73 ? N8 5U6 201 A 1 HETATM 16 C C2 5U6 . . . B 2 -17.949 14.463 -3.743 1 10.59 ? C2 5U6 201 A 1 HETATM 17 C C16 5U6 . . . B 2 -21.743 6.6 -2.335 1 25.73 ? C16 5U6 201 A 1 HETATM 18 O O25 5U6 . . . B 2 -16.305 11.152 -2.387 1 25.62 ? O25 5U6 201 A 1 HETATM 19 C C9 5U6 . . . B 2 -15.073 11.303 -6.128 1 14.9 ? C9 5U6 201 A 1 HETATM 20 C C12 5U6 . . . B 2 -13.258 12.112 -7.557 1 5.97 ? C12 5U6 201 A 1 HETATM 21 C C19 5U6 . . . B 2 -17.665 9.47 -5.425 1 15.34 ? C19 5U6 201 A 1 HETATM 22 C C14 5U6 . . . B 2 -19.318 7.334 -2.663 1 26.55 ? C14 5U6 201 A 1 HETATM 23 O O22 5U6 . . . B 2 -19.149 7.566 -5.562 1 24.1 ? O22 5U6 201 A 1 HETATM 24 N N15 5U6 . . . B 2 -20.793 7.668 -2.794 1 25.4 ? N15 5U6 201 A 1 HETATM 25 O O11 5U6 . . . B 2 -14.079 14.653 -6.83 1 10.12 ? O11 5U6 201 A 1 HETATM 26 C C23 5U6 . . . B 2 -18.458 7.121 -6.749 1 14.94 ? C23 5U6 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #