data_6V2W # _model_server_result.job_id J_fbisnwuoC3Hl_JfH9q5Q _model_server_result.datetime_utc '2024-10-19 23:50:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 6V2W # _exptl.entry_id 6V2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6V2W _cell.length_a 116.278 _cell.length_b 116.278 _cell.length_c 129.739 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 C O2G ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc4 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc6 B OD1 ASN 199 B ASN 195 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc7 E O1B ANP . B ANP 801 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc8 E O2A ANP . B ANP 801 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6V2W _atom_sites.fract_transf_matrix[1][1] 0.0086 _atom_sites.fract_transf_matrix[1][2] 0.004965 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 3 ANP B 1 801 801 ANP ANP . F 4 MG B 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 42.44 -28.137 -2.837 1 71.65 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . C 3 42.255 -28.755 -1.484 1 68.02 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . C 3 41.793 -29.045 -3.953 1 58.03 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . C 3 41.756 -26.714 -2.865 1 52.23 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . C 3 44.685 -29.36 -3.849 1 75.93 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . C 3 43.836 -29.74 -5.016 1 66.39 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . C 3 46.147 -29.112 -4.318 1 65.47 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . C 3 44.089 -27.953 -3.161 1 77.15 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . C 3 43.794 -31.81 -2.917 1 77.84 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . C 3 42.528 -31.573 -3.64 1 58.87 -1 O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . C 3 43.579 -32.307 -1.486 1 84.72 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . C 3 44.684 -30.498 -2.785 1 80.18 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . C 3 44.649 -32.839 -3.749 1 58.53 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . C 3 45.862 -33.401 -3.215 1 53.09 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . C 3 46.513 -34.252 -4.277 1 62.77 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . C 3 45.543 -35.18 -4.813 1 53.8 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . C 3 47.079 -33.488 -5.474 1 78.85 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . C 3 48.287 -34.078 -5.943 1 84.63 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . C 3 45.959 -33.599 -6.509 1 69.13 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . C 3 46.464 -33.528 -7.837 1 80.3 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . C 3 45.407 -34.991 -6.207 1 58.17 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . C 3 43.999 -35.156 -6.551 1 59.57 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . C 3 42.946 -34.394 -6.118 1 61.95 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . C 3 41.783 -34.776 -6.587 1 65.6 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . C 3 42.092 -35.868 -7.383 1 57.25 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . C 3 41.297 -36.728 -8.165 1 53.71 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . C 3 39.971 -36.615 -8.278 1 50.45 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . C 3 41.921 -37.722 -8.837 1 56.85 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . C 3 43.248 -37.838 -8.729 1 57.59 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . C 3 44.099 -37.09 -8.023 1 66.6 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . C 3 43.455 -36.116 -7.368 1 60.03 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #