data_6V35
#
_model_server_result.job_id            1pSU-eBEwCEIyij0DUYfAw 
_model_server_result.datetime_utc      '2024-10-19 03:48:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":1103}' 
#
_entry.id    6V35 
#
_exptl.entry_id    6V35 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    40 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6V35 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 MA N N 
? 3 NA N N 
? 3 OA N N 
? 3 PA N N 
? 3 QA N N 
? 3 RA N N 
? 3 TA N N 
? 3 UA N N 
? 3 YA N N 
? 3 ZA N N 
? 3 AB N N 
? 3 BB N N 
? 3 CB N N 
? 3 DB N N 
? 3 EB N N 
? 3 GB N N 
? 3 HB N N 
? 3 IB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 54 E CYS 2054 1_555 B SG CYS 148 E CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 68 E CYS 2068 1_555 B SG CYS 119 E CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 72 E CYS 2072 1_555 B SG CYS 76 E CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 B SG CYS 84 E CYS 2084 1_555 B SG CYS 113 E CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 54 F CYS 2054 1_555 D SG CYS 148 F CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 D SG CYS 68 F CYS 2068 1_555 D SG CYS 119 F CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 72 F CYS 2072 1_555 D SG CYS 76 F CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 D SG CYS 84 F CYS 2084 1_555 D SG CYS 113 F CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 F SG CYS 54 G CYS 2054 1_555 F SG CYS 148 G CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 F SG CYS 68 G CYS 2068 1_555 F SG CYS 119 G CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 F SG CYS 72 G CYS 2072 1_555 F SG CYS 76 G CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf12 F SG CYS 84 G CYS 2084 1_555 F SG CYS 113 G CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 H SG CYS 54 H CYS 2054 1_555 H SG CYS 148 H CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 H SG CYS 68 H CYS 2068 1_555 H SG CYS 119 H CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 H SG CYS 72 H CYS 2072 1_555 H SG CYS 76 H CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf16 H SG CYS 84 H CYS 2084 1_555 H SG CYS 113 H CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 B ND2 ASN 53 E ASN 2053 1_555 T C1 NAG . E NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale2 B ND2 ASN 90 E ASN 2090 1_555 U C1 NAG . E NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale3 D ND2 ASN 53 F ASN 2053 1_555 JA C1 NAG . F NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale4 D ND2 ASN 90 F ASN 2090 1_555 KA C1 NAG . F NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 F ND2 ASN 53 G ASN 2053 1_555 VA C1 NAG . G NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale6 F ND2 ASN 90 G ASN 2090 1_555 WA C1 NAG . G NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 H ND2 ASN 53 H ASN 2053 1_555 JB C1 NAG . H NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale8 H ND2 ASN 90 H ASN 2090 1_555 KB C1 NAG . H NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
_atom_sites.entry_id                     6V35 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PGW A 1 3001 3001 PGW PGW . 
J 3 PGW A 1 3002 3003 PGW PGW . 
K 3 PGW A 1 3003 3004 PGW PGW . 
L 3 PGW A 1 3004 3006 PGW PGW . 
M 3 PGW A 1 3005 3008 PGW PGW . 
N 4 CLR A 1 3006 4004 CLR CLR . 
O 3 PGW A 1 3007 3002 PGW PGW . 
P 3 PGW A 1 3008 3005 PGW PGW . 
Q 3 PGW A 1 3009 3008 PGW PGW . 
R 3 PGW E 1 2301 3009 PGW PGW . 
S 3 PGW E 1 2302 3010 PGW PGW . 
T 5 NAG E 1 2303 4001 NAG NAG . 
U 5 NAG E 1 2304 4002 NAG NAG . 
V 4 CLR E 1 2305 4003 CLR CLR . 
W 3 PGW B 1 1101 3002 PGW PGW . 
X 3 PGW B 1 1102 3005 PGW PGW . 
Y 3 PGW B 1 1103 3007 PGW PGW . 
Z 3 PGW B 1 1104 3001 PGW PGW . 
AA 3 PGW B 1 1105 3002 PGW PGW . 
BA 3 PGW B 1 1106 3003 PGW PGW . 
CA 3 PGW B 1 1107 3004 PGW PGW . 
DA 3 PGW B 1 1108 3006 PGW PGW . 
EA 3 PGW B 1 1109 3008 PGW PGW . 
FA 4 CLR B 1 1110 4004 CLR CLR . 
GA 3 PGW F 1 2301 3007 PGW PGW . 
HA 3 PGW F 1 2302 3009 PGW PGW . 
IA 3 PGW F 1 2303 3010 PGW PGW . 
JA 5 NAG F 1 2304 4001 NAG NAG . 
KA 5 NAG F 1 2305 4002 NAG NAG . 
LA 4 CLR F 1 2306 4003 CLR CLR . 
MA 3 PGW C 1 1101 3005 PGW PGW . 
NA 3 PGW C 1 1102 3001 PGW PGW . 
OA 3 PGW C 1 1103 3003 PGW PGW . 
PA 3 PGW C 1 1104 3004 PGW PGW . 
QA 3 PGW C 1 1105 3006 PGW PGW . 
RA 3 PGW C 1 1106 3008 PGW PGW . 
SA 4 CLR C 1 1107 4004 CLR CLR . 
TA 3 PGW G 1 2301 3009 PGW PGW . 
UA 3 PGW G 1 2302 3010 PGW PGW . 
VA 5 NAG G 1 2303 4001 NAG NAG . 
WA 5 NAG G 1 2304 4002 NAG NAG . 
XA 4 CLR G 1 2305 4003 CLR CLR . 
YA 3 PGW D 1 1101 3002 PGW PGW . 
ZA 3 PGW D 1 1102 3005 PGW PGW . 
AB 3 PGW D 1 1103 3007 PGW PGW . 
BB 3 PGW D 1 1104 3001 PGW PGW . 
CB 3 PGW D 1 1105 3003 PGW PGW . 
DB 3 PGW D 1 1106 3004 PGW PGW . 
EB 3 PGW D 1 1107 3006 PGW PGW . 
FB 4 CLR D 1 1108 4004 CLR CLR . 
GB 3 PGW H 1 2301 3007 PGW PGW . 
HB 3 PGW H 1 2302 3009 PGW PGW . 
IB 3 PGW H 1 2303 3010 PGW PGW . 
JB 5 NAG H 1 2304 4001 NAG NAG . 
KB 5 NAG H 1 2305 4002 NAG NAG . 
LB 4 CLR H 1 2306 4003 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . OA 3 190.532 176.427 210.183 1 115.04 ? CAD PGW 1103 C 1 
HETATM 2 O OAE PGW . . . OA 3 189.947 177.566 210.748 1 115.04 ? OAE PGW 1103 C 1 
HETATM 3 O OAF PGW . . . OA 3 192.048 178.195 209.677 1 115.04 ? OAF PGW 1103 C 1 
HETATM 4 P P PGW . . . OA 3 194.039 175.563 207.178 1 115.04 ? P PGW 1103 C 1 
HETATM 5 C C01 PGW . . . OA 3 194.779 173.951 203.797 1 115.04 ? C01 PGW 1103 C 1 
HETATM 6 C C1 PGW . . . OA 3 197.177 176.737 203.498 1 115.04 ? C1 PGW 1103 C 1 
HETATM 7 O O01 PGW . . . OA 3 195.966 176.034 203.561 1 115.04 ? O01 PGW 1103 C 1 
HETATM 8 C C02 PGW . . . OA 3 196.018 174.772 204.166 1 115.04 ? C02 PGW 1103 C 1 
HETATM 9 C C2 PGW . . . OA 3 197.154 178.248 203.287 1 115.04 ? C2 PGW 1103 C 1 
HETATM 10 O O02 PGW . . . OA 3 198.215 176.175 203.604 1 115.04 ? O02 PGW 1103 C 1 
HETATM 11 C C03 PGW . . . OA 3 196.052 174.941 205.683 1 115.04 ? C03 PGW 1103 C 1 
HETATM 12 C C3 PGW . . . OA 3 198.171 178.641 202.219 1 115.04 ? C3 PGW 1103 C 1 
HETATM 13 O O03 PGW . . . OA 3 194.856 173.488 202.475 1 115.04 ? O03 PGW 1103 C 1 
HETATM 14 C C04 PGW . . . OA 3 191.767 176.496 208.033 1 115.04 ? C04 PGW 1103 C 1 
HETATM 15 C C4 PGW . . . OA 3 197.858 177.949 200.894 1 115.04 ? C4 PGW 1103 C 1 
HETATM 16 O O04 PGW . . . OA 3 192.737 173.441 201.681 1 115.04 ? O04 PGW 1103 C 1 
HETATM 17 C C05 PGW . . . OA 3 191.847 176.821 209.519 1 115.04 ? C05 PGW 1103 C 1 
HETATM 18 C C5 PGW . . . OA 3 196.735 178.681 200.168 1 115.04 ? C5 PGW 1103 C 1 
HETATM 19 C C06 PGW . . . OA 3 196.145 177.775 193.94 1 115.04 ? C06 PGW 1103 C 1 
HETATM 20 C C6 PGW . . . OA 3 196.689 178.189 198.726 1 115.04 ? C6 PGW 1103 C 1 
HETATM 21 C C07 PGW . . . OA 3 195.531 179.025 193.316 1 115.04 ? C07 PGW 1103 C 1 
HETATM 22 C C7 PGW . . . OA 3 197.875 178.771 197.965 1 115.04 ? C7 PGW 1103 C 1 
HETATM 23 C C08 PGW . . . OA 3 196.582 179.755 192.488 1 115.04 ? C08 PGW 1103 C 1 
HETATM 24 C C8 PGW . . . OA 3 197.371 179.822 196.986 1 115.04 ? C8 PGW 1103 C 1 
HETATM 25 C C09 PGW . . . OA 3 197.013 178.857 191.337 1 115.04 ? C09 PGW 1103 C 1 
HETATM 26 C C9 PGW . . . OA 3 196.37 179.163 196.048 1 115.04 ? C9 PGW 1103 C 1 
HETATM 27 C C10 PGW . . . OA 3 197.047 178.188 195.095 1 115.04 ? C10 PGW 1103 C 1 
HETATM 28 C C11 PGW . . . OA 3 195.853 178.722 190.359 1 115.04 ? C11 PGW 1103 C 1 
HETATM 29 O O11 PGW . . . OA 3 195.182 175.963 206.067 1 115.04 ? O11 PGW 1103 C 1 
HETATM 30 C C12 PGW . . . OA 3 195.878 179.892 189.383 1 115.04 ? C12 PGW 1103 C 1 
HETATM 31 O O12 PGW . . . OA 3 192.98 176.8 207.409 1 115.04 ? O12 PGW 1103 C 1 
HETATM 32 C C13 PGW . . . OA 3 195.348 179.416 188.033 1 115.04 ? C13 PGW 1103 C 1 
HETATM 33 O O13 PGW . . . OA 3 194.656 175.155 208.434 1 115.04 ? O13 PGW 1103 C 1 
HETATM 34 C C14 PGW . . . OA 3 195.626 180.471 186.968 1 115.04 ? C14 PGW 1103 C 1 
HETATM 35 O O14 PGW . . . OA 3 193.345 174.338 206.796 1 115.04 ? O14 PGW 1103 C 1 
HETATM 36 C C15 PGW . . . OA 3 193.695 172.665 194.39 1 115.04 ? C15 PGW 1103 C 1 
HETATM 37 C C16 PGW . . . OA 3 193.814 173.029 192.914 1 115.04 ? C16 PGW 1103 C 1 
HETATM 38 C C19 PGW . . . OA 3 193.708 172.825 202.003 1 115.04 ? C19 PGW 1103 C 1 
HETATM 39 C C20 PGW . . . OA 3 193.722 171.299 201.898 1 115.04 ? C20 PGW 1103 C 1 
HETATM 40 C C21 PGW . . . OA 3 194.124 170.885 200.485 1 115.04 ? C21 PGW 1103 C 1 
HETATM 41 C C22 PGW . . . OA 3 195.639 170.969 200.331 1 115.04 ? C22 PGW 1103 C 1 
HETATM 42 C C23 PGW . . . OA 3 195.998 171.085 198.852 1 115.04 ? C23 PGW 1103 C 1 
HETATM 43 C C24 PGW . . . OA 3 195.488 169.863 198.091 1 115.04 ? C24 PGW 1103 C 1 
HETATM 44 C C25 PGW . . . OA 3 195.542 170.124 196.587 1 115.04 ? C25 PGW 1103 C 1 
HETATM 45 C C26 PGW . . . OA 3 194.651 171.313 196.237 1 115.04 ? C26 PGW 1103 C 1 
HETATM 46 C C27 PGW . . . OA 3 194.768 171.641 194.75 1 115.04 ? C27 PGW 1103 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           46 
#