data_6V35 # _model_server_result.job_id 3kr-z4tA8_kmrjuIgkbV_g _model_server_result.datetime_utc '2024-11-30 00:02:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EB","auth_seq_id":1107}' # _entry.id 6V35 # _exptl.entry_id 6V35 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 40 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V35 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N ? 3 QA N N ? 3 RA N N ? 3 TA N N ? 3 UA N N ? 3 YA N N ? 3 ZA N N ? 3 AB N N ? 3 BB N N ? 3 CB N N ? 3 DB N N ? 3 EB N N ? 3 GB N N ? 3 HB N N ? 3 IB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 54 E CYS 2054 1_555 B SG CYS 148 E CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 68 E CYS 2068 1_555 B SG CYS 119 E CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 72 E CYS 2072 1_555 B SG CYS 76 E CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 84 E CYS 2084 1_555 B SG CYS 113 E CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 D SG CYS 54 F CYS 2054 1_555 D SG CYS 148 F CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 D SG CYS 68 F CYS 2068 1_555 D SG CYS 119 F CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 D SG CYS 72 F CYS 2072 1_555 D SG CYS 76 F CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 D SG CYS 84 F CYS 2084 1_555 D SG CYS 113 F CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 F SG CYS 54 G CYS 2054 1_555 F SG CYS 148 G CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 F SG CYS 68 G CYS 2068 1_555 F SG CYS 119 G CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 F SG CYS 72 G CYS 2072 1_555 F SG CYS 76 G CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 F SG CYS 84 G CYS 2084 1_555 F SG CYS 113 G CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 H SG CYS 54 H CYS 2054 1_555 H SG CYS 148 H CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf14 H SG CYS 68 H CYS 2068 1_555 H SG CYS 119 H CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 H SG CYS 72 H CYS 2072 1_555 H SG CYS 76 H CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 H SG CYS 84 H CYS 2084 1_555 H SG CYS 113 H CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 53 E ASN 2053 1_555 T C1 NAG . E NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale2 B ND2 ASN 90 E ASN 2090 1_555 U C1 NAG . E NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 D ND2 ASN 53 F ASN 2053 1_555 JA C1 NAG . F NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 D ND2 ASN 90 F ASN 2090 1_555 KA C1 NAG . F NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 F ND2 ASN 53 G ASN 2053 1_555 VA C1 NAG . G NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale6 F ND2 ASN 90 G ASN 2090 1_555 WA C1 NAG . G NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale7 H ND2 ASN 53 H ASN 2053 1_555 JB C1 NAG . H NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale8 H ND2 ASN 90 H ASN 2090 1_555 KB C1 NAG . H NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 342 n n CAD HAD PGW sing 343 n n CAD HADA PGW sing 344 n n OAE CAD PGW sing 345 n n OAE HOAE PGW sing 346 n n OAF C05 PGW sing 347 n n OAF HOAF PGW sing 348 n n P O13 PGW sing 349 n n P O11 PGW sing 350 n n C01 O03 PGW sing 351 n n C01 C02 PGW sing 352 n n C01 H01 PGW sing 353 n n C01 H01A PGW sing 354 n n C1 C2 PGW sing 355 n n O01 C1 PGW sing 356 n n C02 O01 PGW sing 357 n n C02 H02 PGW sing 358 n n C2 C3 PGW sing 359 n n C2 H2 PGW sing 360 n n C2 H2A PGW sing 361 n n O02 C1 PGW doub 362 n n C03 C02 PGW sing 363 n n C03 H03 PGW sing 364 n n C03 H03A PGW sing 365 n n C3 C4 PGW sing 366 n n C3 H3 PGW sing 367 n n C3 H3A PGW sing 368 n n C04 C05 PGW sing 369 n n C04 O12 PGW sing 370 n n C04 H04 PGW sing 371 n n C04 H04A PGW sing 372 n n C4 C5 PGW sing 373 n n C4 H4 PGW sing 374 n n C4 H4A PGW sing 375 n n O04 C19 PGW doub 376 n n C05 H05 PGW sing 377 n n C5 C6 PGW sing 378 n n C5 H5 PGW sing 379 n n C5 H5A PGW sing 380 n n C06 C07 PGW sing 381 n n C06 H06 PGW sing 382 n n C06 H06A PGW sing 383 n n C6 C7 PGW sing 384 n n C6 H6 PGW sing 385 n n C6 H6A PGW sing 386 n n C07 H07 PGW sing 387 n n C07 H07A PGW sing 388 n n C7 C8 PGW sing 389 n n C7 H7 PGW sing 390 n n C7 H7A PGW sing 391 n n C08 C07 PGW sing 392 n n C08 H08 PGW sing 393 n n C08 H08A PGW sing 394 n n C8 C9 PGW sing 395 n n C8 H8 PGW sing 396 n n C8 H8A PGW sing 397 n n C09 C08 PGW sing 398 n n C09 C11 PGW sing 399 n n C09 H09 PGW sing 400 n n C09 H09A PGW sing 401 n n C9 C10 PGW doub 402 z n C10 C06 PGW sing 403 n n C11 H11 PGW sing 404 n n C11 H11A PGW sing 405 n n O11 C03 PGW sing 406 n n C12 C11 PGW sing 407 n n C12 H12 PGW sing 408 n n C12 H12A PGW sing 409 n n O12 P PGW sing 410 n n C13 C12 PGW sing 411 n n C13 C14 PGW sing 412 n n C13 H13 PGW sing 413 n n C13 H13A PGW sing 414 n n O13 HO13 PGW sing 415 n n C14 H14 PGW sing 416 n n C14 H14A PGW sing 417 n n C14 H14B PGW sing 418 n n O14 P PGW doub 419 n n C15 C16 PGW sing 420 n n C15 H15 PGW sing 421 n n C15 H15A PGW sing 422 n n C16 H16 PGW sing 423 n n C16 H16A PGW sing 424 n n C17 C16 PGW sing 425 n n C17 C18 PGW sing 426 n n C17 H17 PGW sing 427 n n C17 H17A PGW sing 428 n n C18 C28 PGW sing 429 n n C18 H18 PGW sing 430 n n C18 H18A PGW sing 431 n n C19 O03 PGW sing 432 n n C19 C20 PGW sing 433 n n C20 C21 PGW sing 434 n n C20 H20 PGW sing 435 n n C20 H20A PGW sing 436 n n C21 C22 PGW sing 437 n n C21 H21 PGW sing 438 n n C21 H21A PGW sing 439 n n C22 C23 PGW sing 440 n n C22 H22 PGW sing 441 n n C22 H22A PGW sing 442 n n C23 C24 PGW sing 443 n n C23 H23 PGW sing 444 n n C23 H23A PGW sing 445 n n C24 C25 PGW sing 446 n n C24 H24 PGW sing 447 n n C24 H24A PGW sing 448 n n C25 C26 PGW sing 449 n n C25 H25 PGW sing 450 n n C25 H25A PGW sing 451 n n C26 C27 PGW sing 452 n n C26 H26 PGW sing 453 n n C26 H26A PGW sing 454 n n C27 C15 PGW sing 455 n n C27 H27 PGW sing 456 n n C27 H27A PGW sing 457 n n C28 H28 PGW sing 458 n n C28 H28A PGW sing 459 n n C29 H29 PGW sing 460 n n C29 H29A PGW sing 461 n n C29 H29B PGW sing 462 n n C30 C28 PGW sing 463 n n C30 C29 PGW sing 464 n n C30 H30 PGW sing 465 n n C30 H30A PGW sing 466 n n C9 H9 PGW sing 467 n n C10 H10 PGW sing 468 n n # _atom_sites.entry_id 6V35 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PGW A 1 3001 3001 PGW PGW . J 3 PGW A 1 3002 3003 PGW PGW . K 3 PGW A 1 3003 3004 PGW PGW . L 3 PGW A 1 3004 3006 PGW PGW . M 3 PGW A 1 3005 3008 PGW PGW . N 4 CLR A 1 3006 4004 CLR CLR . O 3 PGW A 1 3007 3002 PGW PGW . P 3 PGW A 1 3008 3005 PGW PGW . Q 3 PGW A 1 3009 3008 PGW PGW . R 3 PGW E 1 2301 3009 PGW PGW . S 3 PGW E 1 2302 3010 PGW PGW . T 5 NAG E 1 2303 4001 NAG NAG . U 5 NAG E 1 2304 4002 NAG NAG . V 4 CLR E 1 2305 4003 CLR CLR . W 3 PGW B 1 1101 3002 PGW PGW . X 3 PGW B 1 1102 3005 PGW PGW . Y 3 PGW B 1 1103 3007 PGW PGW . Z 3 PGW B 1 1104 3001 PGW PGW . AA 3 PGW B 1 1105 3002 PGW PGW . BA 3 PGW B 1 1106 3003 PGW PGW . CA 3 PGW B 1 1107 3004 PGW PGW . DA 3 PGW B 1 1108 3006 PGW PGW . EA 3 PGW B 1 1109 3008 PGW PGW . FA 4 CLR B 1 1110 4004 CLR CLR . GA 3 PGW F 1 2301 3007 PGW PGW . HA 3 PGW F 1 2302 3009 PGW PGW . IA 3 PGW F 1 2303 3010 PGW PGW . JA 5 NAG F 1 2304 4001 NAG NAG . KA 5 NAG F 1 2305 4002 NAG NAG . LA 4 CLR F 1 2306 4003 CLR CLR . MA 3 PGW C 1 1101 3005 PGW PGW . NA 3 PGW C 1 1102 3001 PGW PGW . OA 3 PGW C 1 1103 3003 PGW PGW . PA 3 PGW C 1 1104 3004 PGW PGW . QA 3 PGW C 1 1105 3006 PGW PGW . RA 3 PGW C 1 1106 3008 PGW PGW . SA 4 CLR C 1 1107 4004 CLR CLR . TA 3 PGW G 1 2301 3009 PGW PGW . UA 3 PGW G 1 2302 3010 PGW PGW . VA 5 NAG G 1 2303 4001 NAG NAG . WA 5 NAG G 1 2304 4002 NAG NAG . XA 4 CLR G 1 2305 4003 CLR CLR . YA 3 PGW D 1 1101 3002 PGW PGW . ZA 3 PGW D 1 1102 3005 PGW PGW . AB 3 PGW D 1 1103 3007 PGW PGW . BB 3 PGW D 1 1104 3001 PGW PGW . CB 3 PGW D 1 1105 3003 PGW PGW . DB 3 PGW D 1 1106 3004 PGW PGW . EB 3 PGW D 1 1107 3006 PGW PGW . FB 4 CLR D 1 1108 4004 CLR CLR . GB 3 PGW H 1 2301 3007 PGW PGW . HB 3 PGW H 1 2302 3009 PGW PGW . IB 3 PGW H 1 2303 3010 PGW PGW . JB 5 NAG H 1 2304 4001 NAG NAG . KB 5 NAG H 1 2305 4002 NAG NAG . LB 4 CLR H 1 2306 4003 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 PGW . . . EB 3 157.927 183.642 163.483 1 107.09 ? C15 PGW 1107 D 1 HETATM 2 C C16 PGW . . . EB 3 157.44 183.827 162.048 1 107.09 ? C16 PGW 1107 D 1 HETATM 3 C C17 PGW . . . EB 3 157.02 185.279 161.835 1 107.09 ? C17 PGW 1107 D 1 HETATM 4 C C19 PGW . . . EB 3 157.511 175.741 170.987 1 107.09 ? C19 PGW 1107 D 1 HETATM 5 C C20 PGW . . . EB 3 156.703 176.668 170.085 1 107.09 ? C20 PGW 1107 D 1 HETATM 6 C C21 PGW . . . EB 3 157.638 177.692 169.456 1 107.09 ? C21 PGW 1107 D 1 HETATM 7 C C22 PGW . . . EB 3 156.962 178.484 168.347 1 107.09 ? C22 PGW 1107 D 1 HETATM 8 C C23 PGW . . . EB 3 157.949 178.94 167.281 1 107.09 ? C23 PGW 1107 D 1 HETATM 9 C C24 PGW . . . EB 3 157.959 180.461 167.224 1 107.09 ? C24 PGW 1107 D 1 HETATM 10 C C25 PGW . . . EB 3 157.424 180.893 165.865 1 107.09 ? C25 PGW 1107 D 1 HETATM 11 C C26 PGW . . . EB 3 158.355 181.935 165.258 1 107.09 ? C26 PGW 1107 D 1 HETATM 12 C C27 PGW . . . EB 3 157.952 182.151 163.804 1 107.09 ? C27 PGW 1107 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #