data_6V35
#
_model_server_result.job_id            u8J-0vXjn4ddSyq9GiJFQA 
_model_server_result.datetime_utc      '2024-11-26 13:31:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":2302}' 
#
_entry.id    6V35 
#
_exptl.entry_id    6V35 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    40 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6V35 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 MA N N 
? 3 NA N N 
? 3 OA N N 
? 3 PA N N 
? 3 QA N N 
? 3 RA N N 
? 3 TA N N 
? 3 UA N N 
? 3 YA N N 
? 3 ZA N N 
? 3 AB N N 
? 3 BB N N 
? 3 CB N N 
? 3 DB N N 
? 3 EB N N 
? 3 GB N N 
? 3 HB N N 
? 3 IB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 54 E CYS 2054 1_555 B SG CYS 148 E CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 68 E CYS 2068 1_555 B SG CYS 119 E CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 72 E CYS 2072 1_555 B SG CYS 76 E CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 B SG CYS 84 E CYS 2084 1_555 B SG CYS 113 E CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 54 F CYS 2054 1_555 D SG CYS 148 F CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 D SG CYS 68 F CYS 2068 1_555 D SG CYS 119 F CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 72 F CYS 2072 1_555 D SG CYS 76 F CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 D SG CYS 84 F CYS 2084 1_555 D SG CYS 113 F CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 F SG CYS 54 G CYS 2054 1_555 F SG CYS 148 G CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 F SG CYS 68 G CYS 2068 1_555 F SG CYS 119 G CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 F SG CYS 72 G CYS 2072 1_555 F SG CYS 76 G CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf12 F SG CYS 84 G CYS 2084 1_555 F SG CYS 113 G CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 H SG CYS 54 H CYS 2054 1_555 H SG CYS 148 H CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 H SG CYS 68 H CYS 2068 1_555 H SG CYS 119 H CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 H SG CYS 72 H CYS 2072 1_555 H SG CYS 76 H CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf16 H SG CYS 84 H CYS 2084 1_555 H SG CYS 113 H CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 B ND2 ASN 53 E ASN 2053 1_555 T C1 NAG . E NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale2 B ND2 ASN 90 E ASN 2090 1_555 U C1 NAG . E NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale3 D ND2 ASN 53 F ASN 2053 1_555 JA C1 NAG . F NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale4 D ND2 ASN 90 F ASN 2090 1_555 KA C1 NAG . F NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 F ND2 ASN 53 G ASN 2053 1_555 VA C1 NAG . G NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale6 F ND2 ASN 90 G ASN 2090 1_555 WA C1 NAG . G NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 H ND2 ASN 53 H ASN 2053 1_555 JB C1 NAG . H NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale8 H ND2 ASN 90 H ASN 2090 1_555 KB C1 NAG . H NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 342 n n 
CAD HAD PGW sing 343 n n 
CAD HADA PGW sing 344 n n 
OAE CAD PGW sing 345 n n 
OAE HOAE PGW sing 346 n n 
OAF C05 PGW sing 347 n n 
OAF HOAF PGW sing 348 n n 
P O13 PGW sing 349 n n 
P O11 PGW sing 350 n n 
C01 O03 PGW sing 351 n n 
C01 C02 PGW sing 352 n n 
C01 H01 PGW sing 353 n n 
C01 H01A PGW sing 354 n n 
C1 C2 PGW sing 355 n n 
O01 C1 PGW sing 356 n n 
C02 O01 PGW sing 357 n n 
C02 H02 PGW sing 358 n n 
C2 C3 PGW sing 359 n n 
C2 H2 PGW sing 360 n n 
C2 H2A PGW sing 361 n n 
O02 C1 PGW doub 362 n n 
C03 C02 PGW sing 363 n n 
C03 H03 PGW sing 364 n n 
C03 H03A PGW sing 365 n n 
C3 C4 PGW sing 366 n n 
C3 H3 PGW sing 367 n n 
C3 H3A PGW sing 368 n n 
C04 C05 PGW sing 369 n n 
C04 O12 PGW sing 370 n n 
C04 H04 PGW sing 371 n n 
C04 H04A PGW sing 372 n n 
C4 C5 PGW sing 373 n n 
C4 H4 PGW sing 374 n n 
C4 H4A PGW sing 375 n n 
O04 C19 PGW doub 376 n n 
C05 H05 PGW sing 377 n n 
C5 C6 PGW sing 378 n n 
C5 H5 PGW sing 379 n n 
C5 H5A PGW sing 380 n n 
C06 C07 PGW sing 381 n n 
C06 H06 PGW sing 382 n n 
C06 H06A PGW sing 383 n n 
C6 C7 PGW sing 384 n n 
C6 H6 PGW sing 385 n n 
C6 H6A PGW sing 386 n n 
C07 H07 PGW sing 387 n n 
C07 H07A PGW sing 388 n n 
C7 C8 PGW sing 389 n n 
C7 H7 PGW sing 390 n n 
C7 H7A PGW sing 391 n n 
C08 C07 PGW sing 392 n n 
C08 H08 PGW sing 393 n n 
C08 H08A PGW sing 394 n n 
C8 C9 PGW sing 395 n n 
C8 H8 PGW sing 396 n n 
C8 H8A PGW sing 397 n n 
C09 C08 PGW sing 398 n n 
C09 C11 PGW sing 399 n n 
C09 H09 PGW sing 400 n n 
C09 H09A PGW sing 401 n n 
C9 C10 PGW doub 402 z n 
C10 C06 PGW sing 403 n n 
C11 H11 PGW sing 404 n n 
C11 H11A PGW sing 405 n n 
O11 C03 PGW sing 406 n n 
C12 C11 PGW sing 407 n n 
C12 H12 PGW sing 408 n n 
C12 H12A PGW sing 409 n n 
O12 P PGW sing 410 n n 
C13 C12 PGW sing 411 n n 
C13 C14 PGW sing 412 n n 
C13 H13 PGW sing 413 n n 
C13 H13A PGW sing 414 n n 
O13 HO13 PGW sing 415 n n 
C14 H14 PGW sing 416 n n 
C14 H14A PGW sing 417 n n 
C14 H14B PGW sing 418 n n 
O14 P PGW doub 419 n n 
C15 C16 PGW sing 420 n n 
C15 H15 PGW sing 421 n n 
C15 H15A PGW sing 422 n n 
C16 H16 PGW sing 423 n n 
C16 H16A PGW sing 424 n n 
C17 C16 PGW sing 425 n n 
C17 C18 PGW sing 426 n n 
C17 H17 PGW sing 427 n n 
C17 H17A PGW sing 428 n n 
C18 C28 PGW sing 429 n n 
C18 H18 PGW sing 430 n n 
C18 H18A PGW sing 431 n n 
C19 O03 PGW sing 432 n n 
C19 C20 PGW sing 433 n n 
C20 C21 PGW sing 434 n n 
C20 H20 PGW sing 435 n n 
C20 H20A PGW sing 436 n n 
C21 C22 PGW sing 437 n n 
C21 H21 PGW sing 438 n n 
C21 H21A PGW sing 439 n n 
C22 C23 PGW sing 440 n n 
C22 H22 PGW sing 441 n n 
C22 H22A PGW sing 442 n n 
C23 C24 PGW sing 443 n n 
C23 H23 PGW sing 444 n n 
C23 H23A PGW sing 445 n n 
C24 C25 PGW sing 446 n n 
C24 H24 PGW sing 447 n n 
C24 H24A PGW sing 448 n n 
C25 C26 PGW sing 449 n n 
C25 H25 PGW sing 450 n n 
C25 H25A PGW sing 451 n n 
C26 C27 PGW sing 452 n n 
C26 H26 PGW sing 453 n n 
C26 H26A PGW sing 454 n n 
C27 C15 PGW sing 455 n n 
C27 H27 PGW sing 456 n n 
C27 H27A PGW sing 457 n n 
C28 H28 PGW sing 458 n n 
C28 H28A PGW sing 459 n n 
C29 H29 PGW sing 460 n n 
C29 H29A PGW sing 461 n n 
C29 H29B PGW sing 462 n n 
C30 C28 PGW sing 463 n n 
C30 C29 PGW sing 464 n n 
C30 H30 PGW sing 465 n n 
C30 H30A PGW sing 466 n n 
C9 H9 PGW sing 467 n n 
C10 H10 PGW sing 468 n n 
#
_atom_sites.entry_id                     6V35 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PGW A 1 3001 3001 PGW PGW . 
J 3 PGW A 1 3002 3003 PGW PGW . 
K 3 PGW A 1 3003 3004 PGW PGW . 
L 3 PGW A 1 3004 3006 PGW PGW . 
M 3 PGW A 1 3005 3008 PGW PGW . 
N 4 CLR A 1 3006 4004 CLR CLR . 
O 3 PGW A 1 3007 3002 PGW PGW . 
P 3 PGW A 1 3008 3005 PGW PGW . 
Q 3 PGW A 1 3009 3008 PGW PGW . 
R 3 PGW E 1 2301 3009 PGW PGW . 
S 3 PGW E 1 2302 3010 PGW PGW . 
T 5 NAG E 1 2303 4001 NAG NAG . 
U 5 NAG E 1 2304 4002 NAG NAG . 
V 4 CLR E 1 2305 4003 CLR CLR . 
W 3 PGW B 1 1101 3002 PGW PGW . 
X 3 PGW B 1 1102 3005 PGW PGW . 
Y 3 PGW B 1 1103 3007 PGW PGW . 
Z 3 PGW B 1 1104 3001 PGW PGW . 
AA 3 PGW B 1 1105 3002 PGW PGW . 
BA 3 PGW B 1 1106 3003 PGW PGW . 
CA 3 PGW B 1 1107 3004 PGW PGW . 
DA 3 PGW B 1 1108 3006 PGW PGW . 
EA 3 PGW B 1 1109 3008 PGW PGW . 
FA 4 CLR B 1 1110 4004 CLR CLR . 
GA 3 PGW F 1 2301 3007 PGW PGW . 
HA 3 PGW F 1 2302 3009 PGW PGW . 
IA 3 PGW F 1 2303 3010 PGW PGW . 
JA 5 NAG F 1 2304 4001 NAG NAG . 
KA 5 NAG F 1 2305 4002 NAG NAG . 
LA 4 CLR F 1 2306 4003 CLR CLR . 
MA 3 PGW C 1 1101 3005 PGW PGW . 
NA 3 PGW C 1 1102 3001 PGW PGW . 
OA 3 PGW C 1 1103 3003 PGW PGW . 
PA 3 PGW C 1 1104 3004 PGW PGW . 
QA 3 PGW C 1 1105 3006 PGW PGW . 
RA 3 PGW C 1 1106 3008 PGW PGW . 
SA 4 CLR C 1 1107 4004 CLR CLR . 
TA 3 PGW G 1 2301 3009 PGW PGW . 
UA 3 PGW G 1 2302 3010 PGW PGW . 
VA 5 NAG G 1 2303 4001 NAG NAG . 
WA 5 NAG G 1 2304 4002 NAG NAG . 
XA 4 CLR G 1 2305 4003 CLR CLR . 
YA 3 PGW D 1 1101 3002 PGW PGW . 
ZA 3 PGW D 1 1102 3005 PGW PGW . 
AB 3 PGW D 1 1103 3007 PGW PGW . 
BB 3 PGW D 1 1104 3001 PGW PGW . 
CB 3 PGW D 1 1105 3003 PGW PGW . 
DB 3 PGW D 1 1106 3004 PGW PGW . 
EB 3 PGW D 1 1107 3006 PGW PGW . 
FB 4 CLR D 1 1108 4004 CLR CLR . 
GB 3 PGW H 1 2301 3007 PGW PGW . 
HB 3 PGW H 1 2302 3009 PGW PGW . 
IB 3 PGW H 1 2303 3010 PGW PGW . 
JB 5 NAG H 1 2304 4001 NAG NAG . 
KB 5 NAG H 1 2305 4002 NAG NAG . 
LB 4 CLR H 1 2306 4003 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGW . . . UA 3 206.963 186.01 198.831 1 108.87 ? C1 PGW 2302 G 1 
HETATM 2 C C2 PGW . . . UA 3 206.133 185.049 197.984 1 108.87 ? C2 PGW 2302 G 1 
HETATM 3 C C3 PGW . . . UA 3 207.032 184.392 196.941 1 108.87 ? C3 PGW 2302 G 1 
HETATM 4 C C4 PGW . . . UA 3 207.456 185.436 195.912 1 108.87 ? C4 PGW 2302 G 1 
HETATM 5 C C5 PGW . . . UA 3 206.62 185.276 194.645 1 108.87 ? C5 PGW 2302 G 1 
HETATM 6 C C6 PGW . . . UA 3 207.341 184.344 193.675 1 108.87 ? C6 PGW 2302 G 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    222 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#