data_6V35
#
_model_server_result.job_id            vBB0W8_GdIDr9x7P9Oxnbg 
_model_server_result.datetime_utc      '2024-11-29 23:17:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":2303}' 
#
_entry.id    6V35 
#
_exptl.entry_id    6V35 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6V35 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 T N N 
? 5 U N N 
? 5 JA N N 
? 5 KA N N 
? 5 VA N N 
? 5 WA N N 
? 5 JB N N 
? 5 KB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 54 E CYS 2054 1_555 B SG CYS 148 E CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 68 E CYS 2068 1_555 B SG CYS 119 E CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 72 E CYS 2072 1_555 B SG CYS 76 E CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 B SG CYS 84 E CYS 2084 1_555 B SG CYS 113 E CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 54 F CYS 2054 1_555 D SG CYS 148 F CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 D SG CYS 68 F CYS 2068 1_555 D SG CYS 119 F CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 72 F CYS 2072 1_555 D SG CYS 76 F CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 D SG CYS 84 F CYS 2084 1_555 D SG CYS 113 F CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 F SG CYS 54 G CYS 2054 1_555 F SG CYS 148 G CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 F SG CYS 68 G CYS 2068 1_555 F SG CYS 119 G CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 F SG CYS 72 G CYS 2072 1_555 F SG CYS 76 G CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf12 F SG CYS 84 G CYS 2084 1_555 F SG CYS 113 G CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 H SG CYS 54 H CYS 2054 1_555 H SG CYS 148 H CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 H SG CYS 68 H CYS 2068 1_555 H SG CYS 119 H CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 H SG CYS 72 H CYS 2072 1_555 H SG CYS 76 H CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf16 H SG CYS 84 H CYS 2084 1_555 H SG CYS 113 H CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 B ND2 ASN 53 E ASN 2053 1_555 T C1 NAG . E NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale2 B ND2 ASN 90 E ASN 2090 1_555 U C1 NAG . E NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale3 D ND2 ASN 53 F ASN 2053 1_555 JA C1 NAG . F NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale4 D ND2 ASN 90 F ASN 2090 1_555 KA C1 NAG . F NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 F ND2 ASN 53 G ASN 2053 1_555 VA C1 NAG . G NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale6 F ND2 ASN 90 G ASN 2090 1_555 WA C1 NAG . G NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 H ND2 ASN 53 H ASN 2053 1_555 JB C1 NAG . H NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale8 H ND2 ASN 90 H ASN 2090 1_555 KB C1 NAG . H NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 312 n n 
C1 O1 NAG sing 313 n n 
C1 O5 NAG sing 314 n n 
C1 H1 NAG sing 315 n n 
C2 C3 NAG sing 316 n n 
C2 N2 NAG sing 317 n n 
C2 H2 NAG sing 318 n n 
C3 C4 NAG sing 319 n n 
C3 O3 NAG sing 320 n n 
C3 H3 NAG sing 321 n n 
C4 C5 NAG sing 322 n n 
C4 O4 NAG sing 323 n n 
C4 H4 NAG sing 324 n n 
C5 C6 NAG sing 325 n n 
C5 O5 NAG sing 326 n n 
C5 H5 NAG sing 327 n n 
C6 O6 NAG sing 328 n n 
C6 H61 NAG sing 329 n n 
C6 H62 NAG sing 330 n n 
C7 C8 NAG sing 331 n n 
C7 N2 NAG sing 332 n n 
C7 O7 NAG doub 333 n n 
C8 H81 NAG sing 334 n n 
C8 H82 NAG sing 335 n n 
C8 H83 NAG sing 336 n n 
N2 HN2 NAG sing 337 n n 
O1 HO1 NAG sing 338 n n 
O3 HO3 NAG sing 339 n n 
O4 HO4 NAG sing 340 n n 
O6 HO6 NAG sing 341 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6V35 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PGW A 1 3001 3001 PGW PGW . 
J 3 PGW A 1 3002 3003 PGW PGW . 
K 3 PGW A 1 3003 3004 PGW PGW . 
L 3 PGW A 1 3004 3006 PGW PGW . 
M 3 PGW A 1 3005 3008 PGW PGW . 
N 4 CLR A 1 3006 4004 CLR CLR . 
O 3 PGW A 1 3007 3002 PGW PGW . 
P 3 PGW A 1 3008 3005 PGW PGW . 
Q 3 PGW A 1 3009 3008 PGW PGW . 
R 3 PGW E 1 2301 3009 PGW PGW . 
S 3 PGW E 1 2302 3010 PGW PGW . 
T 5 NAG E 1 2303 4001 NAG NAG . 
U 5 NAG E 1 2304 4002 NAG NAG . 
V 4 CLR E 1 2305 4003 CLR CLR . 
W 3 PGW B 1 1101 3002 PGW PGW . 
X 3 PGW B 1 1102 3005 PGW PGW . 
Y 3 PGW B 1 1103 3007 PGW PGW . 
Z 3 PGW B 1 1104 3001 PGW PGW . 
AA 3 PGW B 1 1105 3002 PGW PGW . 
BA 3 PGW B 1 1106 3003 PGW PGW . 
CA 3 PGW B 1 1107 3004 PGW PGW . 
DA 3 PGW B 1 1108 3006 PGW PGW . 
EA 3 PGW B 1 1109 3008 PGW PGW . 
FA 4 CLR B 1 1110 4004 CLR CLR . 
GA 3 PGW F 1 2301 3007 PGW PGW . 
HA 3 PGW F 1 2302 3009 PGW PGW . 
IA 3 PGW F 1 2303 3010 PGW PGW . 
JA 5 NAG F 1 2304 4001 NAG NAG . 
KA 5 NAG F 1 2305 4002 NAG NAG . 
LA 4 CLR F 1 2306 4003 CLR CLR . 
MA 3 PGW C 1 1101 3005 PGW PGW . 
NA 3 PGW C 1 1102 3001 PGW PGW . 
OA 3 PGW C 1 1103 3003 PGW PGW . 
PA 3 PGW C 1 1104 3004 PGW PGW . 
QA 3 PGW C 1 1105 3006 PGW PGW . 
RA 3 PGW C 1 1106 3008 PGW PGW . 
SA 4 CLR C 1 1107 4004 CLR CLR . 
TA 3 PGW G 1 2301 3009 PGW PGW . 
UA 3 PGW G 1 2302 3010 PGW PGW . 
VA 5 NAG G 1 2303 4001 NAG NAG . 
WA 5 NAG G 1 2304 4002 NAG NAG . 
XA 4 CLR G 1 2305 4003 CLR CLR . 
YA 3 PGW D 1 1101 3002 PGW PGW . 
ZA 3 PGW D 1 1102 3005 PGW PGW . 
AB 3 PGW D 1 1103 3007 PGW PGW . 
BB 3 PGW D 1 1104 3001 PGW PGW . 
CB 3 PGW D 1 1105 3003 PGW PGW . 
DB 3 PGW D 1 1106 3004 PGW PGW . 
EB 3 PGW D 1 1107 3006 PGW PGW . 
FB 4 CLR D 1 1108 4004 CLR CLR . 
GB 3 PGW H 1 2301 3007 PGW PGW . 
HB 3 PGW H 1 2302 3009 PGW PGW . 
IB 3 PGW H 1 2303 3010 PGW PGW . 
JB 5 NAG H 1 2304 4001 NAG NAG . 
KB 5 NAG H 1 2305 4002 NAG NAG . 
LB 4 CLR H 1 2306 4003 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . VA 5 197.333 199.602 222.884 1 184.12 ? C1 NAG 2303 G 1 
HETATM 2 C C2 NAG . . . VA 5 198.125 199.666 221.565 1 184.12 ? C2 NAG 2303 G 1 
HETATM 3 C C3 NAG . . . VA 5 197.393 200.268 220.363 1 184.12 ? C3 NAG 2303 G 1 
HETATM 4 C C4 NAG . . . VA 5 196.107 201.032 220.677 1 184.12 ? C4 NAG 2303 G 1 
HETATM 5 C C5 NAG . . . VA 5 196.076 201.594 222.096 1 184.12 ? C5 NAG 2303 G 1 
HETATM 6 C C6 NAG . . . VA 5 194.706 202.197 222.372 1 184.12 ? C6 NAG 2303 G 1 
HETATM 7 C C7 NAG . . . VA 5 200.48 200.151 221.169 1 184.12 ? C7 NAG 2303 G 1 
HETATM 8 C C8 NAG . . . VA 5 201.654 201.024 221.503 1 184.12 ? C8 NAG 2303 G 1 
HETATM 9 N N2 NAG . . . VA 5 199.338 200.429 221.793 1 184.12 ? N2 NAG 2303 G 1 
HETATM 10 O O3 NAG . . . VA 5 197.093 199.226 219.462 1 184.12 ? O3 NAG 2303 G 1 
HETATM 11 O O4 NAG . . . VA 5 195.948 202.082 219.749 1 184.12 ? O4 NAG 2303 G 1 
HETATM 12 O O5 NAG . . . VA 5 196.308 200.587 223.068 1 184.12 ? O5 NAG 2303 G 1 
HETATM 13 O O6 NAG . . . VA 5 193.729 201.183 222.276 1 184.12 ? O6 NAG 2303 G 1 
HETATM 14 O O7 NAG . . . VA 5 200.597 199.235 220.355 1 184.12 ? O7 NAG 2303 G 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    119 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#