data_6V35
#
_model_server_result.job_id            JMCyOPxnNm9OdA5tyE1L4g 
_model_server_result.datetime_utc      '2024-11-29 23:08:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":2305}' 
#
_entry.id    6V35 
#
_exptl.entry_id    6V35 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              386.654 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CHOLESTEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6V35 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 V N N 
? 4 FA N N 
? 4 LA N N 
? 4 SA N N 
? 4 XA N N 
? 4 FB N N 
? 4 LB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 54 E CYS 2054 1_555 B SG CYS 148 E CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 68 E CYS 2068 1_555 B SG CYS 119 E CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 72 E CYS 2072 1_555 B SG CYS 76 E CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 B SG CYS 84 E CYS 2084 1_555 B SG CYS 113 E CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 54 F CYS 2054 1_555 D SG CYS 148 F CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 D SG CYS 68 F CYS 2068 1_555 D SG CYS 119 F CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 72 F CYS 2072 1_555 D SG CYS 76 F CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 D SG CYS 84 F CYS 2084 1_555 D SG CYS 113 F CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 F SG CYS 54 G CYS 2054 1_555 F SG CYS 148 G CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 F SG CYS 68 G CYS 2068 1_555 F SG CYS 119 G CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 F SG CYS 72 G CYS 2072 1_555 F SG CYS 76 G CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf12 F SG CYS 84 G CYS 2084 1_555 F SG CYS 113 G CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 H SG CYS 54 H CYS 2054 1_555 H SG CYS 148 H CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 H SG CYS 68 H CYS 2068 1_555 H SG CYS 119 H CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 H SG CYS 72 H CYS 2072 1_555 H SG CYS 76 H CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf16 H SG CYS 84 H CYS 2084 1_555 H SG CYS 113 H CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 B ND2 ASN 53 E ASN 2053 1_555 T C1 NAG . E NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale2 B ND2 ASN 90 E ASN 2090 1_555 U C1 NAG . E NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale3 D ND2 ASN 53 F ASN 2053 1_555 JA C1 NAG . F NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale4 D ND2 ASN 90 F ASN 2090 1_555 KA C1 NAG . F NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 F ND2 ASN 53 G ASN 2053 1_555 VA C1 NAG . G NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale6 F ND2 ASN 90 G ASN 2090 1_555 WA C1 NAG . G NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 H ND2 ASN 53 H ASN 2053 1_555 JB C1 NAG . H NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale8 H ND2 ASN 90 H ASN 2090 1_555 KB C1 NAG . H NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C27 H46 O' 
_chem_comp.formula_weight    386.654 
_chem_comp.id                CLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CHOLESTEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CLR sing 70 n n 
C1 C10 CLR sing 71 n n 
C1 H11 CLR sing 72 n n 
C1 H12 CLR sing 73 n n 
C2 C3 CLR sing 74 n n 
C2 H21 CLR sing 75 n n 
C2 H22 CLR sing 76 n n 
C3 C4 CLR sing 77 n n 
C3 O1 CLR sing 78 n n 
C3 H3 CLR sing 79 n n 
C4 C5 CLR sing 80 n n 
C4 H41 CLR sing 81 n n 
C4 H42 CLR sing 82 n n 
C5 C6 CLR doub 83 n n 
C5 C10 CLR sing 84 n n 
C6 C7 CLR sing 85 n n 
C6 H6 CLR sing 86 n n 
C7 C8 CLR sing 87 n n 
C7 H71 CLR sing 88 n n 
C7 H72 CLR sing 89 n n 
C8 C9 CLR sing 90 n n 
C8 C14 CLR sing 91 n n 
C8 H8 CLR sing 92 n n 
C9 C10 CLR sing 93 n n 
C9 C11 CLR sing 94 n n 
C9 H9 CLR sing 95 n n 
C10 C19 CLR sing 96 n n 
C11 C12 CLR sing 97 n n 
C11 H111 CLR sing 98 n n 
C11 H112 CLR sing 99 n n 
C12 C13 CLR sing 100 n n 
C12 H121 CLR sing 101 n n 
C12 H122 CLR sing 102 n n 
C13 C14 CLR sing 103 n n 
C13 C17 CLR sing 104 n n 
C13 C18 CLR sing 105 n n 
C14 C15 CLR sing 106 n n 
C14 H14 CLR sing 107 n n 
C15 C16 CLR sing 108 n n 
C15 H151 CLR sing 109 n n 
C15 H152 CLR sing 110 n n 
C16 C17 CLR sing 111 n n 
C16 H161 CLR sing 112 n n 
C16 H162 CLR sing 113 n n 
C17 C20 CLR sing 114 n n 
C17 H17 CLR sing 115 n n 
C18 H181 CLR sing 116 n n 
C18 H182 CLR sing 117 n n 
C18 H183 CLR sing 118 n n 
C19 H191 CLR sing 119 n n 
C19 H192 CLR sing 120 n n 
C19 H193 CLR sing 121 n n 
C20 C21 CLR sing 122 n n 
C20 C22 CLR sing 123 n n 
C20 H20 CLR sing 124 n n 
C21 H211 CLR sing 125 n n 
C21 H212 CLR sing 126 n n 
C21 H213 CLR sing 127 n n 
C22 C23 CLR sing 128 n n 
C22 H221 CLR sing 129 n n 
C22 H222 CLR sing 130 n n 
C23 C24 CLR sing 131 n n 
C23 H231 CLR sing 132 n n 
C23 H232 CLR sing 133 n n 
C24 C25 CLR sing 134 n n 
C24 H241 CLR sing 135 n n 
C24 H242 CLR sing 136 n n 
C25 C26 CLR sing 137 n n 
C25 C27 CLR sing 138 n n 
C25 H25 CLR sing 139 n n 
C26 H261 CLR sing 140 n n 
C26 H262 CLR sing 141 n n 
C26 H263 CLR sing 142 n n 
C27 H271 CLR sing 143 n n 
C27 H272 CLR sing 144 n n 
C27 H273 CLR sing 145 n n 
O1 H1 CLR sing 146 n n 
#
_atom_sites.entry_id                     6V35 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PGW A 1 3001 3001 PGW PGW . 
J 3 PGW A 1 3002 3003 PGW PGW . 
K 3 PGW A 1 3003 3004 PGW PGW . 
L 3 PGW A 1 3004 3006 PGW PGW . 
M 3 PGW A 1 3005 3008 PGW PGW . 
N 4 CLR A 1 3006 4004 CLR CLR . 
O 3 PGW A 1 3007 3002 PGW PGW . 
P 3 PGW A 1 3008 3005 PGW PGW . 
Q 3 PGW A 1 3009 3008 PGW PGW . 
R 3 PGW E 1 2301 3009 PGW PGW . 
S 3 PGW E 1 2302 3010 PGW PGW . 
T 5 NAG E 1 2303 4001 NAG NAG . 
U 5 NAG E 1 2304 4002 NAG NAG . 
V 4 CLR E 1 2305 4003 CLR CLR . 
W 3 PGW B 1 1101 3002 PGW PGW . 
X 3 PGW B 1 1102 3005 PGW PGW . 
Y 3 PGW B 1 1103 3007 PGW PGW . 
Z 3 PGW B 1 1104 3001 PGW PGW . 
AA 3 PGW B 1 1105 3002 PGW PGW . 
BA 3 PGW B 1 1106 3003 PGW PGW . 
CA 3 PGW B 1 1107 3004 PGW PGW . 
DA 3 PGW B 1 1108 3006 PGW PGW . 
EA 3 PGW B 1 1109 3008 PGW PGW . 
FA 4 CLR B 1 1110 4004 CLR CLR . 
GA 3 PGW F 1 2301 3007 PGW PGW . 
HA 3 PGW F 1 2302 3009 PGW PGW . 
IA 3 PGW F 1 2303 3010 PGW PGW . 
JA 5 NAG F 1 2304 4001 NAG NAG . 
KA 5 NAG F 1 2305 4002 NAG NAG . 
LA 4 CLR F 1 2306 4003 CLR CLR . 
MA 3 PGW C 1 1101 3005 PGW PGW . 
NA 3 PGW C 1 1102 3001 PGW PGW . 
OA 3 PGW C 1 1103 3003 PGW PGW . 
PA 3 PGW C 1 1104 3004 PGW PGW . 
QA 3 PGW C 1 1105 3006 PGW PGW . 
RA 3 PGW C 1 1106 3008 PGW PGW . 
SA 4 CLR C 1 1107 4004 CLR CLR . 
TA 3 PGW G 1 2301 3009 PGW PGW . 
UA 3 PGW G 1 2302 3010 PGW PGW . 
VA 5 NAG G 1 2303 4001 NAG NAG . 
WA 5 NAG G 1 2304 4002 NAG NAG . 
XA 4 CLR G 1 2305 4003 CLR CLR . 
YA 3 PGW D 1 1101 3002 PGW PGW . 
ZA 3 PGW D 1 1102 3005 PGW PGW . 
AB 3 PGW D 1 1103 3007 PGW PGW . 
BB 3 PGW D 1 1104 3001 PGW PGW . 
CB 3 PGW D 1 1105 3003 PGW PGW . 
DB 3 PGW D 1 1106 3004 PGW PGW . 
EB 3 PGW D 1 1107 3006 PGW PGW . 
FB 4 CLR D 1 1108 4004 CLR CLR . 
GB 3 PGW H 1 2301 3007 PGW PGW . 
HB 3 PGW H 1 2302 3009 PGW PGW . 
IB 3 PGW H 1 2303 3010 PGW PGW . 
JB 5 NAG H 1 2304 4001 NAG NAG . 
KB 5 NAG H 1 2305 4002 NAG NAG . 
LB 4 CLR H 1 2306 4003 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CLR . . . XA 4 205.028 178.013 200.004 1 136.48 ? C1 CLR 2305 G 1 
HETATM 2 C C2 CLR . . . XA 4 205.103 177.998 201.558 1 136.48 ? C2 CLR 2305 G 1 
HETATM 3 C C3 CLR . . . XA 4 204.063 178.861 202.303 1 136.48 ? C3 CLR 2305 G 1 
HETATM 4 C C4 CLR . . . XA 4 203.214 179.747 201.366 1 136.48 ? C4 CLR 2305 G 1 
HETATM 5 C C5 CLR . . . XA 4 202.565 178.851 200.273 1 136.48 ? C5 CLR 2305 G 1 
HETATM 6 C C6 CLR . . . XA 4 201.417 179.659 199.56 1 136.48 ? C6 CLR 2305 G 1 
HETATM 7 C C7 CLR . . . XA 4 201.745 180.23 198.091 1 136.48 ? C7 CLR 2305 G 1 
HETATM 8 C C8 CLR . . . XA 4 202.411 179.158 197.179 1 136.48 ? C8 CLR 2305 G 1 
HETATM 9 C C9 CLR . . . XA 4 203.844 178.809 197.959 1 136.48 ? C9 CLR 2305 G 1 
HETATM 10 C C10 CLR . . . XA 4 203.613 178.152 199.364 1 136.48 ? C10 CLR 2305 G 1 
HETATM 11 C C11 CLR . . . XA 4 204.732 177.95 197.095 1 136.48 ? C11 CLR 2305 G 1 
HETATM 12 C C12 CLR . . . XA 4 204.768 178.364 195.485 1 136.48 ? C12 CLR 2305 G 1 
HETATM 13 C C13 CLR . . . XA 4 203.423 178.629 194.851 1 136.48 ? C13 CLR 2305 G 1 
HETATM 14 C C14 CLR . . . XA 4 202.559 179.619 195.78 1 136.48 ? C14 CLR 2305 G 1 
HETATM 15 C C15 CLR . . . XA 4 201.244 180.006 194.914 1 136.48 ? C15 CLR 2305 G 1 
HETATM 16 C C16 CLR . . . XA 4 201.542 179.661 193.4 1 136.48 ? C16 CLR 2305 G 1 
HETATM 17 C C17 CLR . . . XA 4 203.219 179.201 193.332 1 136.48 ? C17 CLR 2305 G 1 
HETATM 18 C C18 CLR . . . XA 4 202.605 177.302 194.848 1 136.48 ? C18 CLR 2305 G 1 
HETATM 19 C C19 CLR . . . XA 4 203.071 176.758 199.152 1 136.48 ? C19 CLR 2305 G 1 
HETATM 20 C C20 CLR . . . XA 4 203.458 178.33 192.3 1 136.48 ? C20 CLR 2305 G 1 
HETATM 21 C C21 CLR . . . XA 4 204.999 178.261 191.882 1 136.48 ? C21 CLR 2305 G 1 
HETATM 22 C C22 CLR . . . XA 4 202.703 178.794 190.95 1 136.48 ? C22 CLR 2305 G 1 
HETATM 23 C C23 CLR . . . XA 4 201.894 177.628 190.303 1 136.48 ? C23 CLR 2305 G 1 
HETATM 24 C C24 CLR . . . XA 4 200.428 178.075 190.063 1 136.48 ? C24 CLR 2305 G 1 
HETATM 25 C C25 CLR . . . XA 4 200.134 178.23 188.529 1 136.48 ? C25 CLR 2305 G 1 
HETATM 26 C C26 CLR . . . XA 4 198.74 177.824 188.182 1 136.48 ? C26 CLR 2305 G 1 
HETATM 27 C C27 CLR . . . XA 4 200.496 179.679 187.983 1 136.48 ? C27 CLR 2305 G 1 
HETATM 28 O O1 CLR . . . XA 4 203.212 177.995 203.018 1 136.48 ? O1 CLR 2305 G 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#