data_6V35 # _model_server_result.job_id dekqPqdhfr2eRFugXgOOhQ _model_server_result.datetime_utc '2024-11-26 13:38:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":3006}' # _entry.id 6V35 # _exptl.entry_id 6V35 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V35 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 V N N ? 4 FA N N ? 4 LA N N ? 4 SA N N ? 4 XA N N ? 4 FB N N ? 4 LB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 54 E CYS 2054 1_555 B SG CYS 148 E CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 68 E CYS 2068 1_555 B SG CYS 119 E CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 72 E CYS 2072 1_555 B SG CYS 76 E CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 84 E CYS 2084 1_555 B SG CYS 113 E CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 D SG CYS 54 F CYS 2054 1_555 D SG CYS 148 F CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 D SG CYS 68 F CYS 2068 1_555 D SG CYS 119 F CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 D SG CYS 72 F CYS 2072 1_555 D SG CYS 76 F CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 D SG CYS 84 F CYS 2084 1_555 D SG CYS 113 F CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 F SG CYS 54 G CYS 2054 1_555 F SG CYS 148 G CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 F SG CYS 68 G CYS 2068 1_555 F SG CYS 119 G CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 F SG CYS 72 G CYS 2072 1_555 F SG CYS 76 G CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 F SG CYS 84 G CYS 2084 1_555 F SG CYS 113 G CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 H SG CYS 54 H CYS 2054 1_555 H SG CYS 148 H CYS 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf14 H SG CYS 68 H CYS 2068 1_555 H SG CYS 119 H CYS 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 H SG CYS 72 H CYS 2072 1_555 H SG CYS 76 H CYS 2076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 H SG CYS 84 H CYS 2084 1_555 H SG CYS 113 H CYS 2113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 53 E ASN 2053 1_555 T C1 NAG . E NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale2 B ND2 ASN 90 E ASN 2090 1_555 U C1 NAG . E NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 D ND2 ASN 53 F ASN 2053 1_555 JA C1 NAG . F NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 D ND2 ASN 90 F ASN 2090 1_555 KA C1 NAG . F NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 F ND2 ASN 53 G ASN 2053 1_555 VA C1 NAG . G NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale6 F ND2 ASN 90 G ASN 2090 1_555 WA C1 NAG . G NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale7 H ND2 ASN 53 H ASN 2053 1_555 JB C1 NAG . H NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale8 H ND2 ASN 90 H ASN 2090 1_555 KB C1 NAG . H NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6V35 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PGW A 1 3001 3001 PGW PGW . J 3 PGW A 1 3002 3003 PGW PGW . K 3 PGW A 1 3003 3004 PGW PGW . L 3 PGW A 1 3004 3006 PGW PGW . M 3 PGW A 1 3005 3008 PGW PGW . N 4 CLR A 1 3006 4004 CLR CLR . O 3 PGW A 1 3007 3002 PGW PGW . P 3 PGW A 1 3008 3005 PGW PGW . Q 3 PGW A 1 3009 3008 PGW PGW . R 3 PGW E 1 2301 3009 PGW PGW . S 3 PGW E 1 2302 3010 PGW PGW . T 5 NAG E 1 2303 4001 NAG NAG . U 5 NAG E 1 2304 4002 NAG NAG . V 4 CLR E 1 2305 4003 CLR CLR . W 3 PGW B 1 1101 3002 PGW PGW . X 3 PGW B 1 1102 3005 PGW PGW . Y 3 PGW B 1 1103 3007 PGW PGW . Z 3 PGW B 1 1104 3001 PGW PGW . AA 3 PGW B 1 1105 3002 PGW PGW . BA 3 PGW B 1 1106 3003 PGW PGW . CA 3 PGW B 1 1107 3004 PGW PGW . DA 3 PGW B 1 1108 3006 PGW PGW . EA 3 PGW B 1 1109 3008 PGW PGW . FA 4 CLR B 1 1110 4004 CLR CLR . GA 3 PGW F 1 2301 3007 PGW PGW . HA 3 PGW F 1 2302 3009 PGW PGW . IA 3 PGW F 1 2303 3010 PGW PGW . JA 5 NAG F 1 2304 4001 NAG NAG . KA 5 NAG F 1 2305 4002 NAG NAG . LA 4 CLR F 1 2306 4003 CLR CLR . MA 3 PGW C 1 1101 3005 PGW PGW . NA 3 PGW C 1 1102 3001 PGW PGW . OA 3 PGW C 1 1103 3003 PGW PGW . PA 3 PGW C 1 1104 3004 PGW PGW . QA 3 PGW C 1 1105 3006 PGW PGW . RA 3 PGW C 1 1106 3008 PGW PGW . SA 4 CLR C 1 1107 4004 CLR CLR . TA 3 PGW G 1 2301 3009 PGW PGW . UA 3 PGW G 1 2302 3010 PGW PGW . VA 5 NAG G 1 2303 4001 NAG NAG . WA 5 NAG G 1 2304 4002 NAG NAG . XA 4 CLR G 1 2305 4003 CLR CLR . YA 3 PGW D 1 1101 3002 PGW PGW . ZA 3 PGW D 1 1102 3005 PGW PGW . AB 3 PGW D 1 1103 3007 PGW PGW . BB 3 PGW D 1 1104 3001 PGW PGW . CB 3 PGW D 1 1105 3003 PGW PGW . DB 3 PGW D 1 1106 3004 PGW PGW . EB 3 PGW D 1 1107 3006 PGW PGW . FB 4 CLR D 1 1108 4004 CLR CLR . GB 3 PGW H 1 2301 3007 PGW PGW . HB 3 PGW H 1 2302 3009 PGW PGW . IB 3 PGW H 1 2303 3010 PGW PGW . JB 5 NAG H 1 2304 4001 NAG NAG . KB 5 NAG H 1 2305 4002 NAG NAG . LB 4 CLR H 1 2306 4003 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . N 4 121.908 160.106 198.878 1 147.27 ? C1 CLR 3006 A 1 HETATM 2 C C2 CLR . . . N 4 121.619 160.218 200.398 1 147.27 ? C2 CLR 3006 A 1 HETATM 3 C C3 CLR . . . N 4 120.824 161.484 200.776 1 147.27 ? C3 CLR 3006 A 1 HETATM 4 C C4 CLR . . . N 4 119.535 161.597 199.94 1 147.27 ? C4 CLR 3006 A 1 HETATM 5 C C5 CLR . . . N 4 119.846 161.591 198.416 1 147.27 ? C5 CLR 3006 A 1 HETATM 6 C C6 CLR . . . N 4 120.496 162.966 198.042 1 147.27 ? C6 CLR 3006 A 1 HETATM 7 C C7 CLR . . . N 4 120.91 163.089 196.487 1 147.27 ? C7 CLR 3006 A 1 HETATM 8 C C8 CLR . . . N 4 120.596 161.813 195.636 1 147.27 ? C8 CLR 3006 A 1 HETATM 9 C C9 CLR . . . N 4 121.277 160.541 196.497 1 147.27 ? C9 CLR 3006 A 1 HETATM 10 C C10 CLR . . . N 4 120.69 160.379 197.956 1 147.27 ? C10 CLR 3006 A 1 HETATM 11 C C11 CLR . . . N 4 121.281 159.279 195.659 1 147.27 ? C11 CLR 3006 A 1 HETATM 12 C C12 CLR . . . N 4 121.879 159.523 194.129 1 147.27 ? C12 CLR 3006 A 1 HETATM 13 C C13 CLR . . . N 4 121.18 160.621 193.365 1 147.27 ? C13 CLR 3006 A 1 HETATM 14 C C14 CLR . . . N 4 121.081 161.968 194.245 1 147.27 ? C14 CLR 3006 A 1 HETATM 15 C C15 CLR . . . N 4 120.391 163.044 193.25 1 147.27 ? C15 CLR 3006 A 1 HETATM 16 C C16 CLR . . . N 4 121.144 162.824 191.88 1 147.27 ? C16 CLR 3006 A 1 HETATM 17 C C17 CLR . . . N 4 121.703 161.169 191.9 1 147.27 ? C17 CLR 3006 A 1 HETATM 18 C C18 CLR . . . N 4 119.693 160.146 193.189 1 147.27 ? C18 CLR 3006 A 1 HETATM 19 C C19 CLR . . . N 4 119.764 159.178 198.052 1 147.27 ? C19 CLR 3006 A 1 HETATM 20 C C20 CLR . . . N 4 121.278 160.483 190.79 1 147.27 ? C20 CLR 3006 A 1 HETATM 21 C C21 CLR . . . N 4 122.139 159.162 190.53 1 147.27 ? C21 CLR 3006 A 1 HETATM 22 C C22 CLR . . . N 4 121.47 161.371 189.452 1 147.27 ? C22 CLR 3006 A 1 HETATM 23 C C23 CLR . . . N 4 120.191 161.493 188.563 1 147.27 ? C23 CLR 3006 A 1 HETATM 24 C C24 CLR . . . N 4 120.164 162.875 187.849 1 147.27 ? C24 CLR 3006 A 1 HETATM 25 C C25 CLR . . . N 4 119.953 162.781 186.29 1 147.27 ? C25 CLR 3006 A 1 HETATM 26 C C26 CLR . . . N 4 120.455 164.015 185.614 1 147.27 ? C26 CLR 3006 A 1 HETATM 27 C C27 CLR . . . N 4 120.627 161.48 185.671 1 147.27 ? C27 CLR 3006 A 1 HETATM 28 O O1 CLR . . . N 4 120.497 161.442 202.146 1 147.27 ? O1 CLR 3006 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 122 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #