data_6V3F # _model_server_result.job_id '_td_DhinhKU1_fmeJk3T8A' _model_server_result.datetime_utc '2024-11-21 13:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1419}' # _entry.id 6V3F # _exptl.entry_id 6V3F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V3F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1357 NAG 2 n B NAG 2 B 2 NAG A 1358 NAG 2 n C NAG 1 C 1 NAG A 1359 NAG 2 n C NAG 2 C 2 NAG A 1360 NAG 2 n D NAG 1 D 1 NAG A 1362 NAG 2 n D NAG 2 D 2 NAG A 1363 NAG 2 n E NAG 1 E 1 NAG A 1366 NAG 2 n E NAG 2 E 2 NAG A 1367 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 32 1_555 A SG CYS 70 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 18 A CYS 38 1_555 A SG CYS 36 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 57 A CYS 77 1_555 A SG CYS 105 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 71 A CYS 91 1_555 A SG CYS 109 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 93 A CYS 113 1_555 A SG CYS 234 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 96 A CYS 116 1_555 A SG CYS 152 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 169 A CYS 189 1_555 A SG CYS 177 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 A SG CYS 223 A CYS 243 1_555 A SG CYS 239 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 A SG CYS 236 A CYS 256 1_555 A SG CYS 243 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 A SG CYS 451 A CYS 471 1_555 A SG CYS 465 A CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 505 A CYS 525 1_555 A SG CYS 522 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 A SG CYS 947 A CYS 967 1_555 A SG CYS 1005 A CYS 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 A SG CYS 948 A CYS 968 1_555 A SG CYS 974 A CYS 994 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 33 A ASN 53 1_555 F C1 NAG . A NAG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 118 A ASN 138 1_555 G C1 NAG . A NAG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 224 A ASN 244 1_555 H C1 NAG . A NAG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 396 A ASN 416 1_555 I C1 NAG . A NAG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 A ND2 ASN 411 A ASN 431 1_555 J C1 NAG . A NAG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 444 A ASN 464 1_555 K C1 NAG . A NAG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 A ND2 ASN 477 A ASN 497 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 A ND2 ASN 486 A ASN 506 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale9 A ND2 ASN 586 A ASN 606 1_555 L C1 NAG . A NAG 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 A ND2 ASN 889 A ASN 909 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 A ND2 ASN 897 A ASN 917 1_555 M C1 NAG . A NAG 1414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale12 A ND2 ASN 976 A ASN 996 1_555 N C1 NAG . A NAG 1415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 A ND2 ASN 1018 A ASN 1038 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 A ND2 ASN 1056 A ASN 1076 1_555 O C1 NAG . A NAG 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale17 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale18 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6V3F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG A 1 1401 1351 NAG NAG . G 3 NAG A 1 1402 1352 NAG NAG . H 3 NAG A 1 1403 1353 NAG NAG . I 3 NAG A 1 1404 1354 NAG NAG . J 3 NAG A 1 1405 1355 NAG NAG . K 3 NAG A 1 1406 1356 NAG NAG . L 3 NAG A 1 1411 1361 NAG NAG . M 3 NAG A 1 1414 1364 NAG NAG . N 3 NAG A 1 1415 1365 NAG NAG . O 3 NAG A 1 1418 1368 NAG NAG . P 4 CLR A 1 1419 1401 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . P 4 127.862 109.602 140.648 1 53.86 ? C1 CLR 1419 A 1 HETATM 2 C C2 CLR . . . P 4 127.377 108.194 140.937 1 53.86 ? C2 CLR 1419 A 1 HETATM 3 C C3 CLR . . . P 4 127.367 107.418 139.635 1 53.86 ? C3 CLR 1419 A 1 HETATM 4 C C4 CLR . . . P 4 128.836 107.25 139.227 1 53.86 ? C4 CLR 1419 A 1 HETATM 5 C C5 CLR . . . P 4 129.433 108.606 138.995 1 53.86 ? C5 CLR 1419 A 1 HETATM 6 C C6 CLR . . . P 4 130.248 108.77 137.968 1 53.86 ? C6 CLR 1419 A 1 HETATM 7 C C7 CLR . . . P 4 130.778 110.1 137.569 1 53.86 ? C7 CLR 1419 A 1 HETATM 8 C C8 CLR . . . P 4 130.953 111.011 138.785 1 53.86 ? C8 CLR 1419 A 1 HETATM 9 C C9 CLR . . . P 4 129.686 111.011 139.661 1 53.86 ? C9 CLR 1419 A 1 HETATM 10 C C10 CLR . . . P 4 129.323 109.586 140.128 1 53.86 ? C10 CLR 1419 A 1 HETATM 11 C C11 CLR . . . P 4 129.848 111.96 140.849 1 53.86 ? C11 CLR 1419 A 1 HETATM 12 C C12 CLR . . . P 4 130.101 113.376 140.381 1 53.86 ? C12 CLR 1419 A 1 HETATM 13 C C13 CLR . . . P 4 131.365 113.454 139.48 1 53.86 ? C13 CLR 1419 A 1 HETATM 14 C C14 CLR . . . P 4 131.154 112.453 138.299 1 53.86 ? C14 CLR 1419 A 1 HETATM 15 C C15 CLR . . . P 4 132.326 112.746 137.377 1 53.86 ? C15 CLR 1419 A 1 HETATM 16 C C16 CLR . . . P 4 132.462 114.282 137.473 1 53.86 ? C16 CLR 1419 A 1 HETATM 17 C C17 CLR . . . P 4 131.62 114.78 138.69 1 53.86 ? C17 CLR 1419 A 1 HETATM 18 C C18 CLR . . . P 4 132.644 113.092 140.249 1 53.86 ? C18 CLR 1419 A 1 HETATM 19 C C19 CLR . . . P 4 130.285 109.123 141.219 1 53.86 ? C19 CLR 1419 A 1 HETATM 20 C C20 CLR . . . P 4 132.378 115.956 139.445 1 53.86 ? C20 CLR 1419 A 1 HETATM 21 C C21 CLR . . . P 4 131.535 116.654 140.548 1 53.86 ? C21 CLR 1419 A 1 HETATM 22 C C22 CLR . . . P 4 133.002 116.979 138.414 1 53.86 ? C22 CLR 1419 A 1 HETATM 23 C C23 CLR . . . P 4 132.501 118.433 138.607 1 53.86 ? C23 CLR 1419 A 1 HETATM 24 C C24 CLR . . . P 4 133.037 119.358 137.521 1 53.86 ? C24 CLR 1419 A 1 HETATM 25 C C25 CLR . . . P 4 132.925 120.833 137.949 1 53.86 ? C25 CLR 1419 A 1 HETATM 26 C C26 CLR . . . P 4 133.319 121.732 136.799 1 53.86 ? C26 CLR 1419 A 1 HETATM 27 C C27 CLR . . . P 4 131.52 121.177 138.396 1 53.86 ? C27 CLR 1419 A 1 HETATM 28 O O1 CLR . . . P 4 126.785 106.187 139.906 1 53.86 ? O1 CLR 1419 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 433 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #