data_6V3O
#
_model_server_result.job_id            OeHUubvI8jGAkAW9ZoJykw 
_model_server_result.datetime_utc      '2025-08-31 08:51:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v3o 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":1001}' 
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_entry.id    6V3O 
#
_exptl.entry_id    6V3O 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.05 
_cell.angle_gamma         90 
_cell.entry_id            6V3O 
_cell.length_a            140.692 
_cell.length_b            217.976 
_cell.length_c            173.569 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6V3O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,NA,OA 1 1 
E,F,G,H,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,PA,QA,RA 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 FA N N 
? 5 JA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 146 n n 
C1 C2 GOL sing 147 n n 
C1 H11 GOL sing 148 n n 
C1 H12 GOL sing 149 n n 
O1 HO1 GOL sing 150 n n 
C2 O2 GOL sing 151 n n 
C2 C3 GOL sing 152 n n 
C2 H2 GOL sing 153 n n 
O2 HO2 GOL sing 154 n n 
C3 O3 GOL sing 155 n n 
C3 H31 GOL sing 156 n n 
C3 H32 GOL sing 157 n n 
O3 HO3 GOL sing 158 n n 
#
_atom_sites.entry_id                     6V3O 
_atom_sites.fract_transf_matrix[1][1]    0.007108 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00013 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004588 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005762 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 SO4 A 1 1001 5 SO4 SO4 . 
J 2 SO4 A 1 1002 8 SO4 SO4 . 
K 2 SO4 A 1 1003 17 SO4 SO4 . 
L 3 FLC A 1 1004 1001 FLC FLC . 
M 2 SO4 B 1 1001 15 SO4 SO4 . 
N 2 SO4 B 1 1002 19 SO4 SO4 . 
O 3 FLC B 1 1003 1002 FLC FLC . 
P 3 FLC B 1 1004 1103 FLC FLC . 
Q 2 SO4 C 1 1001 3 SO4 SO4 . 
R 2 SO4 C 1 1002 11 SO4 SO4 . 
S 3 FLC C 1 1003 1004 FLC FLC . 
T 4 PG0 D 1 1001 1001 PG0 PG0 . 
U 2 SO4 D 1 1002 1 SO4 SO4 . 
V 2 SO4 D 1 1003 9 SO4 SO4 . 
W 2 SO4 D 1 1004 10 SO4 SO4 . 
X 2 SO4 E 1 1001 6 SO4 SO4 . 
Y 2 SO4 E 1 1002 12 SO4 SO4 . 
Z 2 SO4 E 1 1003 18 SO4 SO4 . 
AA 3 FLC E 1 1004 1005 FLC FLC . 
BA 2 SO4 F 1 1001 20 SO4 SO4 . 
CA 2 SO4 F 1 1002 21 SO4 SO4 . 
DA 2 SO4 F 1 1003 25 SO4 SO4 . 
EA 3 FLC F 1 1004 1006 FLC FLC . 
FA 5 GOL G 1 1001 1001 GOL GOL . 
GA 2 SO4 G 1 1002 4 SO4 SO4 . 
HA 2 SO4 G 1 1003 7 SO4 SO4 . 
IA 2 SO4 G 1 1004 16 SO4 SO4 . 
JA 5 GOL H 1 1001 1001 GOL GOL . 
KA 2 SO4 H 1 1002 13 SO4 SO4 . 
LA 2 SO4 H 1 1003 23 SO4 SO4 . 
MA 2 SO4 H 1 1004 24 SO4 SO4 . 
NA 6 HOH A 1 1101 5 HOH HOH . 
OA 6 HOH C 1 1101 1 HOH HOH . 
PA 6 HOH F 1 1101 4 HOH HOH . 
QA 6 HOH G 1 1101 7 HOH HOH . 
QA 6 HOH G 2 1102 2 HOH HOH . 
RA 6 HOH H 1 1101 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . FA 5 -6.765 -101.442 20.553 1 64.78 ? C1 GOL 1001 G 1 
HETATM 2 O O1 GOL . . . FA 5 -7.504 -101.383 21.734 1 64.63 ? O1 GOL 1001 G 1 
HETATM 3 C C2 GOL . . . FA 5 -7.76 -101.324 19.373 1 63.1 ? C2 GOL 1001 G 1 
HETATM 4 O O2 GOL . . . FA 5 -7.588 -102.33 18.436 1 63.94 ? O2 GOL 1001 G 1 
HETATM 5 C C3 GOL . . . FA 5 -7.484 -99.945 18.758 1 64.38 ? C3 GOL 1001 G 1 
HETATM 6 O O3 GOL . . . FA 5 -8.122 -99.95 17.522 1 63.72 ? O3 GOL 1001 G 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    99 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#