data_6V3T # _model_server_result.job_id xbrv8PeKR1J67hl7qU2cJg _model_server_result.datetime_utc '2025-02-19 02:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6V3T # _exptl.entry_id 6V3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.05 _cell.angle_gamma 90 _cell.entry_id 6V3T _cell.length_a 76.14 _cell.length_b 131.66 _cell.length_c 178.361 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 B,H,M 2 1 C,I,N 3 1 D,J 4 1 E,K 5 1 F,L 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 40 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 173 A CYS 173 1_555 E SG CYS 173 E CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 181 A CYS 181 1_555 C SG CYS 181 C CYS 181 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? disulf ? disulf4 B SG CYS 34 B CYS 34 1_555 B SG CYS 40 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 173 B CYS 173 1_555 B SG CYS 173 B CYS 173 2_757 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? disulf ? disulf6 B SG CYS 181 B CYS 181 1_555 D SG CYS 181 D CYS 181 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? disulf ? disulf7 C SG CYS 34 C CYS 34 1_555 C SG CYS 40 C CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 C SG CYS 173 C CYS 173 1_555 F SG CYS 173 G CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf9 D SG CYS 34 D CYS 34 1_555 D SG CYS 40 D CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 D SG CYS 173 D CYS 173 1_555 D SG CYS 173 D CYS 173 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? disulf ? disulf11 E SG CYS 34 E CYS 34 1_555 E SG CYS 40 E CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 E SG CYS 181 E CYS 181 1_555 F SG CYS 181 G CYS 181 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? disulf ? disulf13 F SG CYS 34 G CYS 34 1_555 F SG CYS 40 G CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6V3T _atom_sites.fract_transf_matrix[1][1] 0.013134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ACO A 1 301 3 ACO ACO . H 2 ACO B 1 301 6 ACO ACO . I 2 ACO C 1 301 4 ACO ACO . J 2 ACO D 1 301 5 ACO ACO . K 2 ACO E 1 301 1 ACO ACO . L 2 ACO G 1 301 2 ACO ACO . M 3 HOH B 1 401 2 HOH HOH . N 3 HOH C 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . J 2 103.097 -29.356 180.076 1 62.56 ? N1A ACO 301 D 1 HETATM 2 C C2A ACO . . . J 2 104.428 -29.152 180.052 1 66.4 ? C2A ACO 301 D 1 HETATM 3 N N3A ACO . . . J 2 104.964 -27.916 179.983 1 67.15 ? N3A ACO 301 D 1 HETATM 4 C C4A ACO . . . J 2 104.171 -26.821 179.93 1 65.82 ? C4A ACO 301 D 1 HETATM 5 C C5A ACO . . . J 2 102.718 -26.963 179.945 1 64.25 ? C5A ACO 301 D 1 HETATM 6 C C6A ACO . . . J 2 102.221 -28.338 180.025 1 62.4 ? C6A ACO 301 D 1 HETATM 7 N N6A ACO . . . J 2 100.904 -28.565 180.043 1 66.54 ? N6A ACO 301 D 1 HETATM 8 N N7A ACO . . . J 2 102.176 -25.728 179.876 1 64.93 ? N7A ACO 301 D 1 HETATM 9 C C8A ACO . . . J 2 103.225 -24.858 179.824 1 68.01 ? C8A ACO 301 D 1 HETATM 10 N N9A ACO . . . J 2 104.404 -25.53 179.844 1 67.34 ? N9A ACO 301 D 1 HETATM 11 C C1B ACO . . . J 2 105.761 -24.976 179.826 1 68.16 ? C1B ACO 301 D 1 HETATM 12 C C2B ACO . . . J 2 106.298 -24.69 178.442 1 71.18 ? C2B ACO 301 D 1 HETATM 13 O O2B ACO . . . J 2 107.046 -25.802 177.927 1 67.58 ? O2B ACO 301 D 1 HETATM 14 C C3B ACO . . . J 2 107.184 -23.497 178.714 1 73.41 ? C3B ACO 301 D 1 HETATM 15 O O3B ACO . . . J 2 108.465 -23.96 179.108 1 83.79 ? O3B ACO 301 D 1 HETATM 16 P P3B ACO . . . J 2 109.785 -23.806 178.218 1 93.06 ? P3B ACO 301 D 1 HETATM 17 O O7A ACO . . . J 2 109.228 -23.587 176.828 1 84.1 ? O7A ACO 301 D 1 HETATM 18 O O8A ACO . . . J 2 110.494 -22.622 178.866 1 79.96 ? O8A ACO 301 D 1 HETATM 19 O O9A ACO . . . J 2 110.449 -25.158 178.414 1 82.4 ? O9A ACO 301 D 1 HETATM 20 C C4B ACO . . . J 2 106.591 -22.813 179.925 1 67.55 ? C4B ACO 301 D 1 HETATM 21 O O4B ACO . . . J 2 105.717 -23.744 180.522 1 67.38 ? O4B ACO 301 D 1 HETATM 22 C C5B ACO . . . J 2 105.789 -21.591 179.584 1 63.52 ? C5B ACO 301 D 1 HETATM 23 O O5B ACO . . . J 2 104.557 -21.952 178.984 1 61.04 ? O5B ACO 301 D 1 HETATM 24 P P1A ACO . . . J 2 103.63 -20.702 178.601 1 63.94 ? P1A ACO 301 D 1 HETATM 25 O O1A ACO . . . J 2 104.597 -19.561 178.317 1 63.06 ? O1A ACO 301 D 1 HETATM 26 O O2A ACO . . . J 2 102.554 -21.044 177.619 1 70.3 ? O2A ACO 301 D 1 HETATM 27 O O3A ACO . . . J 2 102.836 -20.478 179.971 1 66.06 ? O3A ACO 301 D 1 HETATM 28 P P2A ACO . . . J 2 101.269 -20.773 180.169 1 67.66 ? P2A ACO 301 D 1 HETATM 29 O O4A ACO . . . J 2 100.532 -19.603 179.545 1 62.78 ? O4A ACO 301 D 1 HETATM 30 O O5A ACO . . . J 2 100.967 -22.169 179.65 1 72.98 ? O5A ACO 301 D 1 HETATM 31 O O6A ACO . . . J 2 101.248 -20.877 181.83 1 68.34 ? O6A ACO 301 D 1 HETATM 32 C CBP ACO . . . J 2 100.054 -21.261 184.064 1 67.53 ? CBP ACO 301 D 1 HETATM 33 C CCP ACO . . . J 2 100.241 -20.411 182.774 1 69.99 ? CCP ACO 301 D 1 HETATM 34 C CDP ACO . . . J 2 101.442 -21.475 184.657 1 60.19 ? CDP ACO 301 D 1 HETATM 35 C CEP ACO . . . J 2 99.384 -22.603 183.747 1 64.12 ? CEP ACO 301 D 1 HETATM 36 C CAP ACO . . . J 2 99.115 -20.508 185.077 1 74.84 ? CAP ACO 301 D 1 HETATM 37 O OAP ACO . . . J 2 97.89 -20.135 184.376 1 66.2 ? OAP ACO 301 D 1 HETATM 38 C C9P ACO . . . J 2 98.639 -21.224 186.382 1 77.1 ? C9P ACO 301 D 1 HETATM 39 O O9P ACO . . . J 2 97.589 -21.84 186.235 1 70.77 ? O9P ACO 301 D 1 HETATM 40 N N8P ACO . . . J 2 99.245 -21.234 187.648 1 69.34 ? N8P ACO 301 D 1 HETATM 41 C C7P ACO . . . J 2 100.604 -20.799 188.08 1 67.1 ? C7P ACO 301 D 1 HETATM 42 C C6P ACO . . . J 2 100.868 -19.388 188.668 1 67.39 ? C6P ACO 301 D 1 HETATM 43 C C5P ACO . . . J 2 101.982 -19.296 189.751 1 68.13 ? C5P ACO 301 D 1 HETATM 44 O O5P ACO . . . J 2 102.84 -20.139 189.903 1 58.68 ? O5P ACO 301 D 1 HETATM 45 N N4P ACO . . . J 2 101.964 -18.26 190.587 1 76.62 ? N4P ACO 301 D 1 HETATM 46 C C3P ACO . . . J 2 102.784 -18.242 191.808 1 95.56 ? C3P ACO 301 D 1 HETATM 47 C C2P ACO . . . J 2 102.039 -17.811 193.117 1 103.64 ? C2P ACO 301 D 1 HETATM 48 S S1P ACO . . . J 2 101.633 -19.111 194.291 1 109.29 ? S1P ACO 301 D 1 HETATM 49 C C ACO . . . J 2 100.225 -18.582 195.085 1 112.43 ? C ACO 301 D 1 HETATM 50 O O ACO . . . J 2 100.028 -17.378 195.221 1 118.28 ? O ACO 301 D 1 HETATM 51 C CH3 ACO . . . J 2 99.212 -19.567 195.631 1 102.85 ? CH3 ACO 301 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 51 #