data_6V3W # _model_server_result.job_id ACNH7N_HSBxUF70zXKeRiQ _model_server_result.datetime_utc '2024-11-22 21:35:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6V3W # _exptl.entry_id 6V3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{[(2S)-1-(3-oxo-3-{4-[5-(trifluoromethyl)pyrimidin-2-yl]piperazin-1-yl}propoxy)propan-2-yl]amino}-4-(trifluoromethyl)pyridazin-3(2H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6V3W _cell.length_a 80.466 _cell.length_b 80.466 _cell.length_c 142.648 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -40.233 69.6856 -23.774667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 98 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 584 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 98 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 584 _struct_conn.ptnr2_symmetry 12_564 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.022 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H23 F6 N7 O3' _chem_comp.formula_weight 523.432 _chem_comp.id QO4 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{[(2S)-1-(3-oxo-3-{4-[5-(trifluoromethyl)pyrimidin-2-yl]piperazin-1-yl}propoxy)propan-2-yl]amino}-4-(trifluoromethyl)pyridazin-3(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RBN-2397 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O29 C28 QO4 doub 277 n n F36 C33 QO4 sing 278 n n N30 C28 QO4 sing 279 n n N30 N31 QO4 sing 280 n n C28 C27 QO4 sing 281 n n N31 C32 QO4 doub 282 n n C27 C33 QO4 sing 283 n n C27 C26 QO4 doub 284 n n C33 F35 QO4 sing 285 n n C33 F34 QO4 sing 286 n n C32 C26 QO4 sing 287 n n C26 N25 QO4 sing 288 n n N25 C2 QO4 sing 289 n n C1 C2 QO4 sing 290 n n C2 C3 QO4 sing 291 n n C3 O4 QO4 sing 292 n n O4 C5 QO4 sing 293 n n F22 C21 QO4 sing 294 n n C19 N20 QO4 doub 295 n y C19 C18 QO4 sing 296 n y N20 C15 QO4 sing 297 n y C10 N9 QO4 sing 298 n n C10 C11 QO4 sing 299 n n C6 C5 QO4 sing 300 n n C6 C7 QO4 sing 301 n n N9 C7 QO4 sing 302 n n N9 C14 QO4 sing 303 n n C11 N12 QO4 sing 304 n n C7 O8 QO4 doub 305 n n C14 C13 QO4 sing 306 n n C18 C21 QO4 sing 307 n n C18 C17 QO4 doub 308 n y C15 N12 QO4 sing 309 n n C15 N16 QO4 doub 310 n y C21 F24 QO4 sing 311 n n C21 F23 QO4 sing 312 n n N12 C13 QO4 sing 313 n n N16 C17 QO4 sing 314 n y C5 H1 QO4 sing 315 n n C5 H2 QO4 sing 316 n n C6 H3 QO4 sing 317 n n C6 H4 QO4 sing 318 n n C10 H5 QO4 sing 319 n n C10 H6 QO4 sing 320 n n C13 H7 QO4 sing 321 n n C13 H8 QO4 sing 322 n n C17 H9 QO4 sing 323 n n C1 H10 QO4 sing 324 n n C1 H11 QO4 sing 325 n n C1 H12 QO4 sing 326 n n C2 H13 QO4 sing 327 n n C3 H14 QO4 sing 328 n n C3 H15 QO4 sing 329 n n C11 H16 QO4 sing 330 n n C11 H17 QO4 sing 331 n n C14 H18 QO4 sing 332 n n C14 H19 QO4 sing 333 n n C19 H20 QO4 sing 334 n n N25 H21 QO4 sing 335 n n N30 H22 QO4 sing 336 n n C32 H23 QO4 sing 337 n n # _atom_sites.entry_id 6V3W _atom_sites.fract_transf_matrix[1][1] 0.012428 _atom_sites.fract_transf_matrix[1][2] 0.007175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QO4 A 1 701 1 QO4 LIG . C 3 CL A 1 702 1 CL CL . D 4 HOH A 1 801 3 HOH HOH . D 4 HOH A 2 802 46 HOH HOH . D 4 HOH A 3 803 28 HOH HOH . D 4 HOH A 4 804 36 HOH HOH . D 4 HOH A 5 805 35 HOH HOH . D 4 HOH A 6 806 14 HOH HOH . D 4 HOH A 7 807 30 HOH HOH . D 4 HOH A 8 808 22 HOH HOH . D 4 HOH A 9 809 29 HOH HOH . D 4 HOH A 10 810 48 HOH HOH . D 4 HOH A 11 811 10 HOH HOH . D 4 HOH A 12 812 16 HOH HOH . D 4 HOH A 13 813 33 HOH HOH . D 4 HOH A 14 814 2 HOH HOH . D 4 HOH A 15 815 24 HOH HOH . D 4 HOH A 16 816 20 HOH HOH . D 4 HOH A 17 817 17 HOH HOH . D 4 HOH A 18 818 1 HOH HOH . D 4 HOH A 19 819 27 HOH HOH . D 4 HOH A 20 820 7 HOH HOH . D 4 HOH A 21 821 49 HOH HOH . D 4 HOH A 22 822 18 HOH HOH . D 4 HOH A 23 823 9 HOH HOH . D 4 HOH A 24 824 6 HOH HOH . D 4 HOH A 25 825 5 HOH HOH . D 4 HOH A 26 826 34 HOH HOH . D 4 HOH A 27 827 25 HOH HOH . D 4 HOH A 28 828 26 HOH HOH . D 4 HOH A 29 829 8 HOH HOH . D 4 HOH A 30 830 42 HOH HOH . D 4 HOH A 31 831 11 HOH HOH . D 4 HOH A 32 832 47 HOH HOH . D 4 HOH A 33 833 37 HOH HOH . D 4 HOH A 34 834 38 HOH HOH . D 4 HOH A 35 835 31 HOH HOH . D 4 HOH A 36 836 12 HOH HOH . D 4 HOH A 37 837 19 HOH HOH . D 4 HOH A 38 838 39 HOH HOH . D 4 HOH A 39 839 41 HOH HOH . D 4 HOH A 40 840 23 HOH HOH . D 4 HOH A 41 841 40 HOH HOH . D 4 HOH A 42 842 4 HOH HOH . D 4 HOH A 43 843 15 HOH HOH . D 4 HOH A 44 844 21 HOH HOH . D 4 HOH A 45 845 13 HOH HOH . D 4 HOH A 46 846 45 HOH HOH . D 4 HOH A 47 847 32 HOH HOH . D 4 HOH A 48 848 43 HOH HOH . D 4 HOH A 49 849 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 QO4 . . . B 2 -28.884 21.923 -10.25 1 66 ? C5 QO4 701 A 1 HETATM 2 C C6 QO4 . . . B 2 -28.168 23.279 -10.327 1 66.92 ? C6 QO4 701 A 1 HETATM 3 C C7 QO4 . . . B 2 -26.666 23.191 -10.118 1 61.93 ? C7 QO4 701 A 1 HETATM 4 C C10 QO4 . . . B 2 -26.451 25.566 -10.714 1 67.12 ? C10 QO4 701 A 1 HETATM 5 N N12 QO4 . . . B 2 -24.348 26.675 -9.866 1 71.2 ? N12 QO4 701 A 1 HETATM 6 C C13 QO4 . . . B 2 -23.933 25.396 -9.262 1 69.78 ? C13 QO4 701 A 1 HETATM 7 C C15 QO4 . . . B 2 -23.537 27.809 -9.944 1 66.66 ? C15 QO4 701 A 1 HETATM 8 C C17 QO4 . . . B 2 -21.731 28.984 -9.093 1 63.76 ? C17 QO4 701 A 1 HETATM 9 C C21 QO4 . . . B 2 -21.107 31.266 -9.901 1 67.08 ? C21 QO4 701 A 1 HETATM 10 C C26 QO4 . . . B 2 -27.288 19.567 -13.967 1 59.19 ? C26 QO4 701 A 1 HETATM 11 C C28 QO4 . . . B 2 -25.159 19.382 -15.096 1 56.14 ? C28 QO4 701 A 1 HETATM 12 C C1 QO4 . . . B 2 -30.778 18.605 -13.154 1 63.3 ? C1 QO4 701 A 1 HETATM 13 C C2 QO4 . . . B 2 -29.677 19.676 -13.105 1 65.86 ? C2 QO4 701 A 1 HETATM 14 C C3 QO4 . . . B 2 -29.816 20.346 -11.734 1 62.51 ? C3 QO4 701 A 1 HETATM 15 O O4 QO4 . . . B 2 -28.823 21.334 -11.551 1 63.74 ? O4 QO4 701 A 1 HETATM 16 O O8 QO4 . . . B 2 -26.177 22.138 -9.797 1 59.01 ? O8 QO4 701 A 1 HETATM 17 N N9 QO4 . . . B 2 -25.874 24.282 -10.27 1 67.91 ? N9 QO4 701 A 1 HETATM 18 C C11 QO4 . . . B 2 -25.759 26.827 -10.227 1 70.82 ? C11 QO4 701 A 1 HETATM 19 C C14 QO4 . . . B 2 -24.425 24.206 -10.073 1 67.17 ? C14 QO4 701 A 1 HETATM 20 N N16 QO4 . . . B 2 -22.517 27.914 -9.101 1 61.98 ? N16 QO4 701 A 1 HETATM 21 C C18 QO4 . . . B 2 -21.993 30.047 -9.953 1 67.96 ? C18 QO4 701 A 1 HETATM 22 C C19 QO4 . . . B 2 -23.095 29.947 -10.798 1 65.21 ? C19 QO4 701 A 1 HETATM 23 N N20 QO4 . . . B 2 -23.842 28.834 -10.754 1 69.17 ? N20 QO4 701 A 1 HETATM 24 F F22 QO4 . . . B 2 -21.242 32.029 -11.036 1 77.34 ? F22 QO4 701 A 1 HETATM 25 F F23 QO4 . . . B 2 -21.503 31.999 -8.794 1 74.07 ? F23 QO4 701 A 1 HETATM 26 F F24 QO4 . . . B 2 -19.758 31.002 -9.716 1 77.37 ? F24 QO4 701 A 1 HETATM 27 N N25 QO4 . . . B 2 -28.369 18.996 -13.296 1 61.41 ? N25 QO4 701 A 1 HETATM 28 C C27 QO4 . . . B 2 -26.225 18.78 -14.419 1 57.37 ? C27 QO4 701 A 1 HETATM 29 O O29 QO4 . . . B 2 -24.24 18.706 -15.506 1 58.18 ? O29 QO4 701 A 1 HETATM 30 N N30 QO4 . . . B 2 -25.155 20.709 -15.29 1 57.31 ? N30 QO4 701 A 1 HETATM 31 N N31 QO4 . . . B 2 -26.222 21.483 -14.815 1 63.23 ? N31 QO4 701 A 1 HETATM 32 C C32 QO4 . . . B 2 -27.239 20.954 -14.2 1 56.92 ? C32 QO4 701 A 1 HETATM 33 C C33 QO4 . . . B 2 -26.171 17.3 -14.224 1 58.36 ? C33 QO4 701 A 1 HETATM 34 F F34 QO4 . . . B 2 -27.237 16.873 -13.476 1 70.87 ? F34 QO4 701 A 1 HETATM 35 F F35 QO4 . . . B 2 -25.025 16.941 -13.55 1 62.49 ? F35 QO4 701 A 1 HETATM 36 F F36 QO4 . . . B 2 -26.182 16.657 -15.454 1 63.76 ? F36 QO4 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #