data_6V4A # _model_server_result.job_id r_oZjWeNcN7aN275tqN_gg _model_server_result.datetime_utc '2024-11-21 14:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":701}' # _entry.id 6V4A # _exptl.entry_id 6V4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.17 _cell.angle_gamma 90 _cell.entry_id 6V4A _cell.length_a 141.064 _cell.length_b 116.028 _cell.length_c 169.63 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 275 A CYS 275 1_555 A SG CYS 280 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 371 A CYS 371 1_555 A SG CYS 373 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 275 E CYS 275 1_555 B SG CYS 280 E CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 B SG CYS 371 E CYS 371 1_555 B SG CYS 373 E CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 275 D CYS 275 1_555 C SG CYS 280 D CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 371 D CYS 371 1_555 C SG CYS 373 D CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf7 D SG CYS 275 C CYS 275 1_555 D SG CYS 280 C CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 D SG CYS 371 C CYS 371 1_555 D SG CYS 373 C CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf9 E SG CYS 275 B CYS 275 1_555 E SG CYS 280 B CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf10 E SG CYS 371 B CYS 371 1_555 E SG CYS 373 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 467 n n C C2 TRS sing 468 n n C C3 TRS sing 469 n n C N TRS sing 470 n n C1 O1 TRS sing 471 n n C1 H11 TRS sing 472 n n C1 H12 TRS sing 473 n n C2 O2 TRS sing 474 n n C2 H21 TRS sing 475 n n C2 H22 TRS sing 476 n n C3 O3 TRS sing 477 n n C3 H31 TRS sing 478 n n C3 H32 TRS sing 479 n n N HN1 TRS sing 480 n n N HN2 TRS sing 481 n n N HN3 TRS sing 482 n n O1 HO1 TRS sing 483 n n O2 HO2 TRS sing 484 n n O3 HO3 TRS sing 485 n n # _atom_sites.entry_id 6V4A _atom_sites.fract_transf_matrix[1][1] 0.007089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 TRS A 1 701 1 TRS TRS . G 3 P3A A 1 702 1 P3A P3A . H 3 P3A A 1 703 2 P3A P3A . I 2 TRS E 1 701 2 TRS TRS . J 3 P3A E 1 702 3 P3A P3A . K 2 TRS D 1 701 3 TRS TRS . L 2 TRS C 1 701 4 TRS TRS . M 3 P3A C 1 702 4 P3A P3A . N 2 TRS B 1 701 5 TRS TRS . O 3 P3A B 1 702 5 P3A P3A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . K 2 -28.976 -30.898 46.469 1 158.71 ? C TRS 701 D 1 HETATM 2 C C1 TRS . . . K 2 -27.706 -30.426 45.766 1 150.19 ? C1 TRS 701 D 1 HETATM 3 C C2 TRS . . . K 2 -29.756 -29.701 47.001 1 165.34 ? C2 TRS 701 D 1 HETATM 4 C C3 TRS . . . K 2 -28.641 -31.885 47.588 1 162.61 ? C3 TRS 701 D 1 HETATM 5 N N TRS . . . K 2 -29.83 -31.622 45.484 1 160.6 ? N TRS 701 D 1 HETATM 6 O O1 TRS . . . K 2 -28.007 -29.496 44.713 1 134.1 ? O1 TRS 701 D 1 HETATM 7 O O2 TRS . . . K 2 -28.89 -28.859 47.775 1 168.3 ? O2 TRS 701 D 1 HETATM 8 O O3 TRS . . . K 2 -28.155 -31.225 48.766 1 165.04 ? O3 TRS 701 D 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #