data_6V4A # _model_server_result.job_id qYngWDsF3WjrvnPnaz-35g _model_server_result.datetime_utc '2024-11-21 14:40:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":702}' # _entry.id 6V4A # _exptl.entry_id 6V4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 872.997 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLGLYCEROL-PHOSPHOGLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.17 _cell.angle_gamma 90 _cell.entry_id 6V4A _cell.length_a 141.064 _cell.length_b 116.028 _cell.length_c 169.63 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 J N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 275 A CYS 275 1_555 A SG CYS 280 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 371 A CYS 371 1_555 A SG CYS 373 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 275 E CYS 275 1_555 B SG CYS 280 E CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 B SG CYS 371 E CYS 371 1_555 B SG CYS 373 E CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 275 D CYS 275 1_555 C SG CYS 280 D CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 371 D CYS 371 1_555 C SG CYS 373 D CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf7 D SG CYS 275 C CYS 275 1_555 D SG CYS 280 C CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 D SG CYS 371 C CYS 371 1_555 D SG CYS 373 C CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf9 E SG CYS 275 B CYS 275 1_555 E SG CYS 280 B CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf10 E SG CYS 371 B CYS 371 1_555 E SG CYS 373 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C41 H78 O15 P2 -2' _chem_comp.formula_weight 872.997 _chem_comp.id P3A _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLGLYCEROL-PHOSPHOGLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O43 C42 P3A doub 235 n n C42 C44 P3A sing 236 n n C42 O41 P3A sing 237 n n C44 C45 P3A sing 238 n n C44 H441 P3A sing 239 n n C44 H442 P3A sing 240 n n C45 C46 P3A sing 241 n n C45 H451 P3A sing 242 n n C45 H452 P3A sing 243 n n C46 C47 P3A sing 244 n n C46 H461 P3A sing 245 n n C46 H462 P3A sing 246 n n C47 C48 P3A sing 247 n n C47 H471 P3A sing 248 n n C47 H472 P3A sing 249 n n C48 C49 P3A sing 250 n n C48 H481 P3A sing 251 n n C48 H482 P3A sing 252 n n C49 C50 P3A sing 253 n n C49 H491 P3A sing 254 n n C49 H492 P3A sing 255 n n C50 C51 P3A sing 256 n n C50 H501 P3A sing 257 n n C50 H502 P3A sing 258 n n C51 C52 P3A sing 259 n n C51 H511 P3A sing 260 n n C51 H512 P3A sing 261 n n C52 C53 P3A sing 262 n n C52 H521 P3A sing 263 n n C52 H522 P3A sing 264 n n C53 C54 P3A sing 265 n n C53 H531 P3A sing 266 n n C53 H532 P3A sing 267 n n C54 C55 P3A sing 268 n n C54 H541 P3A sing 269 n n C54 H542 P3A sing 270 n n C55 C56 P3A sing 271 n n C55 H551 P3A sing 272 n n C55 H552 P3A sing 273 n n C56 C57 P3A sing 274 n n C56 H561 P3A sing 275 n n C56 H562 P3A sing 276 n n C57 C58 P3A sing 277 n n C57 H571 P3A sing 278 n n C57 H572 P3A sing 279 n n C58 H581 P3A sing 280 n n C58 H582 P3A sing 281 n n C58 H583 P3A sing 282 n n O41 C40 P3A sing 283 n n C40 C38 P3A sing 284 n n C40 H401 P3A sing 285 n n C40 H402 P3A sing 286 n n C38 C39 P3A sing 287 n n C38 O37 P3A sing 288 n n C38 H38 P3A sing 289 n n C39 O19 P3A sing 290 n n C39 H391 P3A sing 291 n n C39 H392 P3A sing 292 n n O19 P16 P3A sing 293 n n P16 O17 P3A doub 294 n n P16 O18 P3A sing 295 n n P16 O15 P3A sing 296 n n O15 C14 P3A sing 297 n n C14 C6 P3A sing 298 n n C14 H141 P3A sing 299 n n C14 H142 P3A sing 300 n n C6 O7 P3A sing 301 n n C6 C8 P3A sing 302 n n C6 H6 P3A sing 303 n n O7 HO7 P3A sing 304 n n C8 O9 P3A sing 305 n n C8 H81 P3A sing 306 n n C8 H82 P3A sing 307 n n O9 P10 P3A sing 308 n n P10 O12 P3A doub 309 n n P10 O13 P3A sing 310 n n P10 O11 P3A sing 311 n n O11 C1 P3A sing 312 n n C1 C2 P3A sing 313 n n C1 H11 P3A sing 314 n n C1 H12 P3A sing 315 n n C2 C4 P3A sing 316 n n C2 O3 P3A sing 317 n n C2 H2 P3A sing 318 n n C4 O5 P3A sing 319 n n C4 H41 P3A sing 320 n n C4 H42 P3A sing 321 n n O5 HO5 P3A sing 322 n n O3 HO3 P3A sing 323 n n O37 C21 P3A sing 324 n n C21 O20 P3A doub 325 n n C21 C22 P3A sing 326 n n C22 C23 P3A sing 327 n n C22 H221 P3A sing 328 n n C22 H222 P3A sing 329 n n C23 C24 P3A sing 330 n n C23 H231 P3A sing 331 n n C23 H232 P3A sing 332 n n C24 C25 P3A sing 333 n n C24 H241 P3A sing 334 n n C24 H242 P3A sing 335 n n C25 C26 P3A sing 336 n n C25 H251 P3A sing 337 n n C25 H252 P3A sing 338 n n C26 C27 P3A sing 339 n n C26 H261 P3A sing 340 n n C26 H262 P3A sing 341 n n C27 C28 P3A sing 342 n n C27 H271 P3A sing 343 n n C27 H272 P3A sing 344 n n C28 C29 P3A sing 345 n n C28 H281 P3A sing 346 n n C28 H282 P3A sing 347 n n C29 C30 P3A doub 348 z n C29 H29 P3A sing 349 n n C30 C31 P3A sing 350 n n C30 H30 P3A sing 351 n n C31 C32 P3A sing 352 n n C31 H311 P3A sing 353 n n C31 H312 P3A sing 354 n n C32 C33 P3A sing 355 n n C32 H321 P3A sing 356 n n C32 H322 P3A sing 357 n n C33 C34 P3A sing 358 n n C33 H331 P3A sing 359 n n C33 H332 P3A sing 360 n n C34 C35 P3A sing 361 n n C34 H341 P3A sing 362 n n C34 H342 P3A sing 363 n n C35 C36 P3A sing 364 n n C35 H351 P3A sing 365 n n C35 H352 P3A sing 366 n n C36 H361 P3A sing 367 n n C36 H362 P3A sing 368 n n C36 H363 P3A sing 369 n n # _atom_sites.entry_id 6V4A _atom_sites.fract_transf_matrix[1][1] 0.007089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 TRS A 1 701 1 TRS TRS . G 3 P3A A 1 702 1 P3A P3A . H 3 P3A A 1 703 2 P3A P3A . I 2 TRS E 1 701 2 TRS TRS . J 3 P3A E 1 702 3 P3A P3A . K 2 TRS D 1 701 3 TRS TRS . L 2 TRS C 1 701 4 TRS TRS . M 3 P3A C 1 702 4 P3A P3A . N 2 TRS B 1 701 5 TRS TRS . O 3 P3A B 1 702 5 P3A P3A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C39 P3A . . . M 3 -110.599 -7.056 30.212 1 258.71 ? C39 P3A 702 C 1 HETATM 2 O O19 P3A . . . M 3 -109.189 -7.311 30.213 1 269.29 ? O19 P3A 702 C 1 HETATM 3 P P16 P3A . . . M 3 -108.312 -7.348 28.849 1 271.71 ? P16 P3A 702 C 1 HETATM 4 O O17 P3A . . . M 3 -109.209 -7.85 27.739 1 276.15 ? O17 P3A 702 C 1 HETATM 5 O O18 P3A . . . M 3 -107.624 -6.007 28.687 1 268.62 ? O18 P3A 702 C 1 HETATM 6 O O15 P3A . . . M 3 -107.182 -8.483 29.128 1 258.94 ? O15 P3A 702 C 1 HETATM 7 C C14 P3A . . . M 3 -106.172 -8.796 28.156 1 239.6 ? C14 P3A 702 C 1 HETATM 8 C C6 P3A . . . M 3 -104.891 -9.393 28.762 1 227.95 ? C6 P3A 702 C 1 HETATM 9 O O7 P3A . . . M 3 -105.147 -10.72 29.253 1 214.6 ? O7 P3A 702 C 1 HETATM 10 C C8 P3A . . . M 3 -104.316 -8.514 29.883 1 224.44 ? C8 P3A 702 C 1 HETATM 11 O O9 P3A . . . M 3 -103.152 -7.8 29.442 1 215.92 ? O9 P3A 702 C 1 HETATM 12 P P10 P3A . . . M 3 -103.102 -6.19 29.244 1 211.65 ? P10 P3A 702 C 1 HETATM 13 O O12 P3A . . . M 3 -104.006 -5.841 28.082 1 217.06 ? O12 P3A 702 C 1 HETATM 14 O O13 P3A . . . M 3 -101.646 -5.783 29.211 1 199.12 ? O13 P3A 702 C 1 HETATM 15 O O11 P3A . . . M 3 -103.75 -5.565 30.591 1 201.29 ? O11 P3A 702 C 1 HETATM 16 C C1 P3A . . . M 3 -104.338 -4.257 30.65 1 179.72 ? C1 P3A 702 C 1 HETATM 17 C C2 P3A . . . M 3 -105.106 -4.091 31.966 1 164.33 ? C2 P3A 702 C 1 HETATM 18 C C4 P3A . . . M 3 -106.402 -3.311 31.77 1 151.63 ? C4 P3A 702 C 1 HETATM 19 O O5 P3A . . . M 3 -107.158 -3.378 32.983 1 141.87 ? O5 P3A 702 C 1 HETATM 20 O O3 P3A . . . M 3 -104.286 -3.415 32.929 1 159.13 ? O3 P3A 702 C 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 20 #