data_6V4C
#
_model_server_result.job_id            PaDbUf4eMzzL9fObXGVfGA 
_model_server_result.datetime_utc      '2025-06-18 13:15:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v4c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6V4C 
#
_exptl.entry_id    6V4C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6V4C 
_cell.length_a            76.66 
_cell.length_b            84.32 
_cell.length_c            132.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V4C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 18 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 47 A CYS 47 1_555 A SG CYS 104 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 186 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 167 A CYS 167 1_555 A SG CYS 295 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 A SG CYS 228 A CYS 228 1_555 A SG CYS 242 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 L ZN ZN . A ZN 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc2 A ND1 HIS 172 A HIS 172 1_555 L ZN ZN . A ZN 311 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc3 A OE1 GLU 249 A GLU 249 1_555 L ZN ZN . A ZN 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc4 A OE2 GLU 249 A GLU 249 1_555 L ZN ZN . A ZN 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc5 A OE1 GLU 249 A GLU 249 1_555 L ZN ZN . A ZN 311 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc6 A OE2 GLU 249 A GLU 249 1_555 L ZN ZN . A ZN 311 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 197 n n 
C1 C2 GOL sing 198 n n 
C1 H11 GOL sing 199 n n 
C1 H12 GOL sing 200 n n 
O1 HO1 GOL sing 201 n n 
C2 O2 GOL sing 202 n n 
C2 C3 GOL sing 203 n n 
C2 H2 GOL sing 204 n n 
O2 HO2 GOL sing 205 n n 
C3 O3 GOL sing 206 n n 
C3 H31 GOL sing 207 n n 
C3 H32 GOL sing 208 n n 
O3 HO3 GOL sing 209 n n 
#
_atom_sites.entry_id                     6V4C 
_atom_sites.fract_transf_matrix[1][1]    0.013045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007572 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 301 301 ADP ADP . 
C 3 GOL A 1 302 401 GOL GOL . 
D 3 GOL A 1 303 402 GOL GOL . 
E 3 GOL A 1 304 403 GOL GOL . 
F 3 GOL A 1 305 404 GOL GOL . 
G 4 ETX A 1 306 501 ETX ETX . 
H 4 ETX A 1 307 502 ETX ETX . 
I 5 PEG A 1 308 503 PEG PEG . 
J 6 EDO A 1 309 504 EDO EDO . 
K 6 EDO A 1 310 505 EDO EDO . 
L 7 ZN A 1 311 1 ZN ZN . 
M 7 ZN A 1 312 2 ZN ZN . 
N 8 HOH A 1 401 22 HOH HOH . 
N 8 HOH A 2 402 16 HOH HOH . 
N 8 HOH A 3 403 13 HOH HOH . 
N 8 HOH A 4 404 15 HOH HOH . 
N 8 HOH A 5 405 80 HOH HOH . 
N 8 HOH A 6 406 33 HOH HOH . 
N 8 HOH A 7 407 92 HOH HOH . 
N 8 HOH A 8 408 49 HOH HOH . 
N 8 HOH A 9 409 6 HOH HOH . 
N 8 HOH A 10 410 47 HOH HOH . 
N 8 HOH A 11 411 25 HOH HOH . 
N 8 HOH A 12 412 104 HOH HOH . 
N 8 HOH A 13 413 97 HOH HOH . 
N 8 HOH A 14 414 95 HOH HOH . 
N 8 HOH A 15 415 29 HOH HOH . 
N 8 HOH A 16 416 28 HOH HOH . 
N 8 HOH A 17 417 82 HOH HOH . 
N 8 HOH A 18 418 23 HOH HOH . 
N 8 HOH A 19 419 1 HOH HOH . 
N 8 HOH A 20 420 32 HOH HOH . 
N 8 HOH A 21 421 39 HOH HOH . 
N 8 HOH A 22 422 36 HOH HOH . 
N 8 HOH A 23 423 53 HOH HOH . 
N 8 HOH A 24 424 78 HOH HOH . 
N 8 HOH A 25 425 106 HOH HOH . 
N 8 HOH A 26 426 18 HOH HOH . 
N 8 HOH A 27 427 45 HOH HOH . 
N 8 HOH A 28 428 19 HOH HOH . 
N 8 HOH A 29 429 77 HOH HOH . 
N 8 HOH A 30 430 73 HOH HOH . 
N 8 HOH A 31 431 21 HOH HOH . 
N 8 HOH A 32 432 114 HOH HOH . 
N 8 HOH A 33 433 117 HOH HOH . 
N 8 HOH A 34 434 66 HOH HOH . 
N 8 HOH A 35 435 17 HOH HOH . 
N 8 HOH A 36 436 89 HOH HOH . 
N 8 HOH A 37 437 64 HOH HOH . 
N 8 HOH A 38 438 55 HOH HOH . 
N 8 HOH A 39 439 99 HOH HOH . 
N 8 HOH A 40 440 24 HOH HOH . 
N 8 HOH A 41 441 37 HOH HOH . 
N 8 HOH A 42 442 2 HOH HOH . 
N 8 HOH A 43 443 96 HOH HOH . 
N 8 HOH A 44 444 93 HOH HOH . 
N 8 HOH A 45 445 109 HOH HOH . 
N 8 HOH A 46 446 34 HOH HOH . 
N 8 HOH A 47 447 58 HOH HOH . 
N 8 HOH A 48 448 105 HOH HOH . 
N 8 HOH A 49 449 102 HOH HOH . 
N 8 HOH A 50 450 79 HOH HOH . 
N 8 HOH A 51 451 27 HOH HOH . 
N 8 HOH A 52 452 63 HOH HOH . 
N 8 HOH A 53 453 121 HOH HOH . 
N 8 HOH A 54 454 91 HOH HOH . 
N 8 HOH A 55 455 42 HOH HOH . 
N 8 HOH A 56 456 81 HOH HOH . 
N 8 HOH A 57 457 83 HOH HOH . 
N 8 HOH A 58 458 5 HOH HOH . 
N 8 HOH A 59 459 51 HOH HOH . 
N 8 HOH A 60 460 74 HOH HOH . 
N 8 HOH A 61 461 69 HOH HOH . 
N 8 HOH A 62 462 26 HOH HOH . 
N 8 HOH A 63 463 4 HOH HOH . 
N 8 HOH A 64 464 8 HOH HOH . 
N 8 HOH A 65 465 43 HOH HOH . 
N 8 HOH A 66 466 7 HOH HOH . 
N 8 HOH A 67 467 48 HOH HOH . 
N 8 HOH A 68 468 3 HOH HOH . 
N 8 HOH A 69 469 38 HOH HOH . 
N 8 HOH A 70 470 10 HOH HOH . 
N 8 HOH A 71 471 72 HOH HOH . 
N 8 HOH A 72 472 20 HOH HOH . 
N 8 HOH A 73 473 54 HOH HOH . 
N 8 HOH A 74 474 119 HOH HOH . 
N 8 HOH A 75 475 59 HOH HOH . 
N 8 HOH A 76 476 46 HOH HOH . 
N 8 HOH A 77 477 115 HOH HOH . 
N 8 HOH A 78 478 111 HOH HOH . 
N 8 HOH A 79 479 68 HOH HOH . 
N 8 HOH A 80 480 67 HOH HOH . 
N 8 HOH A 81 481 100 HOH HOH . 
N 8 HOH A 82 482 120 HOH HOH . 
N 8 HOH A 83 483 94 HOH HOH . 
N 8 HOH A 84 484 35 HOH HOH . 
N 8 HOH A 85 485 30 HOH HOH . 
N 8 HOH A 86 486 62 HOH HOH . 
N 8 HOH A 87 487 103 HOH HOH . 
N 8 HOH A 88 488 85 HOH HOH . 
N 8 HOH A 89 489 52 HOH HOH . 
N 8 HOH A 90 490 65 HOH HOH . 
N 8 HOH A 91 491 57 HOH HOH . 
N 8 HOH A 92 492 71 HOH HOH . 
N 8 HOH A 93 493 44 HOH HOH . 
N 8 HOH A 94 494 87 HOH HOH . 
N 8 HOH A 95 495 14 HOH HOH . 
N 8 HOH A 96 496 56 HOH HOH . 
N 8 HOH A 97 497 75 HOH HOH . 
N 8 HOH A 98 498 90 HOH HOH . 
N 8 HOH A 99 499 40 HOH HOH . 
N 8 HOH A 100 500 86 HOH HOH . 
N 8 HOH A 101 501 12 HOH HOH . 
N 8 HOH A 102 502 108 HOH HOH . 
N 8 HOH A 103 503 107 HOH HOH . 
N 8 HOH A 104 504 112 HOH HOH . 
N 8 HOH A 105 505 113 HOH HOH . 
N 8 HOH A 106 506 118 HOH HOH . 
N 8 HOH A 107 507 11 HOH HOH . 
N 8 HOH A 108 508 41 HOH HOH . 
N 8 HOH A 109 509 110 HOH HOH . 
N 8 HOH A 110 510 70 HOH HOH . 
N 8 HOH A 111 511 88 HOH HOH . 
N 8 HOH A 112 512 9 HOH HOH . 
N 8 HOH A 113 513 98 HOH HOH . 
N 8 HOH A 114 514 76 HOH HOH . 
N 8 HOH A 115 515 101 HOH HOH . 
N 8 HOH A 116 516 31 HOH HOH . 
N 8 HOH A 117 517 116 HOH HOH . 
N 8 HOH A 118 518 50 HOH HOH . 
N 8 HOH A 119 519 84 HOH HOH . 
N 8 HOH A 120 520 60 HOH HOH . 
N 8 HOH A 121 521 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 21.153 -8.01 -28.997 0.91 58.25 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 3 20.849 -6.66 -29.301 0.91 66.09 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 3 22.195 -8.622 -29.88 0.91 62.08 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 3 23.428 -8.472 -29.22 0.91 64.56 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 3 21.995 -10.092 -30.108 0.91 59.5 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 3 21.491 -10.406 -31.392 0.91 55.09 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#