data_6V53 # _model_server_result.job_id eW6abcmgaeF2fqpSHEm8rA _model_server_result.datetime_utc '2024-11-24 21:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6V53 # _exptl.entry_id 6V53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V53 _cell.length_a 89.731 _cell.length_b 89.731 _cell.length_c 132.135 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A OE1 GLU 81 A GLU 61 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 A OD2 ASP 109 A ASP 89 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A OD1 ASP 109 A ASP 89 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 A OE2 GLU 120 A GLU 100 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc6 A O ILE 121 A ILE 101 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc7 B O1 QPY . A QPY 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc8 B O2 QPY . A QPY 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc9 B O2 QPY . A QPY 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc10 B O3 QPY . A QPY 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc11 E MN MN . A MN 204 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc12 E MN MN . A MN 204 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 344 n n C21 N02 QQ4 sing 345 n n C20 C19 QQ4 sing 346 n n C19 C42 QQ4 sing 347 n n N02 C12 QQ4 sing 348 n n N02 C42 QQ4 sing 349 n n C12 C11 QQ4 sing 350 n n C42 O05 QQ4 doub 351 n n C38 C41 QQ4 sing 352 n n C38 N07 QQ4 sing 353 n n C41 C40 QQ4 sing 354 n n C10 C09 QQ4 sing 355 n n C11 C01 QQ4 sing 356 n n C40 C39 QQ4 sing 357 n n N07 C09 QQ4 sing 358 n n N07 C39 QQ4 sing 359 n n C01 C02 QQ4 sing 360 n n C01 N03 QQ4 sing 361 n n C08 C09 QQ4 sing 362 n n C08 C07 QQ4 sing 363 n n C02 C03 QQ4 sing 364 n n C39 O07 QQ4 doub 365 n n C26 C27 QQ4 sing 366 n n C26 N04 QQ4 sing 367 n n C22 N03 QQ4 sing 368 n n C22 C25 QQ4 sing 369 n n N03 C23 QQ4 sing 370 n n C06 C07 QQ4 sing 371 n n C06 C05 QQ4 sing 372 n n C07 N06 QQ4 sing 373 n n C27 C28 QQ4 sing 374 n n C03 N04 QQ4 sing 375 n n C03 C04 QQ4 sing 376 n n C25 C24 QQ4 sing 377 n n N04 C29 QQ4 sing 378 n n C04 C05 QQ4 sing 379 n n O04 C30 QQ4 doub 380 n n C23 O02 QQ4 doub 381 n n C23 C24 QQ4 sing 382 n n C05 N05 QQ4 sing 383 n n N06 C34 QQ4 sing 384 n n N06 C37 QQ4 sing 385 n n C34 C35 QQ4 sing 386 n n C28 C29 QQ4 sing 387 n n C29 O03 QQ4 doub 388 n n C30 N05 QQ4 sing 389 n n C30 C31 QQ4 sing 390 n n N05 C33 QQ4 sing 391 n n C37 O06 QQ4 doub 392 n n C37 C36 QQ4 sing 393 n n C35 C36 QQ4 sing 394 n n C31 C32 QQ4 sing 395 n n C33 C32 QQ4 sing 396 n n C12 H1 QQ4 sing 397 n n C12 H2 QQ4 sing 398 n n C11 H3 QQ4 sing 399 n n C11 H4 QQ4 sing 400 n n C10 H5 QQ4 sing 401 n n C10 H6 QQ4 sing 402 n n C10 H7 QQ4 sing 403 n n C01 H8 QQ4 sing 404 n n C02 H9 QQ4 sing 405 n n C02 H10 QQ4 sing 406 n n C03 H11 QQ4 sing 407 n n C04 H12 QQ4 sing 408 n n C04 H13 QQ4 sing 409 n n C05 H14 QQ4 sing 410 n n C06 H15 QQ4 sing 411 n n C06 H16 QQ4 sing 412 n n C07 H17 QQ4 sing 413 n n C08 H18 QQ4 sing 414 n n C08 H19 QQ4 sing 415 n n C09 H20 QQ4 sing 416 n n C19 H21 QQ4 sing 417 n n C19 H22 QQ4 sing 418 n n C20 H23 QQ4 sing 419 n n C20 H24 QQ4 sing 420 n n C21 H25 QQ4 sing 421 n n C21 H26 QQ4 sing 422 n n C22 H27 QQ4 sing 423 n n C22 H28 QQ4 sing 424 n n C24 H29 QQ4 sing 425 n n C24 H30 QQ4 sing 426 n n C25 H31 QQ4 sing 427 n n C25 H32 QQ4 sing 428 n n C26 H33 QQ4 sing 429 n n C26 H34 QQ4 sing 430 n n C27 H35 QQ4 sing 431 n n C27 H36 QQ4 sing 432 n n C28 H37 QQ4 sing 433 n n C28 H38 QQ4 sing 434 n n C31 H39 QQ4 sing 435 n n C31 H40 QQ4 sing 436 n n C32 H41 QQ4 sing 437 n n C32 H42 QQ4 sing 438 n n C33 H43 QQ4 sing 439 n n C33 H44 QQ4 sing 440 n n C34 H45 QQ4 sing 441 n n C34 H46 QQ4 sing 442 n n C35 H47 QQ4 sing 443 n n C35 H48 QQ4 sing 444 n n C36 H49 QQ4 sing 445 n n C36 H50 QQ4 sing 446 n n C38 H51 QQ4 sing 447 n n C38 H52 QQ4 sing 448 n n C40 H53 QQ4 sing 449 n n C40 H54 QQ4 sing 450 n n C41 H55 QQ4 sing 451 n n C41 H56 QQ4 sing 452 n n # _atom_sites.entry_id 6V53 _atom_sites.fract_transf_matrix[1][1] 0.011144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QPY A 1 201 181 QPY 494 . C 3 QQ4 A 1 202 201 QQ4 PVP . D 4 MN A 1 203 1 MN MN . E 4 MN A 1 204 2 MN MN . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 9 HOH HOH . H 6 HOH A 2 302 2 HOH HOH . H 6 HOH A 3 303 14 HOH HOH . H 6 HOH A 4 304 39 HOH HOH . H 6 HOH A 5 305 15 HOH HOH . H 6 HOH A 6 306 11 HOH HOH . H 6 HOH A 7 307 7 HOH HOH . H 6 HOH A 8 308 3 HOH HOH . H 6 HOH A 9 309 57 HOH HOH . H 6 HOH A 10 310 25 HOH HOH . H 6 HOH A 11 311 16 HOH HOH . H 6 HOH A 12 312 8 HOH HOH . H 6 HOH A 13 313 35 HOH HOH . H 6 HOH A 14 314 4 HOH HOH . H 6 HOH A 15 315 5 HOH HOH . H 6 HOH A 16 316 13 HOH HOH . H 6 HOH A 17 317 42 HOH HOH . H 6 HOH A 18 318 47 HOH HOH . H 6 HOH A 19 319 51 HOH HOH . H 6 HOH A 20 320 1 HOH HOH . H 6 HOH A 21 321 10 HOH HOH . H 6 HOH A 22 322 22 HOH HOH . H 6 HOH A 23 323 6 HOH HOH . H 6 HOH A 24 324 38 HOH HOH . H 6 HOH A 25 325 48 HOH HOH . H 6 HOH A 26 326 55 HOH HOH . H 6 HOH A 27 327 58 HOH HOH . H 6 HOH A 28 328 34 HOH HOH . H 6 HOH A 29 329 27 HOH HOH . H 6 HOH A 30 330 17 HOH HOH . H 6 HOH A 31 331 18 HOH HOH . H 6 HOH A 32 332 24 HOH HOH . H 6 HOH A 33 333 12 HOH HOH . H 6 HOH A 34 334 36 HOH HOH . H 6 HOH A 35 335 31 HOH HOH . H 6 HOH A 36 336 32 HOH HOH . H 6 HOH A 37 337 29 HOH HOH . H 6 HOH A 38 338 43 HOH HOH . H 6 HOH A 39 339 23 HOH HOH . H 6 HOH A 40 340 19 HOH HOH . H 6 HOH A 41 341 56 HOH HOH . H 6 HOH A 42 342 49 HOH HOH . H 6 HOH A 43 343 30 HOH HOH . H 6 HOH A 44 344 37 HOH HOH . H 6 HOH A 45 345 26 HOH HOH . H 6 HOH A 46 346 40 HOH HOH . H 6 HOH A 47 347 28 HOH HOH . H 6 HOH A 48 348 45 HOH HOH . H 6 HOH A 49 349 46 HOH HOH . H 6 HOH A 50 350 44 HOH HOH . H 6 HOH A 51 351 41 HOH HOH . H 6 HOH A 52 352 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 QQ4 . . . C 3 2.8 -14.832 8.625 1 96.94 ? C12 QQ4 202 A 1 HETATM 2 C C11 QQ4 . . . C 3 2.467 -14.222 9.986 1 96.56 ? C11 QQ4 202 A 1 HETATM 3 C C10 QQ4 . . . C 3 -3.481 -7.534 9.402 1 116.32 ? C10 QQ4 202 A 1 HETATM 4 C C01 QQ4 . . . C 3 1.301 -14.951 10.648 1 99.14 ? C01 QQ4 202 A 1 HETATM 5 C C02 QQ4 . . . C 3 0.3 -13.889 11.145 1 105.45 ? C02 QQ4 202 A 1 HETATM 6 C C03 QQ4 . . . C 3 -0.061 -13.935 12.634 1 97.88 ? C03 QQ4 202 A 1 HETATM 7 C C04 QQ4 . . . C 3 -1.588 -13.777 12.814 1 98.56 ? C04 QQ4 202 A 1 HETATM 8 C C05 QQ4 . . . C 3 -2.073 -12.331 12.999 1 104.57 ? C05 QQ4 202 A 1 HETATM 9 C C06 QQ4 . . . C 3 -2.436 -11.703 11.646 1 108.38 ? C06 QQ4 202 A 1 HETATM 10 C C07 QQ4 . . . C 3 -3.152 -10.357 11.809 1 112.45 ? C07 QQ4 202 A 1 HETATM 11 C C08 QQ4 . . . C 3 -3.485 -9.814 10.417 1 112.9 ? C08 QQ4 202 A 1 HETATM 12 C C09 QQ4 . . . C 3 -4.052 -8.398 10.528 1 126.5 ? C09 QQ4 202 A 1 HETATM 13 C C19 QQ4 . . . C 3 6.304 -16.341 9.101 1 97.16 ? C19 QQ4 202 A 1 HETATM 14 C C20 QQ4 . . . C 3 5.551 -17.381 8.303 1 105.06 ? C20 QQ4 202 A 1 HETATM 15 C C21 QQ4 . . . C 3 4.401 -16.61 7.672 1 92 ? C21 QQ4 202 A 1 HETATM 16 C C22 QQ4 . . . C 3 1.366 -17.289 11.74 1 75.74 ? C22 QQ4 202 A 1 HETATM 17 C C23 QQ4 . . . C 3 2.783 -15.658 12.72 1 96.8 ? C23 QQ4 202 A 1 HETATM 18 C C24 QQ4 . . . C 3 2.971 -16.961 13.5 1 75.3 ? C24 QQ4 202 A 1 HETATM 19 C C25 QQ4 . . . C 3 2.427 -18.016 12.554 1 63.06 ? C25 QQ4 202 A 1 HETATM 20 C C26 QQ4 . . . C 3 1.601 -11.959 12.683 1 112.95 ? C26 QQ4 202 A 1 HETATM 21 C C27 QQ4 . . . C 3 1.964 -10.902 13.73 1 117.2 ? C27 QQ4 202 A 1 HETATM 22 C C28 QQ4 . . . C 3 1.64 -11.534 15.08 1 112.64 ? C28 QQ4 202 A 1 HETATM 23 C C29 QQ4 . . . C 3 0.71 -12.69 14.755 1 112.33 ? C29 QQ4 202 A 1 HETATM 24 C C30 QQ4 . . . C 3 -4.605 -12.681 13.669 1 99.83 ? C30 QQ4 202 A 1 HETATM 25 C C31 QQ4 . . . C 3 -5.396 -12.481 14.949 1 96.01 ? C31 QQ4 202 A 1 HETATM 26 C C32 QQ4 . . . C 3 -4.53 -11.581 15.789 1 98.68 ? C32 QQ4 202 A 1 HETATM 27 C C33 QQ4 . . . C 3 -3.103 -11.885 15.342 1 96.71 ? C33 QQ4 202 A 1 HETATM 28 C C34 QQ4 . . . C 3 -0.948 -8.971 12.186 1 119.63 ? C34 QQ4 202 A 1 HETATM 29 C C35 QQ4 . . . C 3 -0.407 -8.268 13.438 1 118.85 ? C35 QQ4 202 A 1 HETATM 30 C C36 QQ4 . . . C 3 -1.6 -7.808 14.205 1 120.24 ? C36 QQ4 202 A 1 HETATM 31 C C37 QQ4 . . . C 3 -2.725 -8.7 13.77 1 120.63 ? C37 QQ4 202 A 1 HETATM 32 C C38 QQ4 . . . C 3 -6.284 -8.266 9.219 1 117.86 ? C38 QQ4 202 A 1 HETATM 33 C C39 QQ4 . . . C 3 -6.41 -8.632 11.563 1 118.74 ? C39 QQ4 202 A 1 HETATM 34 C C40 QQ4 . . . C 3 -7.835 -8.59 11.027 1 122.65 ? C40 QQ4 202 A 1 HETATM 35 C C41 QQ4 . . . C 3 -7.69 -7.896 9.688 1 117.45 ? C41 QQ4 202 A 1 HETATM 36 C C42 QQ4 . . . C 3 5.227 -15.354 9.514 1 97.06 ? C42 QQ4 202 A 1 HETATM 37 N N02 QQ4 . . . C 3 4.071 -15.546 8.624 1 106.57 ? N02 QQ4 202 A 1 HETATM 38 N N03 QQ4 . . . C 3 1.792 -15.895 11.659 1 88.92 ? N03 QQ4 202 A 1 HETATM 39 N N04 QQ4 . . . C 3 0.7 -12.908 13.326 1 112.73 ? N04 QQ4 202 A 1 HETATM 40 N N05 QQ4 . . . C 3 -3.203 -12.301 13.931 1 107.31 ? N05 QQ4 202 A 1 HETATM 41 N N06 QQ4 . . . C 3 -2.331 -9.405 12.542 1 119.7 ? N06 QQ4 202 A 1 HETATM 42 N N07 QQ4 . . . C 3 -5.498 -8.43 10.442 1 129.51 ? N07 QQ4 202 A 1 HETATM 43 O O02 QQ4 . . . C 3 3.347 -14.641 12.955 1 106.57 ? O02 QQ4 202 A 1 HETATM 44 O O03 QQ4 . . . C 3 0.075 -13.304 15.543 1 125.28 ? O03 QQ4 202 A 1 HETATM 45 O O04 QQ4 . . . C 3 -5.06 -13.067 12.642 1 88.55 ? O04 QQ4 202 A 1 HETATM 46 O O05 QQ4 . . . C 3 5.339 -14.581 10.408 1 94.04 ? O05 QQ4 202 A 1 HETATM 47 O O06 QQ4 . . . C 3 -3.766 -8.809 14.331 1 118.65 ? O06 QQ4 202 A 1 HETATM 48 O O07 QQ4 . . . C 3 -6.1 -8.796 12.692 1 117.91 ? O07 QQ4 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #