data_6V5F # _model_server_result.job_id sznr_gsCjbLUleaRyvThww _model_server_result.datetime_utc '2024-10-19 23:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 6V5F # _exptl.entry_id 6V5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.94 _cell.angle_gamma 90 _cell.entry_id 6V5F _cell.length_a 57.917 _cell.length_b 125.435 _cell.length_c 68.816 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 77 B CYS 77 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 C SG CYS 77 C CYS 77 1_555 C SG CYS 105 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 D SG CYS 77 D CYS 77 1_555 D SG CYS 105 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 6V5F _atom_sites.fract_transf_matrix[1][1] 0.017266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005258 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ASP A 1 401 1 ASP ASP . F 3 SIN B 1 401 2 SIN SIN . G 3 SIN C 1 401 3 SIN SIN . H 2 ASP D 1 401 2 ASP ASP . I 4 HOH A 1 501 143 HOH HOH . I 4 HOH A 2 502 197 HOH HOH . I 4 HOH A 3 503 1 HOH HOH . I 4 HOH A 4 504 158 HOH HOH . I 4 HOH A 5 505 152 HOH HOH . I 4 HOH A 6 506 174 HOH HOH . I 4 HOH A 7 507 6 HOH HOH . I 4 HOH A 8 508 124 HOH HOH . I 4 HOH A 9 509 196 HOH HOH . I 4 HOH A 10 510 8 HOH HOH . I 4 HOH A 11 511 3 HOH HOH . I 4 HOH A 12 512 150 HOH HOH . I 4 HOH A 13 513 191 HOH HOH . I 4 HOH A 14 514 99 HOH HOH . I 4 HOH A 15 515 202 HOH HOH . I 4 HOH A 16 516 2 HOH HOH . I 4 HOH A 17 517 5 HOH HOH . I 4 HOH A 18 518 187 HOH HOH . I 4 HOH A 19 519 192 HOH HOH . I 4 HOH A 20 520 13 HOH HOH . I 4 HOH A 21 521 11 HOH HOH . I 4 HOH A 22 522 4 HOH HOH . I 4 HOH A 23 523 108 HOH HOH . I 4 HOH A 24 524 7 HOH HOH . I 4 HOH A 25 525 104 HOH HOH . I 4 HOH A 26 526 151 HOH HOH . I 4 HOH A 27 527 9 HOH HOH . I 4 HOH A 28 528 135 HOH HOH . I 4 HOH A 29 529 155 HOH HOH . I 4 HOH A 30 530 12 HOH HOH . I 4 HOH A 31 531 173 HOH HOH . I 4 HOH A 32 532 170 HOH HOH . I 4 HOH A 33 533 193 HOH HOH . I 4 HOH A 34 534 182 HOH HOH . I 4 HOH A 35 535 199 HOH HOH . I 4 HOH A 36 536 200 HOH HOH . I 4 HOH A 37 537 198 HOH HOH . I 4 HOH A 38 538 183 HOH HOH . I 4 HOH A 39 539 195 HOH HOH . I 4 HOH A 40 540 179 HOH HOH . J 4 HOH B 1 501 211 HOH HOH . J 4 HOH B 2 502 110 HOH HOH . J 4 HOH B 3 503 107 HOH HOH . J 4 HOH B 4 504 117 HOH HOH . J 4 HOH B 5 505 69 HOH HOH . J 4 HOH B 6 506 105 HOH HOH . J 4 HOH B 7 507 23 HOH HOH . J 4 HOH B 8 508 18 HOH HOH . J 4 HOH B 9 509 189 HOH HOH . J 4 HOH B 10 510 116 HOH HOH . J 4 HOH B 11 511 153 HOH HOH . J 4 HOH B 12 512 206 HOH HOH . J 4 HOH B 13 513 17 HOH HOH . J 4 HOH B 14 514 24 HOH HOH . J 4 HOH B 15 515 168 HOH HOH . J 4 HOH B 16 516 22 HOH HOH . J 4 HOH B 17 517 20 HOH HOH . J 4 HOH B 18 518 16 HOH HOH . J 4 HOH B 19 519 144 HOH HOH . J 4 HOH B 20 520 161 HOH HOH . J 4 HOH B 21 521 19 HOH HOH . J 4 HOH B 22 522 27 HOH HOH . J 4 HOH B 23 523 106 HOH HOH . J 4 HOH B 24 524 163 HOH HOH . J 4 HOH B 25 525 21 HOH HOH . J 4 HOH B 26 526 29 HOH HOH . J 4 HOH B 27 527 28 HOH HOH . J 4 HOH B 28 528 169 HOH HOH . J 4 HOH B 29 529 85 HOH HOH . J 4 HOH B 30 530 100 HOH HOH . J 4 HOH B 31 531 14 HOH HOH . J 4 HOH B 32 532 30 HOH HOH . J 4 HOH B 33 533 35 HOH HOH . J 4 HOH B 34 534 162 HOH HOH . J 4 HOH B 35 535 149 HOH HOH . J 4 HOH B 36 536 210 HOH HOH . J 4 HOH B 37 537 25 HOH HOH . J 4 HOH B 38 538 31 HOH HOH . J 4 HOH B 39 539 38 HOH HOH . J 4 HOH B 40 540 34 HOH HOH . J 4 HOH B 41 541 154 HOH HOH . J 4 HOH B 42 542 41 HOH HOH . J 4 HOH B 43 543 39 HOH HOH . J 4 HOH B 44 544 207 HOH HOH . J 4 HOH B 45 545 186 HOH HOH . J 4 HOH B 46 546 147 HOH HOH . J 4 HOH B 47 547 119 HOH HOH . J 4 HOH B 48 548 131 HOH HOH . J 4 HOH B 49 549 32 HOH HOH . J 4 HOH B 50 550 126 HOH HOH . J 4 HOH B 51 551 37 HOH HOH . J 4 HOH B 52 552 145 HOH HOH . J 4 HOH B 53 553 166 HOH HOH . J 4 HOH B 54 554 43 HOH HOH . J 4 HOH B 55 555 40 HOH HOH . J 4 HOH B 56 556 42 HOH HOH . J 4 HOH B 57 557 209 HOH HOH . J 4 HOH B 58 558 190 HOH HOH . J 4 HOH B 59 559 201 HOH HOH . J 4 HOH B 60 560 205 HOH HOH . J 4 HOH B 61 561 204 HOH HOH . J 4 HOH B 62 562 194 HOH HOH . K 4 HOH C 1 501 121 HOH HOH . K 4 HOH C 2 502 214 HOH HOH . K 4 HOH C 3 503 114 HOH HOH . K 4 HOH C 4 504 140 HOH HOH . K 4 HOH C 5 505 136 HOH HOH . K 4 HOH C 6 506 47 HOH HOH . K 4 HOH C 7 507 177 HOH HOH . K 4 HOH C 8 508 44 HOH HOH . K 4 HOH C 9 509 49 HOH HOH . K 4 HOH C 10 510 215 HOH HOH . K 4 HOH C 11 511 157 HOH HOH . K 4 HOH C 12 512 139 HOH HOH . K 4 HOH C 13 513 102 HOH HOH . K 4 HOH C 14 514 52 HOH HOH . K 4 HOH C 15 515 55 HOH HOH . K 4 HOH C 16 516 103 HOH HOH . K 4 HOH C 17 517 165 HOH HOH . K 4 HOH C 18 518 159 HOH HOH . K 4 HOH C 19 519 129 HOH HOH . K 4 HOH C 20 520 50 HOH HOH . K 4 HOH C 21 521 46 HOH HOH . K 4 HOH C 22 522 133 HOH HOH . K 4 HOH C 23 523 53 HOH HOH . K 4 HOH C 24 524 176 HOH HOH . K 4 HOH C 25 525 51 HOH HOH . K 4 HOH C 26 526 45 HOH HOH . K 4 HOH C 27 527 48 HOH HOH . K 4 HOH C 28 528 54 HOH HOH . K 4 HOH C 29 529 58 HOH HOH . K 4 HOH C 30 530 59 HOH HOH . K 4 HOH C 31 531 213 HOH HOH . K 4 HOH C 32 532 57 HOH HOH . K 4 HOH C 33 533 101 HOH HOH . K 4 HOH C 34 534 141 HOH HOH . K 4 HOH C 35 535 128 HOH HOH . K 4 HOH C 36 536 98 HOH HOH . K 4 HOH C 37 537 125 HOH HOH . K 4 HOH C 38 538 130 HOH HOH . K 4 HOH C 39 539 62 HOH HOH . K 4 HOH C 40 540 112 HOH HOH . K 4 HOH C 41 541 60 HOH HOH . K 4 HOH C 42 542 184 HOH HOH . K 4 HOH C 43 543 134 HOH HOH . K 4 HOH C 44 544 216 HOH HOH . K 4 HOH C 45 545 217 HOH HOH . K 4 HOH C 46 546 208 HOH HOH . K 4 HOH C 47 547 227 HOH HOH . K 4 HOH C 48 548 222 HOH HOH . L 4 HOH D 1 501 123 HOH HOH . L 4 HOH D 2 502 160 HOH HOH . L 4 HOH D 3 503 66 HOH HOH . L 4 HOH D 4 504 146 HOH HOH . L 4 HOH D 5 505 137 HOH HOH . L 4 HOH D 6 506 70 HOH HOH . L 4 HOH D 7 507 122 HOH HOH . L 4 HOH D 8 508 118 HOH HOH . L 4 HOH D 9 509 73 HOH HOH . L 4 HOH D 10 510 83 HOH HOH . L 4 HOH D 11 511 180 HOH HOH . L 4 HOH D 12 512 84 HOH HOH . L 4 HOH D 13 513 88 HOH HOH . L 4 HOH D 14 514 72 HOH HOH . L 4 HOH D 15 515 77 HOH HOH . L 4 HOH D 16 516 142 HOH HOH . L 4 HOH D 17 517 76 HOH HOH . L 4 HOH D 18 518 74 HOH HOH . L 4 HOH D 19 519 64 HOH HOH . L 4 HOH D 20 520 75 HOH HOH . L 4 HOH D 21 521 67 HOH HOH . L 4 HOH D 22 522 93 HOH HOH . L 4 HOH D 23 523 127 HOH HOH . L 4 HOH D 24 524 79 HOH HOH . L 4 HOH D 25 525 167 HOH HOH . L 4 HOH D 26 526 78 HOH HOH . L 4 HOH D 27 527 82 HOH HOH . L 4 HOH D 28 528 120 HOH HOH . L 4 HOH D 29 529 185 HOH HOH . L 4 HOH D 30 530 71 HOH HOH . L 4 HOH D 31 531 26 HOH HOH . L 4 HOH D 32 532 148 HOH HOH . L 4 HOH D 33 533 36 HOH HOH . L 4 HOH D 34 534 56 HOH HOH . L 4 HOH D 35 535 115 HOH HOH . L 4 HOH D 36 536 111 HOH HOH . L 4 HOH D 37 537 80 HOH HOH . L 4 HOH D 38 538 81 HOH HOH . L 4 HOH D 39 539 175 HOH HOH . L 4 HOH D 40 540 33 HOH HOH . L 4 HOH D 41 541 91 HOH HOH . L 4 HOH D 42 542 90 HOH HOH . L 4 HOH D 43 543 68 HOH HOH . L 4 HOH D 44 544 113 HOH HOH . L 4 HOH D 45 545 224 HOH HOH . L 4 HOH D 46 546 92 HOH HOH . L 4 HOH D 47 547 89 HOH HOH . L 4 HOH D 48 548 178 HOH HOH . L 4 HOH D 49 549 94 HOH HOH . L 4 HOH D 50 550 219 HOH HOH . L 4 HOH D 51 551 86 HOH HOH . L 4 HOH D 52 552 226 HOH HOH . L 4 HOH D 53 553 220 HOH HOH . L 4 HOH D 54 554 95 HOH HOH . L 4 HOH D 55 555 156 HOH HOH . L 4 HOH D 56 556 223 HOH HOH . L 4 HOH D 57 557 221 HOH HOH . L 4 HOH D 58 558 96 HOH HOH . L 4 HOH D 59 559 212 HOH HOH . L 4 HOH D 60 560 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . H 2 29.867 -5.609 62.198 1 43.48 ? N ASP 401 D 1 HETATM 2 C CA ASP . . . H 2 30.882 -6.271 62.989 1 38.6 ? CA ASP 401 D 1 HETATM 3 C C ASP . . . H 2 32.088 -5.466 62.643 1 39.17 ? C ASP 401 D 1 HETATM 4 O O ASP . . . H 2 31.99 -4.648 61.743 1 45.11 ? O ASP 401 D 1 HETATM 5 C CB ASP . . . H 2 30.998 -7.749 62.598 1 35.14 ? CB ASP 401 D 1 HETATM 6 C CG ASP . . . H 2 31.976 -8.509 63.42 1 36.69 ? CG ASP 401 D 1 HETATM 7 O OD1 ASP . . . H 2 31.779 -9.72 63.592 1 35.97 ? OD1 ASP 401 D 1 HETATM 8 O OD2 ASP . . . H 2 32.987 -7.95 63.849 1 52.68 ? OD2 ASP 401 D 1 HETATM 9 O OXT ASP . . . H 2 33.147 -5.543 63.211 1 43.35 ? OXT ASP 401 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #