data_6V5G # _model_server_result.job_id SELb0hpecUj5eoZZrGKGYA _model_server_result.datetime_utc '2025-06-20 10:32:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6V5G # _exptl.entry_id 6V5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6V5G _cell.length_a 38.178 _cell.length_b 38.178 _cell.length_c 102.772 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1,2,4 B,E 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 19.089 -33.063118 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 38.178 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLU 2 A GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C ACE 1 B ACE 0 1_555 B N GLU 2 B GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6V5G _atom_sites.fract_transf_matrix[1][1] 0.026193 _atom_sites.fract_transf_matrix[1][2] 0.015123 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PE A 1 101 1 1PE 1PE . D 3 HOH A 1 201 91 HOH HOH . D 3 HOH A 2 202 14 HOH HOH . D 3 HOH A 3 203 40 HOH HOH . D 3 HOH A 4 204 67 HOH HOH . D 3 HOH A 5 205 5 HOH HOH . D 3 HOH A 6 206 79 HOH HOH . D 3 HOH A 7 207 29 HOH HOH . D 3 HOH A 8 208 15 HOH HOH . D 3 HOH A 9 209 2 HOH HOH . D 3 HOH A 10 210 24 HOH HOH . D 3 HOH A 11 211 12 HOH HOH . D 3 HOH A 12 212 3 HOH HOH . D 3 HOH A 13 213 45 HOH HOH . D 3 HOH A 14 214 51 HOH HOH . D 3 HOH A 15 215 55 HOH HOH . D 3 HOH A 16 216 64 HOH HOH . D 3 HOH A 17 217 68 HOH HOH . D 3 HOH A 18 218 6 HOH HOH . D 3 HOH A 19 219 32 HOH HOH . D 3 HOH A 20 220 13 HOH HOH . D 3 HOH A 21 221 53 HOH HOH . D 3 HOH A 22 222 72 HOH HOH . D 3 HOH A 23 223 27 HOH HOH . D 3 HOH A 24 224 46 HOH HOH . D 3 HOH A 25 225 21 HOH HOH . D 3 HOH A 26 226 63 HOH HOH . D 3 HOH A 27 227 16 HOH HOH . D 3 HOH A 28 228 81 HOH HOH . D 3 HOH A 29 229 28 HOH HOH . D 3 HOH A 30 230 73 HOH HOH . D 3 HOH A 31 231 76 HOH HOH . D 3 HOH A 32 232 75 HOH HOH . D 3 HOH A 33 233 60 HOH HOH . D 3 HOH A 34 234 71 HOH HOH . D 3 HOH A 35 235 44 HOH HOH . D 3 HOH A 36 236 86 HOH HOH . D 3 HOH A 37 237 65 HOH HOH . D 3 HOH A 38 238 61 HOH HOH . D 3 HOH A 39 239 78 HOH HOH . D 3 HOH A 40 240 58 HOH HOH . D 3 HOH A 41 241 41 HOH HOH . D 3 HOH A 42 242 83 HOH HOH . D 3 HOH A 43 243 80 HOH HOH . D 3 HOH A 44 244 70 HOH HOH . D 3 HOH A 45 245 82 HOH HOH . D 3 HOH A 46 246 37 HOH HOH . D 3 HOH A 47 247 22 HOH HOH . E 3 HOH B 1 101 90 HOH HOH . E 3 HOH B 2 102 87 HOH HOH . E 3 HOH B 3 103 19 HOH HOH . E 3 HOH B 4 104 11 HOH HOH . E 3 HOH B 5 105 85 HOH HOH . E 3 HOH B 6 106 7 HOH HOH . E 3 HOH B 7 107 31 HOH HOH . E 3 HOH B 8 108 36 HOH HOH . E 3 HOH B 9 109 4 HOH HOH . E 3 HOH B 10 110 10 HOH HOH . E 3 HOH B 11 111 54 HOH HOH . E 3 HOH B 12 112 1 HOH HOH . E 3 HOH B 13 113 8 HOH HOH . E 3 HOH B 14 114 23 HOH HOH . E 3 HOH B 15 115 59 HOH HOH . E 3 HOH B 16 116 66 HOH HOH . E 3 HOH B 17 117 9 HOH HOH . E 3 HOH B 18 118 88 HOH HOH . E 3 HOH B 19 119 17 HOH HOH . E 3 HOH B 20 120 62 HOH HOH . E 3 HOH B 21 121 33 HOH HOH . E 3 HOH B 22 122 20 HOH HOH . E 3 HOH B 23 123 18 HOH HOH . E 3 HOH B 24 124 77 HOH HOH . E 3 HOH B 25 125 47 HOH HOH . E 3 HOH B 26 126 30 HOH HOH . E 3 HOH B 27 127 49 HOH HOH . E 3 HOH B 28 128 48 HOH HOH . E 3 HOH B 29 129 25 HOH HOH . E 3 HOH B 30 130 35 HOH HOH . E 3 HOH B 31 131 74 HOH HOH . E 3 HOH B 32 132 69 HOH HOH . E 3 HOH B 33 133 84 HOH HOH . E 3 HOH B 34 134 92 HOH HOH . E 3 HOH B 35 135 56 HOH HOH . E 3 HOH B 36 136 50 HOH HOH . E 3 HOH B 37 137 43 HOH HOH . E 3 HOH B 38 138 42 HOH HOH . E 3 HOH B 39 139 57 HOH HOH . E 3 HOH B 40 140 89 HOH HOH . E 3 HOH B 41 141 39 HOH HOH . E 3 HOH B 42 142 26 HOH HOH . E 3 HOH B 43 143 34 HOH HOH . E 3 HOH B 44 144 38 HOH HOH . E 3 HOH B 45 145 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . C 2 15.437 0.963 -19.593 1 30.62 ? OH2 1PE 101 A 1 HETATM 2 C C12 1PE . . . C 2 14.032 1.001 -19.532 1 30.02 ? C12 1PE 101 A 1 HETATM 3 C C22 1PE . . . C 2 13.525 0.435 -20.884 1 29.11 ? C22 1PE 101 A 1 HETATM 4 O OH3 1PE . . . C 2 13.564 -0.992 -20.816 1 20.57 ? OH3 1PE 101 A 1 HETATM 5 C C13 1PE . . . C 2 11.273 -1.661 -21.196 1 21.66 ? C13 1PE 101 A 1 HETATM 6 C C23 1PE . . . C 2 12.694 -1.573 -21.789 1 18.36 ? C23 1PE 101 A 1 HETATM 7 O OH4 1PE . . . C 2 11.263 -2.614 -20.137 1 16.81 ? OH4 1PE 101 A 1 HETATM 8 C C14 1PE . . . C 2 9.748 -3.395 -18.404 1 18.41 ? C14 1PE 101 A 1 HETATM 9 C C24 1PE . . . C 2 9.948 -3.056 -19.891 1 20.41 ? C24 1PE 101 A 1 HETATM 10 O OH5 1PE . . . C 2 10.949 -3.512 -17.713 1 20.63 ? OH5 1PE 101 A 1 HETATM 11 C C15 1PE . . . C 2 11.751 -3.871 -15.444 1 21.02 ? C15 1PE 101 A 1 HETATM 12 C C25 1PE . . . C 2 10.811 -4.366 -16.561 1 16.12 ? C25 1PE 101 A 1 HETATM 13 O OH6 1PE . . . C 2 11.21 -2.675 -14.93 1 17.27 ? OH6 1PE 101 A 1 HETATM 14 C C16 1PE . . . C 2 11.328 -0.804 -13.464 1 19.03 ? C16 1PE 101 A 1 HETATM 15 C C26 1PE . . . C 2 11.982 -2.137 -13.865 1 19.71 ? C26 1PE 101 A 1 HETATM 16 O OH7 1PE . . . C 2 12.161 0.203 -13.97 1 31.67 ? OH7 1PE 101 A 1 HETATM 17 H HO2 1PE . . . C 2 15.724 1.382 -18.907 1 36.67 ? HO2 1PE 101 A 1 HETATM 18 H H121 1PE . . . C 2 13.669 0.522 -18.776 1 35.94 ? H121 1PE 101 A 1 HETATM 19 H H122 1PE . . . C 2 13.709 1.915 -19.444 1 35.94 ? H122 1PE 101 A 1 HETATM 20 H H221 1PE . . . C 2 12.622 0.758 -21.036 1 34.86 ? H221 1PE 101 A 1 HETATM 21 H H222 1PE . . . C 2 14.058 0.768 -21.612 1 34.86 ? H222 1PE 101 A 1 HETATM 22 H H131 1PE . . . C 2 11.024 -0.771 -20.876 1 25.91 ? H131 1PE 101 A 1 HETATM 23 H H132 1PE . . . C 2 10.614 -1.877 -21.876 1 25.91 ? H132 1PE 101 A 1 HETATM 24 H H231 1PE . . . C 2 12.692 -1.073 -22.616 1 21.96 ? H231 1PE 101 A 1 HETATM 25 H H232 1PE . . . C 2 12.974 -2.482 -22.029 1 21.96 ? H232 1PE 101 A 1 HETATM 26 H H141 1PE . . . C 2 9.237 -2.681 -18.027 1 22.01 ? H141 1PE 101 A 1 HETATM 27 H H142 1PE . . . C 2 9.186 -4.176 -18.296 1 22.01 ? H142 1PE 101 A 1 HETATM 28 H H241 1PE . . . C 2 9.74 -3.836 -20.437 1 24.41 ? H241 1PE 101 A 1 HETATM 29 H H242 1PE . . . C 2 9.312 -2.383 -20.138 1 24.41 ? H242 1PE 101 A 1 HETATM 30 H H151 1PE . . . C 2 11.811 -4.564 -14.758 1 25.14 ? H151 1PE 101 A 1 HETATM 31 H H152 1PE . . . C 2 12.654 -3.736 -15.765 1 25.14 ? H152 1PE 101 A 1 HETATM 32 H H251 1PE . . . C 2 9.903 -4.39 -16.248 1 19.26 ? H251 1PE 101 A 1 HETATM 33 H H252 1PE . . . C 2 11.053 -5.285 -16.758 1 19.26 ? H252 1PE 101 A 1 HETATM 34 H H161 1PE . . . C 2 11.278 -0.762 -12.487 1 22.76 ? H161 1PE 101 A 1 HETATM 35 H H162 1PE . . . C 2 10.419 -0.735 -13.773 1 22.76 ? H162 1PE 101 A 1 HETATM 36 H H261 1PE . . . C 2 12.022 -2.735 -13.103 1 23.57 ? H261 1PE 101 A 1 HETATM 37 H H262 1PE . . . C 2 12.898 -1.977 -14.137 1 23.57 ? H262 1PE 101 A 1 HETATM 38 H HO7 1PE . . . C 2 11.787 0.516 -14.667 1 37.92 ? HO7 1PE 101 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 38 #