data_6V5I
#
_model_server_result.job_id            YADArpRGvUajUFoFruFl7Q 
_model_server_result.datetime_utc      '2025-08-04 01:59:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v5i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    6V5I 
#
_exptl.entry_id    6V5I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.278 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6V5I 
_cell.length_a            37.86 
_cell.length_b            37.86 
_cell.length_c            105.847 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V5I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1,2,4 
B,C,E 2 1,3,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 18.93 -32.787722 0 
3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 37.86 0 0 
5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLU 2 A GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B C ACE 1 B ACE 0 1_555 B N GLU 2 B GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C10 H22 O6' 
_chem_comp.formula_weight    238.278 
_chem_comp.id                1PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PEG400 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH2 C12 1PE sing 1 n n 
OH2 HO2 1PE sing 2 n n 
C12 C22 1PE sing 3 n n 
C12 H121 1PE sing 4 n n 
C12 H122 1PE sing 5 n n 
C22 OH3 1PE sing 6 n n 
C22 H221 1PE sing 7 n n 
C22 H222 1PE sing 8 n n 
OH3 C23 1PE sing 9 n n 
C13 C23 1PE sing 10 n n 
C13 OH4 1PE sing 11 n n 
C13 H131 1PE sing 12 n n 
C13 H132 1PE sing 13 n n 
C23 H231 1PE sing 14 n n 
C23 H232 1PE sing 15 n n 
OH4 C24 1PE sing 16 n n 
C14 C24 1PE sing 17 n n 
C14 OH5 1PE sing 18 n n 
C14 H141 1PE sing 19 n n 
C14 H142 1PE sing 20 n n 
C24 H241 1PE sing 21 n n 
C24 H242 1PE sing 22 n n 
OH5 C25 1PE sing 23 n n 
C15 C25 1PE sing 24 n n 
C15 OH6 1PE sing 25 n n 
C15 H151 1PE sing 26 n n 
C15 H152 1PE sing 27 n n 
C25 H251 1PE sing 28 n n 
C25 H252 1PE sing 29 n n 
OH6 C26 1PE sing 30 n n 
C16 C26 1PE sing 31 n n 
C16 OH7 1PE sing 32 n n 
C16 H161 1PE sing 33 n n 
C16 H162 1PE sing 34 n n 
C26 H261 1PE sing 35 n n 
C26 H262 1PE sing 36 n n 
OH7 HO7 1PE sing 37 n n 
#
_atom_sites.entry_id                     6V5I 
_atom_sites.fract_transf_matrix[1][1]    0.026413 
_atom_sites.fract_transf_matrix[1][2]    0.01525 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009448 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1PE B 1 101 1 1PE 1PE . 
D 3 HOH A 1 101 64 HOH HOH . 
D 3 HOH A 2 102 48 HOH HOH . 
D 3 HOH A 3 103 22 HOH HOH . 
D 3 HOH A 4 104 18 HOH HOH . 
D 3 HOH A 5 105 26 HOH HOH . 
D 3 HOH A 6 106 82 HOH HOH . 
D 3 HOH A 7 107 33 HOH HOH . 
D 3 HOH A 8 108 74 HOH HOH . 
D 3 HOH A 9 109 20 HOH HOH . 
D 3 HOH A 10 110 42 HOH HOH . 
D 3 HOH A 11 111 6 HOH HOH . 
D 3 HOH A 12 112 4 HOH HOH . 
D 3 HOH A 13 113 3 HOH HOH . 
D 3 HOH A 14 114 21 HOH HOH . 
D 3 HOH A 15 115 86 HOH HOH . 
D 3 HOH A 16 116 2 HOH HOH . 
D 3 HOH A 17 117 47 HOH HOH . 
D 3 HOH A 18 118 72 HOH HOH . 
D 3 HOH A 19 119 29 HOH HOH . 
D 3 HOH A 20 120 69 HOH HOH . 
D 3 HOH A 21 121 75 HOH HOH . 
D 3 HOH A 22 122 39 HOH HOH . 
D 3 HOH A 23 123 85 HOH HOH . 
D 3 HOH A 24 124 40 HOH HOH . 
D 3 HOH A 25 125 34 HOH HOH . 
D 3 HOH A 26 126 67 HOH HOH . 
D 3 HOH A 27 127 49 HOH HOH . 
D 3 HOH A 28 128 66 HOH HOH . 
D 3 HOH A 29 129 54 HOH HOH . 
D 3 HOH A 30 130 70 HOH HOH . 
D 3 HOH A 31 131 7 HOH HOH . 
D 3 HOH A 32 132 30 HOH HOH . 
D 3 HOH A 33 133 83 HOH HOH . 
D 3 HOH A 34 134 16 HOH HOH . 
D 3 HOH A 35 135 62 HOH HOH . 
D 3 HOH A 36 136 61 HOH HOH . 
D 3 HOH A 37 137 28 HOH HOH . 
D 3 HOH A 38 138 5 HOH HOH . 
D 3 HOH A 39 139 25 HOH HOH . 
D 3 HOH A 40 140 90 HOH HOH . 
D 3 HOH A 41 141 88 HOH HOH . 
E 3 HOH B 1 201 76 HOH HOH . 
E 3 HOH B 2 202 71 HOH HOH . 
E 3 HOH B 3 203 65 HOH HOH . 
E 3 HOH B 4 204 11 HOH HOH . 
E 3 HOH B 5 205 27 HOH HOH . 
E 3 HOH B 6 206 14 HOH HOH . 
E 3 HOH B 7 207 9 HOH HOH . 
E 3 HOH B 8 208 36 HOH HOH . 
E 3 HOH B 9 209 59 HOH HOH . 
E 3 HOH B 10 210 52 HOH HOH . 
E 3 HOH B 11 211 1 HOH HOH . 
E 3 HOH B 12 212 37 HOH HOH . 
E 3 HOH B 13 213 38 HOH HOH . 
E 3 HOH B 14 214 10 HOH HOH . 
E 3 HOH B 15 215 8 HOH HOH . 
E 3 HOH B 16 216 73 HOH HOH . 
E 3 HOH B 17 217 57 HOH HOH . 
E 3 HOH B 18 218 15 HOH HOH . 
E 3 HOH B 19 219 91 HOH HOH . 
E 3 HOH B 20 220 12 HOH HOH . 
E 3 HOH B 21 221 13 HOH HOH . 
E 3 HOH B 22 222 19 HOH HOH . 
E 3 HOH B 23 223 31 HOH HOH . 
E 3 HOH B 24 224 17 HOH HOH . 
E 3 HOH B 25 225 78 HOH HOH . 
E 3 HOH B 26 226 24 HOH HOH . 
E 3 HOH B 27 227 58 HOH HOH . 
E 3 HOH B 28 228 79 HOH HOH . 
E 3 HOH B 29 229 56 HOH HOH . 
E 3 HOH B 30 230 35 HOH HOH . 
E 3 HOH B 31 231 41 HOH HOH . 
E 3 HOH B 32 232 81 HOH HOH . 
E 3 HOH B 33 233 84 HOH HOH . 
E 3 HOH B 34 234 45 HOH HOH . 
E 3 HOH B 35 235 80 HOH HOH . 
E 3 HOH B 36 236 77 HOH HOH . 
E 3 HOH B 37 237 44 HOH HOH . 
E 3 HOH B 38 238 23 HOH HOH . 
E 3 HOH B 39 239 43 HOH HOH . 
E 3 HOH B 40 240 92 HOH HOH . 
E 3 HOH B 41 241 32 HOH HOH . 
E 3 HOH B 42 242 51 HOH HOH . 
E 3 HOH B 43 243 89 HOH HOH . 
E 3 HOH B 44 244 60 HOH HOH . 
E 3 HOH B 45 245 53 HOH HOH . 
E 3 HOH B 46 246 55 HOH HOH . 
E 3 HOH B 47 247 46 HOH HOH . 
E 3 HOH B 48 248 68 HOH HOH . 
E 3 HOH B 49 249 63 HOH HOH . 
E 3 HOH B 50 250 50 HOH HOH . 
E 3 HOH B 51 251 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH2 1PE . . . C 2 12.533 3.425 -16.27 1 42.15 ? OH2 1PE 101 B 1 
HETATM 2 C C12 1PE . . . C 2 12.103 2.372 -15.445 1 34 ? C12 1PE 101 B 1 
HETATM 3 C C22 1PE . . . C 2 13.378 1.63 -14.949 1 38.59 ? C22 1PE 101 B 1 
HETATM 4 O OH3 1PE . . . C 2 13.015 0.67 -13.931 1 37 ? OH3 1PE 101 B 1 
HETATM 5 C C13 1PE . . . C 2 11.499 -1.059 -13.194 1 25.92 ? C13 1PE 101 B 1 
HETATM 6 C C23 1PE . . . C 2 11.704 0.137 -14.124 1 24.47 ? C23 1PE 101 B 1 
HETATM 7 O OH4 1PE . . . C 2 12.003 -2.207 -13.842 1 33.78 ? OH4 1PE 101 B 1 
HETATM 8 C C14 1PE . . . C 2 11.63 -3.656 -15.699 1 21.93 ? C14 1PE 101 B 1 
HETATM 9 C C24 1PE . . . C 2 11.005 -2.808 -14.625 1 19.55 ? C24 1PE 101 B 1 
HETATM 10 O OH5 1PE . . . C 2 10.649 -3.98 -16.672 1 26.97 ? OH5 1PE 101 B 1 
HETATM 11 C C15 1PE . . . C 2 9.938 -3.592 -18.95 1 19.66 ? C15 1PE 101 B 1 
HETATM 12 C C25 1PE . . . C 2 10.575 -2.989 -17.683 1 18.37 ? C25 1PE 101 B 1 
HETATM 13 O OH6 1PE . . . C 2 10.061 -2.658 -20.037 1 22.8 ? OH6 1PE 101 B 1 
HETATM 14 C C16 1PE . . . C 2 11.597 -1.521 -21.533 1 25.11 ? C16 1PE 101 B 1 
HETATM 15 C C26 1PE . . . C 2 11.372 -2.114 -20.118 1 22.55 ? C26 1PE 101 B 1 
HETATM 16 O OH7 1PE . . . C 2 13.003 -1.398 -21.674 1 26.49 ? OH7 1PE 101 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#