data_6V5L # _model_server_result.job_id AfnHA1_QyJSP-XRxD8zcuA _model_server_result.datetime_utc '2025-01-02 22:06:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6V5L # _exptl.entry_id 6V5L _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 308.335 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-[2-(1H-indole-3-carbonyl)hydrazinyl]-2-phenylacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 N4 O2' _chem_comp.formula_weight 308.335 _chem_comp.id QPD _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-[2-(1H-indole-3-carbonyl)hydrazinyl]-2-phenylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 QPD doub 320 n y C17 C18 QPD sing 321 n y C16 C15 QPD sing 322 n y C18 C19 QPD doub 323 n y C15 C14 QPD doub 324 n y C19 C14 QPD sing 325 n y C14 C11 QPD sing 326 n n N13 C12 QPD sing 327 n n C11 C12 QPD sing 328 n n C11 N10 QPD sing 329 n n C12 O2 QPD doub 330 n n N10 N9 QPD sing 331 n n N9 C8 QPD sing 332 n n O1 C8 QPD doub 333 n n C8 C3 QPD sing 334 n n C3 C2 QPD doub 335 n y C3 C4A QPD sing 336 n y C2 N1 QPD sing 337 n y C4A C4 QPD doub 338 n y C4A C7A QPD sing 339 n y C4 C5 QPD sing 340 n y N1 C7A QPD sing 341 n y C7A C7 QPD doub 342 n y C5 C6 QPD doub 343 n y C7 C6 QPD sing 344 n y C5 H5 QPD sing 345 n n C16 H16 QPD sing 346 n n C4 H4 QPD sing 347 n n N1 H12 QPD sing 348 n n C2 H2 QPD sing 349 n n C7 H7 QPD sing 350 n n C18 H18 QPD sing 351 n n C6 H6 QPD sing 352 n n C11 H11 QPD sing 353 n n C15 H15 QPD sing 354 n n C17 H17 QPD sing 355 n n C19 H19 QPD sing 356 n n N9 H9 QPD sing 357 n n N10 H10 QPD sing 358 n n N13 H9L QPD sing 359 n n N13 H13 QPD sing 360 n n # _atom_sites.entry_id 6V5L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 202 MG MG . D 4 QPD A 1 203 300 QPD E22 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 QPD . . . D 4 10.412 1.4 -4.879 1 0.58 ? C5 QPD 203 A 1 HETATM 2 O O2 QPD . . . D 4 9.019 5.904 -10.992 1 1.67 ? O2 QPD 203 A 1 HETATM 3 C C16 QPD . . . D 4 10.159 2.269 -14.444 1 1.69 ? C16 QPD 203 A 1 HETATM 4 C C14 QPD . . . D 4 10.538 3.514 -12.416 1 0.73 ? C14 QPD 203 A 1 HETATM 5 C C8 QPD . . . D 4 10.83 3.776 -8.481 1 0.5 ? C8 QPD 203 A 1 HETATM 6 C C4 QPD . . . D 4 10.767 2.089 -6.032 1 0.55 ? C4 QPD 203 A 1 HETATM 7 N N1 QPD . . . D 4 9.146 5.1 -5.873 1 0.28 ? N1 QPD 203 A 1 HETATM 8 C C3 QPD . . . D 4 10.477 4.161 -7.257 1 0.44 ? C3 QPD 203 A 1 HETATM 9 O O1 QPD . . . D 4 11.052 2.593 -8.733 1 0.68 ? O1 QPD 203 A 1 HETATM 10 C C2 QPD . . . D 4 9.781 5.27 -7.028 1 0.36 ? C2 QPD 203 A 1 HETATM 11 C C7 QPD . . . D 4 9.074 3.284 -4.278 1 0.37 ? C7 QPD 203 A 1 HETATM 12 C C12 QPD . . . D 4 8.934 4.68 -11.094 1 1.47 ? C12 QPD 203 A 1 HETATM 13 C C18 QPD . . . D 4 12.15 3.601 -14.203 1 1.59 ? C18 QPD 203 A 1 HETATM 14 C C6 QPD . . . D 4 9.55 2.013 -3.98 1 0.5 ? C6 QPD 203 A 1 HETATM 15 C C11 QPD . . . D 4 10.183 3.797 -11.103 1 0.91 ? C11 QPD 203 A 1 HETATM 16 C C15 QPD . . . D 4 9.745 2.662 -13.175 1 1.28 ? C15 QPD 203 A 1 HETATM 17 C C17 QPD . . . D 4 11.362 2.737 -14.956 1 1.84 ? C17 QPD 203 A 1 HETATM 18 C C19 QPD . . . D 4 11.736 3.991 -12.936 1 0.95 ? C19 QPD 203 A 1 HETATM 19 C C4A QPD . . . D 4 10.277 3.308 -6.258 1 0.4 ? C4A QPD 203 A 1 HETATM 20 C C7A QPD . . . D 4 9.446 3.895 -5.399 1 0.29 ? C7A QPD 203 A 1 HETATM 21 N N9 QPD . . . D 4 10.98 4.773 -9.365 1 0.6 ? N9 QPD 203 A 1 HETATM 22 N N10 QPD . . . D 4 11.278 4.492 -10.41 1 0.74 ? N10 QPD 203 A 1 HETATM 23 N N13 QPD . . . D 4 7.782 4.021 -11.184 1 2.26 ? N13 QPD 203 A 1 HETATM 24 H H5 QPD . . . D 4 10.782 0.389 -4.697 1 0.72 ? H5 QPD 203 A 1 HETATM 25 H H16 QPD . . . D 4 9.555 1.569 -15.023 1 2.18 ? H16 QPD 203 A 1 HETATM 26 H H4 QPD . . . D 4 11.459 1.639 -6.745 1 0.71 ? H4 QPD 203 A 1 HETATM 27 H H12 QPD . . . D 4 8.553 5.772 -5.429 1 0.36 ? H12 QPD 203 A 1 HETATM 28 H H2 QPD . . . D 4 9.746 6.154 -7.665 1 0.47 ? H2 QPD 203 A 1 HETATM 29 H H7 QPD . . . D 4 8.398 3.786 -3.586 1 0.43 ? H7 QPD 203 A 1 HETATM 30 H H18 QPD . . . D 4 13.095 3.966 -14.604 1 2.1 ? H18 QPD 203 A 1 HETATM 31 H H6 QPD . . . D 4 9.274 1.519 -3.05 1 0.61 ? H6 QPD 203 A 1 HETATM 32 H H11 QPD . . . D 4 9.96 2.865 -10.584 1 1.54 ? H11 QPD 203 A 1 HETATM 33 H H15 QPD . . . D 4 8.795 2.304 -12.776 1 1.68 ? H15 QPD 203 A 1 HETATM 34 H H17 QPD . . . D 4 11.687 2.429 -15.948 1 2.39 ? H17 QPD 203 A 1 HETATM 35 H H19 QPD . . . D 4 12.348 4.68 -12.353 1 1.12 ? H19 QPD 203 A 1 HETATM 36 H H9 QPD . . . D 4 10.844 5.735 -9.127 1 0.7 ? H9 QPD 203 A 1 HETATM 37 H H10 QPD . . . D 4 11.54 5.311 -10.919 1 0.9 ? H10 QPD 203 A 1 HETATM 38 H H9L QPD . . . D 4 7.779 3.021 -11.238 1 2.41 ? H9L QPD 203 A 1 HETATM 39 H H13 QPD . . . D 4 6.918 4.527 -11.186 1 2.87 ? H13 QPD 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 2340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #