data_6V5T
#
_model_server_result.job_id            K9IXwOPv9TE-mpW6RiGesA 
_model_server_result.datetime_utc      '2024-11-21 17:14:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6V5T 
#
_exptl.entry_id    6V5T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.42 
_cell.angle_gamma         90 
_cell.entry_id            6V5T 
_cell.length_a            44.545 
_cell.length_b            58.887 
_cell.length_c            52.455 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 E CYS 1 1_555 A SG CYS 150 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf2 A SG CYS 59 E CYS 42 1_555 A SG CYS 75 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf3 A SG CYS 204 E CYS 168 1_555 A SG CYS 218 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 232 E CYS 191 1_555 A SG CYS 262 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
covale ? covale1 A C PRO 44 E PRO 28 1_555 A N FTR 45 E FTR 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C FTR 45 E FTR 29 1_555 A N GLN 46 E GLN 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 A C ARG 67 E ARG 50 1_555 A N FTR 68 E FTR 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale4 A C FTR 68 E FTR 51 1_555 A N VAL 69 E VAL 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C PRO 80 E PRO 60 1_555 A N FTR 81 E FTR 60 1_555 C ? ? D ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C FTR 81 E FTR 60 1_555 A N ASP 82 E ASP 60 1_555 D ? ? E ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 A C ASN 122 E ASN 95 1_555 A N FTR 123 E FTR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale8 A C FTR 123 E FTR 96 1_555 A N ARG 124 E ARG 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale9 A C GLY 171 E GLY 140 1_555 A N FTR 172 E FTR 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 A C FTR 172 E FTR 141 1_555 A N GLY 173 E GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale11 A C THR 178 E THR 147 1_555 A N FTR 179 E FTR 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale12 A C FTR 179 E FTR 148 1_555 A N THR 180 E THR 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale13 A C ARG 249 E ARG 206 1_555 A N FTR 250 E FTR 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale14 A C FTR 250 E FTR 207 1_555 A N TYR 251 E TYR 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale15 A C SER 257 E SER 214 1_555 A N FTR 258 E FTR 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 A C FTR 258 E FTR 215 1_555 A N GLY 259 E GLY 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale17 A C LYS 279 E LYS 236 1_555 A N FTR 280 E FTR 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale18 A C FTR 280 E FTR 237 1_555 A N ILE 281 E ILE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     6V5T 
_atom_sites.fract_transf_matrix[1][1]    0.022449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003324 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019272 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL E 1 301 301 GOL GOL . 
C 3 SO4 E 1 302 302 SO4 SO4 . 
D 4 HOH E 1 401 6 HOH HOH . 
D 4 HOH E 2 402 96 HOH HOH . 
D 4 HOH E 3 403 104 HOH HOH . 
D 4 HOH E 4 404 36 HOH HOH . 
D 4 HOH E 5 405 74 HOH HOH . 
D 4 HOH E 6 406 20 HOH HOH . 
D 4 HOH E 7 407 29 HOH HOH . 
D 4 HOH E 8 408 17 HOH HOH . 
D 4 HOH E 9 409 59 HOH HOH . 
D 4 HOH E 10 410 39 HOH HOH . 
D 4 HOH E 11 411 3 HOH HOH . 
D 4 HOH E 12 412 94 HOH HOH . 
D 4 HOH E 13 413 45 HOH HOH . 
D 4 HOH E 14 414 19 HOH HOH . 
D 4 HOH E 15 415 81 HOH HOH . 
D 4 HOH E 16 416 91 HOH HOH . 
D 4 HOH E 17 417 34 HOH HOH . 
D 4 HOH E 18 418 62 HOH HOH . 
D 4 HOH E 19 419 101 HOH HOH . 
D 4 HOH E 20 420 38 HOH HOH . 
D 4 HOH E 21 421 14 HOH HOH . 
D 4 HOH E 22 422 5 HOH HOH . 
D 4 HOH E 23 423 50 HOH HOH . 
D 4 HOH E 24 424 53 HOH HOH . 
D 4 HOH E 25 425 56 HOH HOH . 
D 4 HOH E 26 426 21 HOH HOH . 
D 4 HOH E 27 427 44 HOH HOH . 
D 4 HOH E 28 428 32 HOH HOH . 
D 4 HOH E 29 429 33 HOH HOH . 
D 4 HOH E 30 430 75 HOH HOH . 
D 4 HOH E 31 431 27 HOH HOH . 
D 4 HOH E 32 432 67 HOH HOH . 
D 4 HOH E 33 433 46 HOH HOH . 
D 4 HOH E 34 434 64 HOH HOH . 
D 4 HOH E 35 435 49 HOH HOH . 
D 4 HOH E 36 436 102 HOH HOH . 
D 4 HOH E 37 437 30 HOH HOH . 
D 4 HOH E 38 438 100 HOH HOH . 
D 4 HOH E 39 439 55 HOH HOH . 
D 4 HOH E 40 440 86 HOH HOH . 
D 4 HOH E 41 441 54 HOH HOH . 
D 4 HOH E 42 442 88 HOH HOH . 
D 4 HOH E 43 443 85 HOH HOH . 
D 4 HOH E 44 444 51 HOH HOH . 
D 4 HOH E 45 445 61 HOH HOH . 
D 4 HOH E 46 446 26 HOH HOH . 
D 4 HOH E 47 447 68 HOH HOH . 
D 4 HOH E 48 448 7 HOH HOH . 
D 4 HOH E 49 449 22 HOH HOH . 
D 4 HOH E 50 450 9 HOH HOH . 
D 4 HOH E 51 451 69 HOH HOH . 
D 4 HOH E 52 452 4 HOH HOH . 
D 4 HOH E 53 453 47 HOH HOH . 
D 4 HOH E 54 454 10 HOH HOH . 
D 4 HOH E 55 455 43 HOH HOH . 
D 4 HOH E 56 456 98 HOH HOH . 
D 4 HOH E 57 457 35 HOH HOH . 
D 4 HOH E 58 458 23 HOH HOH . 
D 4 HOH E 59 459 42 HOH HOH . 
D 4 HOH E 60 460 41 HOH HOH . 
D 4 HOH E 61 461 79 HOH HOH . 
D 4 HOH E 62 462 31 HOH HOH . 
D 4 HOH E 63 463 40 HOH HOH . 
D 4 HOH E 64 464 70 HOH HOH . 
D 4 HOH E 65 465 37 HOH HOH . 
D 4 HOH E 66 466 57 HOH HOH . 
D 4 HOH E 67 467 1 HOH HOH . 
D 4 HOH E 68 468 90 HOH HOH . 
D 4 HOH E 69 469 80 HOH HOH . 
D 4 HOH E 70 470 103 HOH HOH . 
D 4 HOH E 71 471 87 HOH HOH . 
D 4 HOH E 72 472 12 HOH HOH . 
D 4 HOH E 73 473 8 HOH HOH . 
D 4 HOH E 74 474 72 HOH HOH . 
D 4 HOH E 75 475 15 HOH HOH . 
D 4 HOH E 76 476 66 HOH HOH . 
D 4 HOH E 77 477 18 HOH HOH . 
D 4 HOH E 78 478 13 HOH HOH . 
D 4 HOH E 79 479 71 HOH HOH . 
D 4 HOH E 80 480 48 HOH HOH . 
D 4 HOH E 81 481 99 HOH HOH . 
D 4 HOH E 82 482 24 HOH HOH . 
D 4 HOH E 83 483 89 HOH HOH . 
D 4 HOH E 84 484 77 HOH HOH . 
D 4 HOH E 85 485 97 HOH HOH . 
D 4 HOH E 86 486 25 HOH HOH . 
D 4 HOH E 87 487 63 HOH HOH . 
D 4 HOH E 88 488 11 HOH HOH . 
D 4 HOH E 89 489 16 HOH HOH . 
D 4 HOH E 90 490 2 HOH HOH . 
D 4 HOH E 91 491 28 HOH HOH . 
D 4 HOH E 92 492 58 HOH HOH . 
D 4 HOH E 93 493 82 HOH HOH . 
D 4 HOH E 94 494 73 HOH HOH . 
D 4 HOH E 95 495 52 HOH HOH . 
D 4 HOH E 96 496 60 HOH HOH . 
D 4 HOH E 97 497 92 HOH HOH . 
D 4 HOH E 98 498 83 HOH HOH . 
D 4 HOH E 99 499 93 HOH HOH . 
D 4 HOH E 100 500 78 HOH HOH . 
D 4 HOH E 101 501 76 HOH HOH . 
D 4 HOH E 102 502 65 HOH HOH . 
D 4 HOH E 103 503 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 18.245 -8.188 25.826 1 61.45 ? C1 GOL 301 E 1 
HETATM 2 O O1 GOL . . . B 2 18.339 -9.292 24.925 1 57.25 ? O1 GOL 301 E 1 
HETATM 3 C C2 GOL . . . B 2 17.059 -8.318 26.759 1 62.22 ? C2 GOL 301 E 1 
HETATM 4 O O2 GOL . . . B 2 17.342 -9.306 27.752 1 60.93 ? O2 GOL 301 E 1 
HETATM 5 C C3 GOL . . . B 2 16.661 -7.012 27.422 1 62.65 ? C3 GOL 301 E 1 
HETATM 6 O O3 GOL . . . B 2 15.821 -7.213 28.559 1 58.28 ? O3 GOL 301 E 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#