data_6V64 # _model_server_result.job_id U73d1EK4QBylBkLlR4rWxg _model_server_result.datetime_utc '2024-12-27 17:30:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6V64 # _exptl.entry_id 6V64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V64 _cell.length_a 61.869 _cell.length_b 86.599 _cell.length_c 50.516 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? covale ? covale1 B C PRO 13 B PRO 28 1_555 B N FTR 14 B FTR 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 B C FTR 14 B FTR 29 1_555 B N GLN 15 B GLN 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C ARG 36 B ARG 50 1_555 B N FTR 37 B FTR 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 B C FTR 37 B FTR 51 1_555 B N VAL 38 B VAL 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 B C PRO 49 B PRO 60 1_555 B N FTR 50 B FTR 60 1_555 C ? ? D ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C FTR 50 B FTR 60 1_555 B N ASP 51 B ASP 60 1_555 D ? ? E ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 B C ASN 91 B ASN 95 1_555 B N FTR 92 B FTR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C FTR 92 B FTR 96 1_555 B N ARG 93 B ARG 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C GLY 140 B GLY 140 1_555 B N FTR 141 B FTR 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C FTR 141 B FTR 141 1_555 B N GLY 142 B GLY 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C THR 147 B THR 147 1_555 B N FTR 148 B FTR 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale12 B C FTR 148 B FTR 148 1_555 B N THR 149 B THR 148 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.343 ? covale ? covale13 B C ARG 218 B ARG 206 1_555 B N FTR 219 B FTR 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 B C FTR 219 B FTR 207 1_555 B N TYR 220 B TYR 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale15 B C SER 226 B SER 214 1_555 B N FTR 227 B FTR 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale16 B C FTR 227 B FTR 215 1_555 B N GLY 228 B GLY 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale17 B C LYS 248 B LYS 236 1_555 B N FTR 249 B FTR 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale18 B C FTR 249 B FTR 237 1_555 B N ILE 250 B ILE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A O TYR 26 A TYR 14 1_555 C NA NA . A NA 101 1_555 J ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A O TYR 26 A TYR 14 1_555 C NA NA . A NA 101 2_555 J ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 C NA NA . A NA 101 1_555 F O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc4 C NA NA . A NA 101 1_555 F O HOH . A HOH 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 C NA NA . A NA 101 1_555 B OH TYR 134 B TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc6 C NA NA . A NA 101 2_555 B OH TYR 134 B TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc7 B O ARG 233 B ARG 221 1_555 E NA NA . B NA 302 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 B O LYS 236 B LYS 224 1_555 E NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc9 E NA NA . B NA 302 1_555 G O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc10 E NA NA . B NA 302 1_555 G O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc11 E NA NA . B NA 302 1_555 G O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc12 E NA NA . B NA 302 1_555 G O HOH . B HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6V64 _atom_sites.fract_transf_matrix[1][1] 0.016163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 101 101 NA NA . D 4 0G6 B 1 301 301 0G6 0G6 . E 3 NA B 1 302 302 NA NA . F 5 HOH A 1 201 201 HOH HOH . F 5 HOH A 2 202 202 HOH HOH . F 5 HOH A 3 203 203 HOH HOH . F 5 HOH A 4 204 204 HOH HOH . F 5 HOH A 5 205 205 HOH HOH . F 5 HOH A 6 206 206 HOH HOH . F 5 HOH A 7 207 207 HOH HOH . F 5 HOH A 8 208 208 HOH HOH . F 5 HOH A 9 209 209 HOH HOH . F 5 HOH A 10 210 210 HOH HOH . G 5 HOH B 1 401 401 HOH HOH . G 5 HOH B 2 402 402 HOH HOH . G 5 HOH B 3 403 403 HOH HOH . G 5 HOH B 4 404 404 HOH HOH . G 5 HOH B 5 405 405 HOH HOH . G 5 HOH B 6 406 406 HOH HOH . G 5 HOH B 7 407 407 HOH HOH . G 5 HOH B 8 408 408 HOH HOH . G 5 HOH B 9 409 409 HOH HOH . G 5 HOH B 10 410 410 HOH HOH . G 5 HOH B 11 411 411 HOH HOH . G 5 HOH B 12 412 412 HOH HOH . G 5 HOH B 13 413 413 HOH HOH . G 5 HOH B 14 414 414 HOH HOH . G 5 HOH B 15 415 415 HOH HOH . G 5 HOH B 16 416 416 HOH HOH . G 5 HOH B 17 417 417 HOH HOH . G 5 HOH B 18 418 418 HOH HOH . G 5 HOH B 19 419 419 HOH HOH . G 5 HOH B 20 420 420 HOH HOH . G 5 HOH B 21 421 421 HOH HOH . G 5 HOH B 22 422 422 HOH HOH . G 5 HOH B 23 423 423 HOH HOH . G 5 HOH B 24 424 424 HOH HOH . G 5 HOH B 25 425 425 HOH HOH . G 5 HOH B 26 426 426 HOH HOH . G 5 HOH B 27 427 427 HOH HOH . G 5 HOH B 28 428 428 HOH HOH . G 5 HOH B 29 429 429 HOH HOH . G 5 HOH B 30 430 430 HOH HOH . G 5 HOH B 31 431 431 HOH HOH . G 5 HOH B 32 432 432 HOH HOH . G 5 HOH B 33 433 433 HOH HOH . G 5 HOH B 34 434 434 HOH HOH . G 5 HOH B 35 435 435 HOH HOH . G 5 HOH B 36 436 436 HOH HOH . G 5 HOH B 37 437 437 HOH HOH . G 5 HOH B 38 438 438 HOH HOH . G 5 HOH B 39 439 439 HOH HOH . G 5 HOH B 40 440 440 HOH HOH . G 5 HOH B 41 441 441 HOH HOH . G 5 HOH B 42 442 442 HOH HOH . G 5 HOH B 43 443 443 HOH HOH . G 5 HOH B 44 444 444 HOH HOH . G 5 HOH B 45 445 445 HOH HOH . G 5 HOH B 46 446 446 HOH HOH . G 5 HOH B 47 447 447 HOH HOH . G 5 HOH B 48 448 448 HOH HOH . G 5 HOH B 49 449 449 HOH HOH . G 5 HOH B 50 450 450 HOH HOH . G 5 HOH B 51 451 451 HOH HOH . G 5 HOH B 52 452 452 HOH HOH . G 5 HOH B 53 453 453 HOH HOH . G 5 HOH B 54 454 454 HOH HOH . G 5 HOH B 55 455 455 HOH HOH . G 5 HOH B 56 456 456 HOH HOH . G 5 HOH B 57 457 457 HOH HOH . G 5 HOH B 58 458 458 HOH HOH . G 5 HOH B 59 459 459 HOH HOH . G 5 HOH B 60 460 460 HOH HOH . G 5 HOH B 61 461 461 HOH HOH . G 5 HOH B 62 462 462 HOH HOH . G 5 HOH B 63 463 463 HOH HOH . G 5 HOH B 64 464 464 HOH HOH . G 5 HOH B 65 465 465 HOH HOH . G 5 HOH B 66 466 466 HOH HOH . G 5 HOH B 67 467 467 HOH HOH . G 5 HOH B 68 468 468 HOH HOH . G 5 HOH B 69 469 469 HOH HOH . G 5 HOH B 70 470 470 HOH HOH . G 5 HOH B 71 471 471 HOH HOH . G 5 HOH B 72 472 472 HOH HOH . G 5 HOH B 73 473 473 HOH HOH . G 5 HOH B 74 474 474 HOH HOH . G 5 HOH B 75 475 475 HOH HOH . G 5 HOH B 76 476 476 HOH HOH . G 5 HOH B 77 477 477 HOH HOH . G 5 HOH B 78 478 478 HOH HOH . G 5 HOH B 79 479 479 HOH HOH . G 5 HOH B 80 480 480 HOH HOH . G 5 HOH B 81 481 481 HOH HOH . G 5 HOH B 82 482 482 HOH HOH . G 5 HOH B 83 483 483 HOH HOH . G 5 HOH B 84 484 484 HOH HOH . G 5 HOH B 85 485 485 HOH HOH . G 5 HOH B 86 486 486 HOH HOH . G 5 HOH B 87 487 487 HOH HOH . G 5 HOH B 88 488 488 HOH HOH . G 5 HOH B 89 489 489 HOH HOH . G 5 HOH B 90 490 490 HOH HOH . G 5 HOH B 91 491 491 HOH HOH . G 5 HOH B 92 492 492 HOH HOH . G 5 HOH B 93 493 493 HOH HOH . G 5 HOH B 94 494 494 HOH HOH . G 5 HOH B 95 495 495 HOH HOH . G 5 HOH B 96 496 496 HOH HOH . G 5 HOH B 97 497 497 HOH HOH . G 5 HOH B 98 498 498 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.002 _atom_site.Cartn_y 0.016 _atom_site.Cartn_z -20.259 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 30.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #