data_6V6V
#
_model_server_result.job_id            FoV1eW18AqFzrP10PNFDaA 
_model_server_result.datetime_utc      '2024-11-25 07:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6V6V 
#
_exptl.entry_id    6V6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.2 
_cell.angle_gamma         90 
_cell.entry_id            6V6V 
_cell.length_a            32.225 
_cell.length_b            86.924 
_cell.length_c            34.078 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A O PRO 38 A PRO 36 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc3 B O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc4 C MG MG . A MG 202 1_555 F O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 F O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 F O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 83 n n 
C1 O1 DIO sing 84 n n 
C1 H11 DIO sing 85 n n 
C1 H12 DIO sing 86 n n 
C2 C2' DIO sing 87 n n 
C2 O1 DIO sing 88 n n 
C2 H21 DIO sing 89 n n 
C2 H22 DIO sing 90 n n 
C1' O1' DIO sing 91 n n 
C1' "H1'1" DIO sing 92 n n 
C1' "H1'2" DIO sing 93 n n 
C2' O1' DIO sing 94 n n 
C2' "H2'1" DIO sing 95 n n 
C2' "H2'2" DIO sing 96 n n 
#
_atom_sites.entry_id                     6V6V 
_atom_sites.fract_transf_matrix[1][1]    0.031032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002824 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011504 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 201 200 GDP GDP . 
C 3 MG A 1 202 300 MG MG . 
D 4 DIO A 1 203 1 DIO DIO . 
E 4 DIO A 1 204 2 DIO DIO . 
F 5 HOH A 1 301 120 HOH HOH . 
F 5 HOH A 2 302 169 HOH HOH . 
F 5 HOH A 3 303 152 HOH HOH . 
F 5 HOH A 4 304 37 HOH HOH . 
F 5 HOH A 5 305 73 HOH HOH . 
F 5 HOH A 6 306 109 HOH HOH . 
F 5 HOH A 7 307 157 HOH HOH . 
F 5 HOH A 8 308 52 HOH HOH . 
F 5 HOH A 9 309 51 HOH HOH . 
F 5 HOH A 10 310 99 HOH HOH . 
F 5 HOH A 11 311 127 HOH HOH . 
F 5 HOH A 12 312 5 HOH HOH . 
F 5 HOH A 13 313 118 HOH HOH . 
F 5 HOH A 14 314 166 HOH HOH . 
F 5 HOH A 15 315 90 HOH HOH . 
F 5 HOH A 16 316 81 HOH HOH . 
F 5 HOH A 17 317 69 HOH HOH . 
F 5 HOH A 18 318 96 HOH HOH . 
F 5 HOH A 19 319 55 HOH HOH . 
F 5 HOH A 20 320 112 HOH HOH . 
F 5 HOH A 21 321 60 HOH HOH . 
F 5 HOH A 22 322 168 HOH HOH . 
F 5 HOH A 23 323 8 HOH HOH . 
F 5 HOH A 24 324 40 HOH HOH . 
F 5 HOH A 25 325 126 HOH HOH . 
F 5 HOH A 26 326 32 HOH HOH . 
F 5 HOH A 27 327 22 HOH HOH . 
F 5 HOH A 28 328 95 HOH HOH . 
F 5 HOH A 29 329 119 HOH HOH . 
F 5 HOH A 30 330 106 HOH HOH . 
F 5 HOH A 31 331 111 HOH HOH . 
F 5 HOH A 32 332 88 HOH HOH . 
F 5 HOH A 33 333 3 HOH HOH . 
F 5 HOH A 34 334 29 HOH HOH . 
F 5 HOH A 35 335 9 HOH HOH . 
F 5 HOH A 36 336 172 HOH HOH . 
F 5 HOH A 37 337 48 HOH HOH . 
F 5 HOH A 38 338 14 HOH HOH . 
F 5 HOH A 39 339 42 HOH HOH . 
F 5 HOH A 40 340 77 HOH HOH . 
F 5 HOH A 41 341 15 HOH HOH . 
F 5 HOH A 42 342 11 HOH HOH . 
F 5 HOH A 43 343 24 HOH HOH . 
F 5 HOH A 44 344 84 HOH HOH . 
F 5 HOH A 45 345 66 HOH HOH . 
F 5 HOH A 46 346 18 HOH HOH . 
F 5 HOH A 47 347 1 HOH HOH . 
F 5 HOH A 48 348 4 HOH HOH . 
F 5 HOH A 49 349 92 HOH HOH . 
F 5 HOH A 50 350 153 HOH HOH . 
F 5 HOH A 51 351 30 HOH HOH . 
F 5 HOH A 52 352 25 HOH HOH . 
F 5 HOH A 53 353 13 HOH HOH . 
F 5 HOH A 54 354 31 HOH HOH . 
F 5 HOH A 55 355 7 HOH HOH . 
F 5 HOH A 56 356 101 HOH HOH . 
F 5 HOH A 57 357 83 HOH HOH . 
F 5 HOH A 58 358 117 HOH HOH . 
F 5 HOH A 59 359 108 HOH HOH . 
F 5 HOH A 60 360 46 HOH HOH . 
F 5 HOH A 61 361 162 HOH HOH . 
F 5 HOH A 62 362 19 HOH HOH . 
F 5 HOH A 63 363 41 HOH HOH . 
F 5 HOH A 64 364 53 HOH HOH . 
F 5 HOH A 65 365 137 HOH HOH . 
F 5 HOH A 66 366 159 HOH HOH . 
F 5 HOH A 67 367 91 HOH HOH . 
F 5 HOH A 68 368 100 HOH HOH . 
F 5 HOH A 69 369 102 HOH HOH . 
F 5 HOH A 70 370 121 HOH HOH . 
F 5 HOH A 71 371 35 HOH HOH . 
F 5 HOH A 72 372 114 HOH HOH . 
F 5 HOH A 73 373 39 HOH HOH . 
F 5 HOH A 74 374 43 HOH HOH . 
F 5 HOH A 75 375 75 HOH HOH . 
F 5 HOH A 76 376 38 HOH HOH . 
F 5 HOH A 77 377 61 HOH HOH . 
F 5 HOH A 78 378 6 HOH HOH . 
F 5 HOH A 79 379 62 HOH HOH . 
F 5 HOH A 80 380 136 HOH HOH . 
F 5 HOH A 81 381 2 HOH HOH . 
F 5 HOH A 82 382 67 HOH HOH . 
F 5 HOH A 83 383 128 HOH HOH . 
F 5 HOH A 84 384 17 HOH HOH . 
F 5 HOH A 85 385 50 HOH HOH . 
F 5 HOH A 86 386 34 HOH HOH . 
F 5 HOH A 87 387 26 HOH HOH . 
F 5 HOH A 88 388 12 HOH HOH . 
F 5 HOH A 89 389 164 HOH HOH . 
F 5 HOH A 90 390 10 HOH HOH . 
F 5 HOH A 91 391 21 HOH HOH . 
F 5 HOH A 92 392 167 HOH HOH . 
F 5 HOH A 93 393 94 HOH HOH . 
F 5 HOH A 94 394 36 HOH HOH . 
F 5 HOH A 95 395 33 HOH HOH . 
F 5 HOH A 96 396 28 HOH HOH . 
F 5 HOH A 97 397 170 HOH HOH . 
F 5 HOH A 98 398 146 HOH HOH . 
F 5 HOH A 99 399 129 HOH HOH . 
F 5 HOH A 100 400 110 HOH HOH . 
F 5 HOH A 101 401 161 HOH HOH . 
F 5 HOH A 102 402 131 HOH HOH . 
F 5 HOH A 103 403 143 HOH HOH . 
F 5 HOH A 104 404 20 HOH HOH . 
F 5 HOH A 105 405 23 HOH HOH . 
F 5 HOH A 106 406 64 HOH HOH . 
F 5 HOH A 107 407 56 HOH HOH . 
F 5 HOH A 108 408 134 HOH HOH . 
F 5 HOH A 109 409 97 HOH HOH . 
F 5 HOH A 110 410 154 HOH HOH . 
F 5 HOH A 111 411 107 HOH HOH . 
F 5 HOH A 112 412 138 HOH HOH . 
F 5 HOH A 113 413 80 HOH HOH . 
F 5 HOH A 114 414 45 HOH HOH . 
F 5 HOH A 115 415 86 HOH HOH . 
F 5 HOH A 116 416 140 HOH HOH . 
F 5 HOH A 117 417 125 HOH HOH . 
F 5 HOH A 118 418 145 HOH HOH . 
F 5 HOH A 119 419 105 HOH HOH . 
F 5 HOH A 120 420 71 HOH HOH . 
F 5 HOH A 121 421 116 HOH HOH . 
F 5 HOH A 122 422 130 HOH HOH . 
F 5 HOH A 123 423 76 HOH HOH . 
F 5 HOH A 124 424 87 HOH HOH . 
F 5 HOH A 125 425 177 HOH HOH . 
F 5 HOH A 126 426 135 HOH HOH . 
F 5 HOH A 127 427 93 HOH HOH . 
F 5 HOH A 128 428 103 HOH HOH . 
F 5 HOH A 129 429 176 HOH HOH . 
F 5 HOH A 130 430 47 HOH HOH . 
F 5 HOH A 131 431 98 HOH HOH . 
F 5 HOH A 132 432 59 HOH HOH . 
F 5 HOH A 133 433 82 HOH HOH . 
F 5 HOH A 134 434 72 HOH HOH . 
F 5 HOH A 135 435 44 HOH HOH . 
F 5 HOH A 136 436 124 HOH HOH . 
F 5 HOH A 137 437 139 HOH HOH . 
F 5 HOH A 138 438 78 HOH HOH . 
F 5 HOH A 139 439 174 HOH HOH . 
F 5 HOH A 140 440 158 HOH HOH . 
F 5 HOH A 141 441 160 HOH HOH . 
F 5 HOH A 142 442 104 HOH HOH . 
F 5 HOH A 143 443 89 HOH HOH . 
F 5 HOH A 144 444 142 HOH HOH . 
F 5 HOH A 145 445 163 HOH HOH . 
F 5 HOH A 146 446 65 HOH HOH . 
F 5 HOH A 147 447 175 HOH HOH . 
F 5 HOH A 148 448 165 HOH HOH . 
F 5 HOH A 149 449 115 HOH HOH . 
F 5 HOH A 150 450 54 HOH HOH . 
F 5 HOH A 151 451 79 HOH HOH . 
F 5 HOH A 152 452 74 HOH HOH . 
F 5 HOH A 153 453 156 HOH HOH . 
F 5 HOH A 154 454 141 HOH HOH . 
F 5 HOH A 155 455 57 HOH HOH . 
F 5 HOH A 156 456 122 HOH HOH . 
F 5 HOH A 157 457 147 HOH HOH . 
F 5 HOH A 158 458 148 HOH HOH . 
F 5 HOH A 159 459 155 HOH HOH . 
F 5 HOH A 160 460 27 HOH HOH . 
F 5 HOH A 161 461 144 HOH HOH . 
F 5 HOH A 162 462 63 HOH HOH . 
F 5 HOH A 163 463 151 HOH HOH . 
F 5 HOH A 164 464 123 HOH HOH . 
F 5 HOH A 165 465 178 HOH HOH . 
F 5 HOH A 166 466 85 HOH HOH . 
F 5 HOH A 167 467 149 HOH HOH . 
F 5 HOH A 168 468 132 HOH HOH . 
F 5 HOH A 169 469 68 HOH HOH . 
F 5 HOH A 170 470 49 HOH HOH . 
F 5 HOH A 171 471 173 HOH HOH . 
F 5 HOH A 172 472 16 HOH HOH . 
F 5 HOH A 173 473 150 HOH HOH . 
F 5 HOH A 174 474 113 HOH HOH . 
F 5 HOH A 175 475 70 HOH HOH . 
F 5 HOH A 176 476 171 HOH HOH . 
F 5 HOH A 177 477 58 HOH HOH . 
F 5 HOH A 178 478 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . D 4 -10.185 3.493 7.958 1 34.03 ? C1 DIO 203 A 1 
HETATM 2 C C2 DIO . . . D 4 -9.047 2.42 6.091 1 23.47 ? C2 DIO 203 A 1 
HETATM 3 C C1' DIO . . . D 4 -9.118 2.697 8.77 1 39.33 ? C1' DIO 203 A 1 
HETATM 4 C C2' DIO . . . D 4 -8.564 1.235 6.99 1 31.13 ? C2' DIO 203 A 1 
HETATM 5 O O1 DIO . . . D 4 -10.248 2.971 6.647 1 23.4 ? O1 DIO 203 A 1 
HETATM 6 O O1' DIO . . . D 4 -9.107 1.387 8.277 1 37.21 ? O1' DIO 203 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#