data_6V6X
#
_model_server_result.job_id            JpOhMeJ8iX0nwH44LN1xug 
_model_server_result.datetime_utc      '2024-11-06 12:32:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6V6X 
#
_exptl.entry_id    6V6X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              460.369 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[2-(6-amino-9H-purin-9-yl)ethyl]-5-hydroxy-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6V6X 
_cell.length_a            89.804 
_cell.length_b            89.804 
_cell.length_c            133.547 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 D O04 QQP . A QQP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc8 B MN MN . A MN 201 1_555 D O01 QQP . A QQP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 D O20 QQP . A QQP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
metalc ? metalc10 C MN MN . A MN 202 1_555 D O04 QQP . A QQP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
#
_chem_comp.formula           'C19 H15 F3 N8 O3' 
_chem_comp.formula_weight    460.369 
_chem_comp.id                QQP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[2-(6-amino-9H-purin-9-yl)ethyl]-5-hydroxy-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 N17 QQP doub 386 n y 
C16 N15 QQP sing 387 n y 
N17 C18 QQP sing 388 n y 
N15 C14 QQP doub 389 n y 
C18 N19 QQP sing 390 n n 
C18 C13 QQP doub 391 n y 
C14 C13 QQP sing 392 n y 
C14 N10 QQP sing 393 n y 
C13 N12 QQP sing 394 n y 
N10 C09 QQP sing 395 n n 
N10 C11 QQP sing 396 n y 
C09 C08 QQP sing 397 n n 
N12 C11 QQP doub 398 n y 
C26 C27 QQP doub 399 n y 
C26 C25 QQP sing 400 n y 
F32 C29 QQP sing 401 n n 
C27 C28 QQP sing 402 n y 
F31 C29 QQP sing 403 n n 
C08 N07 QQP sing 404 n n 
C25 C24 QQP doub 405 n y 
C28 C29 QQP sing 406 n n 
C28 C23 QQP doub 407 n y 
C29 F30 QQP sing 408 n n 
N07 C06 QQP sing 409 n n 
C24 C23 QQP sing 410 n y 
C23 C22 QQP sing 411 n n 
N21 C22 QQP doub 412 n n 
N21 C05 QQP sing 413 n n 
C06 C05 QQP sing 414 n n 
C06 O20 QQP doub 415 n n 
C22 N33 QQP sing 416 n n 
C05 C03 QQP doub 417 n n 
N33 C02 QQP sing 418 n n 
C03 C02 QQP sing 419 n n 
C03 O04 QQP sing 420 n n 
C02 O01 QQP doub 421 n n 
C16 H1 QQP sing 422 n n 
C24 H2 QQP sing 423 n n 
C25 H3 QQP sing 424 n n 
C27 H4 QQP sing 425 n n 
N33 H5 QQP sing 426 n n 
C08 H6 QQP sing 427 n n 
C08 H7 QQP sing 428 n n 
C09 H8 QQP sing 429 n n 
C09 H9 QQP sing 430 n n 
C11 H10 QQP sing 431 n n 
C26 H11 QQP sing 432 n n 
N07 H12 QQP sing 433 n n 
N19 H13 QQP sing 434 n n 
N19 H14 QQP sing 435 n n 
O04 H15 QQP sing 436 n n 
#
_atom_sites.entry_id                     6V6X 
_atom_sites.fract_transf_matrix[1][1]    0.011135 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 QQP A 1 203 301 QQP 632 . 
E 4 QQ4 A 1 204 401 QQ4 PVP . 
F 5 SO4 A 1 205 203 SO4 SO4 . 
G 5 SO4 A 1 206 1 SO4 SO4 . 
H 6 HOH A 1 301 18 HOH HOH . 
H 6 HOH A 2 302 313 HOH HOH . 
H 6 HOH A 3 303 22 HOH HOH . 
H 6 HOH A 4 304 325 HOH HOH . 
H 6 HOH A 5 305 304 HOH HOH . 
H 6 HOH A 6 306 316 HOH HOH . 
H 6 HOH A 7 307 1 HOH HOH . 
H 6 HOH A 8 308 16 HOH HOH . 
H 6 HOH A 9 309 322 HOH HOH . 
H 6 HOH A 10 310 24 HOH HOH . 
H 6 HOH A 11 311 21 HOH HOH . 
H 6 HOH A 12 312 2 HOH HOH . 
H 6 HOH A 13 313 13 HOH HOH . 
H 6 HOH A 14 314 27 HOH HOH . 
H 6 HOH A 15 315 323 HOH HOH . 
H 6 HOH A 16 316 5 HOH HOH . 
H 6 HOH A 17 317 12 HOH HOH . 
H 6 HOH A 18 318 4 HOH HOH . 
H 6 HOH A 19 319 25 HOH HOH . 
H 6 HOH A 20 320 26 HOH HOH . 
H 6 HOH A 21 321 320 HOH HOH . 
H 6 HOH A 22 322 7 HOH HOH . 
H 6 HOH A 23 323 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N12 QQP . . . D 3 3.389 34.283 13.297 1 105.91 ? N12 QQP 203 A 1 
HETATM 2 C C13 QQP . . . D 3 3.779 33.689 12.144 1 100.1 ? C13 QQP 203 A 1 
HETATM 3 C C16 QQP . . . D 3 4.093 32.145 9.934 1 100.16 ? C16 QQP 203 A 1 
HETATM 4 C C18 QQP . . . D 3 4.838 33.908 11.214 1 105.53 ? C18 QQP 203 A 1 
HETATM 5 C C22 QQP . . . D 3 6.224 30.913 16.159 1 86.39 ? C22 QQP 203 A 1 
HETATM 6 C C24 QQP . . . D 3 6.949 33.136 15.248 1 108.02 ? C24 QQP 203 A 1 
HETATM 7 C C25 QQP . . . D 3 7.779 33.934 14.477 1 112.89 ? C25 QQP 203 A 1 
HETATM 8 C C27 QQP . . . D 3 9.028 31.991 13.822 1 98.55 ? C27 QQP 203 A 1 
HETATM 9 C C29 QQP . . . D 3 8.441 29.682 14.644 1 94.11 ? C29 QQP 203 A 1 
HETATM 10 N N33 QQP . . . D 3 6.712 30.144 17.334 1 82 ? N33 QQP 203 A 1 
HETATM 11 C C02 QQP . . . D 3 5.78 29.342 18.11 1 75.16 ? C02 QQP 203 A 1 
HETATM 12 C C03 QQP . . . D 3 4.335 29.285 17.733 1 71.36 ? C03 QQP 203 A 1 
HETATM 13 C C05 QQP . . . D 3 3.865 30.062 16.551 1 78.45 ? C05 QQP 203 A 1 
HETATM 14 C C06 QQP . . . D 3 2.416 30.07 16.088 1 75.64 ? C06 QQP 203 A 1 
HETATM 15 C C08 QQP . . . D 3 0.809 31.018 14.378 1 99.27 ? C08 QQP 203 A 1 
HETATM 16 C C09 QQP . . . D 3 0.889 31.726 13.026 1 101.54 ? C09 QQP 203 A 1 
HETATM 17 C C11 QQP . . . D 3 2.305 33.649 13.751 1 106.1 ? C11 QQP 203 A 1 
HETATM 18 C C14 QQP . . . D 3 2.921 32.662 11.888 1 102.85 ? C14 QQP 203 A 1 
HETATM 19 C C23 QQP . . . D 3 7.159 31.769 15.309 1 95.51 ? C23 QQP 203 A 1 
HETATM 20 C C26 QQP . . . D 3 8.819 33.359 13.765 1 109.62 ? C26 QQP 203 A 1 
HETATM 21 C C28 QQP . . . D 3 8.197 31.191 14.592 1 97.71 ? C28 QQP 203 A 1 
HETATM 22 F F30 QQP . . . D 3 8.757 29.315 15.921 1 96.93 ? F30 QQP 203 A 1 
HETATM 23 F F31 QQP . . . D 3 7.323 29.013 14.236 1 92.99 ? F31 QQP 203 A 1 
HETATM 24 F F32 QQP . . . D 3 9.479 29.366 13.816 1 95.62 ? F32 QQP 203 A 1 
HETATM 25 N N07 QQP . . . D 3 2.13 30.9 14.94 1 79.2 ? N07 QQP 203 A 1 
HETATM 26 N N10 QQP . . . D 3 2.01 32.652 12.908 1 100.83 ? N10 QQP 203 A 1 
HETATM 27 N N15 QQP . . . D 3 3.098 31.905 10.769 1 103.23 ? N15 QQP 203 A 1 
HETATM 28 N N17 QQP . . . D 3 4.955 33.13 10.146 1 104.91 ? N17 QQP 203 A 1 
HETATM 29 N N19 QQP . . . D 3 5.789 34.982 11.433 1 100.28 ? N19 QQP 203 A 1 
HETATM 30 N N21 QQP . . . D 3 4.795 30.857 15.783 1 85.7 ? N21 QQP 203 A 1 
HETATM 31 O O01 QQP . . . D 3 6.169 28.731 19.045 1 71.67 ? O01 QQP 203 A 1 
HETATM 32 O O04 QQP . . . D 3 3.435 28.513 18.48 1 76.87 ? O04 QQP 203 A 1 
HETATM 33 O O20 QQP . . . D 3 1.575 29.436 16.632 1 74.43 ? O20 QQP 203 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#