data_6V70
#
_model_server_result.job_id            87LNN0chdUuE4expMosffA 
_model_server_result.datetime_utc      '2025-08-30 12:55:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v70 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6V70 
#
_exptl.entry_id    6V70 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6V70 
_cell.length_a            80.352 
_cell.length_b            80.352 
_cell.length_c            245.373 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V70 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    'R 3 2"' 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TRP 29 A TRP 55 1_555 A N MSE 30 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 30 A MSE 56 1_555 A N HIS 31 A HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C LYS 95 A LYS 121 1_555 A N MSE 96 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 A C MSE 96 A MSE 122 1_555 A N GLY 97 A GLY 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale5 A C GLY 98 A GLY 124 1_555 A N MSE 99 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 A C MSE 99 A MSE 125 1_555 A N ASP 100 A ASP 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 A C HIS 103 A HIS 129 1_555 A N MSE 104 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 A C MSE 104 A MSE 130 1_555 A N LEU 105 A LEU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale9 A C LEU 124 A LEU 150 1_555 A N MSE 125 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MSE 125 A MSE 151 1_555 A N PRO 126 A PRO 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 A C CYS 173 A CYS 199 1_555 A N MSE 174 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale12 A C MSE 174 A MSE 200 1_555 A N ILE 175 A ILE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 A C GLY 178 A GLY 204 1_555 A N MSE 179 A MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 A C MSE 179 A MSE 205 1_555 A N THR 180 A THR 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A NE2 HIS 90 A HIS 116 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc2 A ND1 HIS 92 A HIS 118 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc3 A OD1 ASP 100 A ASP 126 1_555 H CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc4 A OD2 ASP 100 A ASP 126 1_555 H CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc5 A NE2 HIS 103 A HIS 129 1_555 H CD CD . A CD 307 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc6 A NE2 HIS 154 A HIS 180 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc7 A SG CYS 173 A CYS 199 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc8 A NE2 HIS 215 A HIS 241 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc9 D O1 EDO . A EDO 303 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc10 D O2 EDO . A EDO 303 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc11 G CD CD . A CD 306 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc12 H CD CD . A CD 307 1_555 L O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6V70 
_atom_sites.fract_transf_matrix[1][1]    0.012445 
_atom_sites.fract_transf_matrix[1][2]    0.007185 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 301 276 CL CL . 
C 2 CL A 1 302 277 CL CL . 
D 3 EDO A 1 303 278 EDO EDO . 
E 2 CL A 1 304 279 CL CL . 
F 4 CD A 1 305 270 CD CD . 
G 4 CD A 1 306 271 CD CD . 
H 4 CD A 1 307 272 CD CD . 
I 3 EDO A 1 308 273 EDO EDO . 
J 5 FMT A 1 309 274 FMT FMT . 
K 2 CL A 1 310 275 CL CL . 
L 6 HOH A 1 401 117 HOH HOH . 
L 6 HOH A 2 402 58 HOH HOH . 
L 6 HOH A 3 403 39 HOH HOH . 
L 6 HOH A 4 404 78 HOH HOH . 
L 6 HOH A 5 405 64 HOH HOH . 
L 6 HOH A 6 406 63 HOH HOH . 
L 6 HOH A 7 407 36 HOH HOH . 
L 6 HOH A 8 408 125 HOH HOH . 
L 6 HOH A 9 409 108 HOH HOH . 
L 6 HOH A 10 410 142 HOH HOH . 
L 6 HOH A 11 411 37 HOH HOH . 
L 6 HOH A 12 412 51 HOH HOH . 
L 6 HOH A 13 413 89 HOH HOH . 
L 6 HOH A 14 414 25 HOH HOH . 
L 6 HOH A 15 415 83 HOH HOH . 
L 6 HOH A 16 416 20 HOH HOH . 
L 6 HOH A 17 417 10 HOH HOH . 
L 6 HOH A 18 418 11 HOH HOH . 
L 6 HOH A 19 419 17 HOH HOH . 
L 6 HOH A 20 420 48 HOH HOH . 
L 6 HOH A 21 421 91 HOH HOH . 
L 6 HOH A 22 422 128 HOH HOH . 
L 6 HOH A 23 423 124 HOH HOH . 
L 6 HOH A 24 424 56 HOH HOH . 
L 6 HOH A 25 425 33 HOH HOH . 
L 6 HOH A 26 426 57 HOH HOH . 
L 6 HOH A 27 427 21 HOH HOH . 
L 6 HOH A 28 428 126 HOH HOH . 
L 6 HOH A 29 429 41 HOH HOH . 
L 6 HOH A 30 430 134 HOH HOH . 
L 6 HOH A 31 431 52 HOH HOH . 
L 6 HOH A 32 432 100 HOH HOH . 
L 6 HOH A 33 433 34 HOH HOH . 
L 6 HOH A 34 434 87 HOH HOH . 
L 6 HOH A 35 435 28 HOH HOH . 
L 6 HOH A 36 436 16 HOH HOH . 
L 6 HOH A 37 437 27 HOH HOH . 
L 6 HOH A 38 438 18 HOH HOH . 
L 6 HOH A 39 439 43 HOH HOH . 
L 6 HOH A 40 440 31 HOH HOH . 
L 6 HOH A 41 441 26 HOH HOH . 
L 6 HOH A 42 442 19 HOH HOH . 
L 6 HOH A 43 443 66 HOH HOH . 
L 6 HOH A 44 444 110 HOH HOH . 
L 6 HOH A 45 445 22 HOH HOH . 
L 6 HOH A 46 446 94 HOH HOH . 
L 6 HOH A 47 447 53 HOH HOH . 
L 6 HOH A 48 448 69 HOH HOH . 
L 6 HOH A 49 449 103 HOH HOH . 
L 6 HOH A 50 450 2 HOH HOH . 
L 6 HOH A 51 451 96 HOH HOH . 
L 6 HOH A 52 452 82 HOH HOH . 
L 6 HOH A 53 453 40 HOH HOH . 
L 6 HOH A 54 454 46 HOH HOH . 
L 6 HOH A 55 455 106 HOH HOH . 
L 6 HOH A 56 456 42 HOH HOH . 
L 6 HOH A 57 457 104 HOH HOH . 
L 6 HOH A 58 458 38 HOH HOH . 
L 6 HOH A 59 459 50 HOH HOH . 
L 6 HOH A 60 460 35 HOH HOH . 
L 6 HOH A 61 461 14 HOH HOH . 
L 6 HOH A 62 462 95 HOH HOH . 
L 6 HOH A 63 463 15 HOH HOH . 
L 6 HOH A 64 464 131 HOH HOH . 
L 6 HOH A 65 465 109 HOH HOH . 
L 6 HOH A 66 466 132 HOH HOH . 
L 6 HOH A 67 467 93 HOH HOH . 
L 6 HOH A 68 468 23 HOH HOH . 
L 6 HOH A 69 469 92 HOH HOH . 
L 6 HOH A 70 470 54 HOH HOH . 
L 6 HOH A 71 471 84 HOH HOH . 
L 6 HOH A 72 472 138 HOH HOH . 
L 6 HOH A 73 473 44 HOH HOH . 
L 6 HOH A 74 474 130 HOH HOH . 
L 6 HOH A 75 475 12 HOH HOH . 
L 6 HOH A 76 476 127 HOH HOH . 
L 6 HOH A 77 477 72 HOH HOH . 
L 6 HOH A 78 478 101 HOH HOH . 
L 6 HOH A 79 479 102 HOH HOH . 
L 6 HOH A 80 480 122 HOH HOH . 
L 6 HOH A 81 481 29 HOH HOH . 
L 6 HOH A 82 482 123 HOH HOH . 
L 6 HOH A 83 483 49 HOH HOH . 
L 6 HOH A 84 484 112 HOH HOH . 
L 6 HOH A 85 485 24 HOH HOH . 
L 6 HOH A 86 486 77 HOH HOH . 
L 6 HOH A 87 487 118 HOH HOH . 
L 6 HOH A 88 488 129 HOH HOH . 
L 6 HOH A 89 489 73 HOH HOH . 
L 6 HOH A 90 490 86 HOH HOH . 
L 6 HOH A 91 491 136 HOH HOH . 
L 6 HOH A 92 492 140 HOH HOH . 
L 6 HOH A 93 493 59 HOH HOH . 
L 6 HOH A 94 494 107 HOH HOH . 
L 6 HOH A 95 495 139 HOH HOH . 
L 6 HOH A 96 496 121 HOH HOH . 
L 6 HOH A 97 497 98 HOH HOH . 
L 6 HOH A 98 498 105 HOH HOH . 
L 6 HOH A 99 499 135 HOH HOH . 
L 6 HOH A 100 500 74 HOH HOH . 
L 6 HOH A 101 501 1 HOH HOH . 
L 6 HOH A 102 502 30 HOH HOH . 
L 6 HOH A 103 503 90 HOH HOH . 
L 6 HOH A 104 504 97 HOH HOH . 
L 6 HOH A 105 505 137 HOH HOH . 
L 6 HOH A 106 506 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -19.404 -39.097 -25.096 1 68.99 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . D 3 -18.067 -39.63 -25.141 1 65.64 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . D 3 -19.553 -37.987 -24.044 1 54.98 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . D 3 -19.129 -36.637 -24.306 1 41.44 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           71 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#