data_6V76
#
_model_server_result.job_id            xTtXkZU9uKyEratMYnwWxA 
_model_server_result.datetime_utc      '2024-11-04 22:18:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":603}' 
#
_entry.id    6V76 
#
_exptl.entry_id    6V76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.36 
_cell.angle_gamma         90 
_cell.entry_id            6V76 
_cell.length_a            81.04 
_cell.length_b            154.98 
_cell.length_c            91.96 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,O,T,U,V,W,X,Y,DA,FA 1 1 
D,Z,AA,BA,CA,GA 1 2 
B,P,Q,R,S,EA 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_454 x-1,y,z-1 1 0 0 0 1 0 0 0 1 -61.355647 0 -89.828547 
3 'crystal symmetry operation' 2_445 -x-1,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -81.04 -77.49 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 R N N 
? 6 S N N 
? 6 V N N 
? 6 W N N 
? 6 AA N N 
? 6 BA N N 
? 6 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 94 C ASN 75 1_555 F K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc2 A OG SER 96 C SER 77 1_555 F K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc3 A OD1 ASP 132 C ASP 113 1_555 F K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
metalc ? metalc4 A O THR 133 C THR 114 1_555 F K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc5 A OE1 GLU 291 C GLU 272 1_555 G MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc6 A OD2 ASP 315 C ASP 296 1_555 G MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc7 G MG MG . C MG 603 1_555 N O1 OXL . C OXL 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc8 G MG MG . C MG 603 1_555 N O2 OXL . C OXL 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc9 C OE2 GLU 291 B GLU 272 1_555 T MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc10 C OD2 ASP 315 B ASP 296 1_555 T MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc11 T MG MG . B MG 601 1_555 X O3 OXL . B OXL 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc12 T MG MG . B MG 601 1_555 X O4 OXL . B OXL 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     6V76 
_atom_sites.fract_transf_matrix[1][1]    0.01234 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002703 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006452 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CL C 1 601 2 CL CL . 
F 3 K C 1 602 3 K K . 
G 4 MG C 1 603 3 MG MG . 
H 5 FBP C 1 604 4 FBP FBP . 
I 6 GOL C 1 605 5 GOL GOL . 
J 6 GOL C 1 606 6 GOL GOL . 
K 6 GOL C 1 607 7 GOL GOL . 
L 6 GOL C 1 608 8 GOL GOL . 
M 6 GOL C 1 609 9 GOL GOL . 
N 7 OXL C 1 610 1 OXL OXL . 
O 8 VAL C 1 611 601 VAL VAL . 
P 2 CL A 1 601 1 CL CL . 
Q 5 FBP A 1 602 1 FBP FBP . 
R 6 GOL A 1 603 10 GOL GOL . 
S 6 GOL A 1 604 11 GOL GOL . 
T 4 MG B 1 601 2 MG MG . 
U 5 FBP B 1 602 2 FBP FBP . 
V 6 GOL B 1 603 1 GOL GOL . 
W 6 GOL B 1 604 12 GOL GOL . 
X 7 OXL B 1 605 3 OXL OXL . 
Y 8 VAL B 1 606 601 VAL VAL . 
Z 5 FBP D 1 601 3 FBP FBP . 
AA 6 GOL D 1 602 2 GOL GOL . 
BA 6 GOL D 1 603 3 GOL GOL . 
CA 6 GOL D 1 604 4 GOL GOL . 
DA 9 HOH C 1 701 43 HOH HOH . 
DA 9 HOH C 2 702 42 HOH HOH . 
DA 9 HOH C 3 703 50 HOH HOH . 
DA 9 HOH C 4 704 44 HOH HOH . 
DA 9 HOH C 5 705 47 HOH HOH . 
DA 9 HOH C 6 706 53 HOH HOH . 
DA 9 HOH C 7 707 49 HOH HOH . 
DA 9 HOH C 8 708 34 HOH HOH . 
DA 9 HOH C 9 709 45 HOH HOH . 
DA 9 HOH C 10 710 48 HOH HOH . 
DA 9 HOH C 11 711 46 HOH HOH . 
DA 9 HOH C 12 712 33 HOH HOH . 
DA 9 HOH C 13 713 51 HOH HOH . 
DA 9 HOH C 14 714 35 HOH HOH . 
EA 9 HOH A 1 701 66 HOH HOH . 
EA 9 HOH A 2 702 16 HOH HOH . 
EA 9 HOH A 3 703 65 HOH HOH . 
EA 9 HOH A 4 704 14 HOH HOH . 
EA 9 HOH A 5 705 6 HOH HOH . 
EA 9 HOH A 6 706 58 HOH HOH . 
EA 9 HOH A 7 707 64 HOH HOH . 
EA 9 HOH A 8 708 18 HOH HOH . 
EA 9 HOH A 9 709 67 HOH HOH . 
EA 9 HOH A 10 710 59 HOH HOH . 
EA 9 HOH A 11 711 57 HOH HOH . 
EA 9 HOH A 12 712 5 HOH HOH . 
EA 9 HOH A 13 713 17 HOH HOH . 
EA 9 HOH A 14 714 15 HOH HOH . 
EA 9 HOH A 15 715 20 HOH HOH . 
EA 9 HOH A 16 716 19 HOH HOH . 
EA 9 HOH A 17 717 4 HOH HOH . 
EA 9 HOH A 18 718 55 HOH HOH . 
EA 9 HOH A 19 719 21 HOH HOH . 
EA 9 HOH A 20 720 56 HOH HOH . 
EA 9 HOH A 21 721 2 HOH HOH . 
EA 9 HOH A 22 722 3 HOH HOH . 
FA 9 HOH B 1 701 7 HOH HOH . 
FA 9 HOH B 2 702 61 HOH HOH . 
FA 9 HOH B 3 703 11 HOH HOH . 
FA 9 HOH B 4 704 28 HOH HOH . 
FA 9 HOH B 5 705 12 HOH HOH . 
FA 9 HOH B 6 706 23 HOH HOH . 
FA 9 HOH B 7 707 52 HOH HOH . 
FA 9 HOH B 8 708 29 HOH HOH . 
FA 9 HOH B 9 709 9 HOH HOH . 
FA 9 HOH B 10 710 41 HOH HOH . 
FA 9 HOH B 11 711 24 HOH HOH . 
FA 9 HOH B 12 712 30 HOH HOH . 
FA 9 HOH B 13 713 27 HOH HOH . 
FA 9 HOH B 14 714 22 HOH HOH . 
FA 9 HOH B 15 715 10 HOH HOH . 
FA 9 HOH B 16 716 8 HOH HOH . 
FA 9 HOH B 17 717 31 HOH HOH . 
FA 9 HOH B 18 718 26 HOH HOH . 
FA 9 HOH B 19 719 25 HOH HOH . 
GA 9 HOH D 1 701 63 HOH HOH . 
GA 9 HOH D 2 702 13 HOH HOH . 
GA 9 HOH D 3 703 39 HOH HOH . 
GA 9 HOH D 4 704 37 HOH HOH . 
GA 9 HOH D 5 705 62 HOH HOH . 
GA 9 HOH D 6 706 32 HOH HOH . 
GA 9 HOH D 7 707 54 HOH HOH . 
GA 9 HOH D 8 708 36 HOH HOH . 
GA 9 HOH D 9 709 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . V 6 -56.41 43.967 -9.26 1 52.61 ? C1 GOL 603 B 1 
HETATM 2 O O1 GOL . . . V 6 -57.075 42.773 -9.526 1 49.61 ? O1 GOL 603 B 1 
HETATM 3 C C2 GOL . . . V 6 -55.269 44.093 -10.291 1 57.75 ? C2 GOL 603 B 1 
HETATM 4 O O2 GOL . . . V 6 -55.707 44.645 -11.484 1 54.39 ? O2 GOL 603 B 1 
HETATM 5 C C3 GOL . . . V 6 -54.19 44.96 -9.597 1 59.93 ? C3 GOL 603 B 1 
HETATM 6 O O3 GOL . . . V 6 -53.585 44.155 -8.629 1 47.47 ? O3 GOL 603 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#