data_6V7N # _model_server_result.job_id G_aTzU8ehFWgVaB9NeIe5Q _model_server_result.datetime_utc '2024-11-22 23:17:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 6V7N # _exptl.entry_id 6V7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V7N _cell.length_a 97.145 _cell.length_b 165.486 _cell.length_c 60.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,K 1 1 B,D,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 3 NAG 2 n C NAG 2 C 2 NAG A 4 NAG 2 n D NAG 1 D 1 NAG B 3 NAG 2 n D NAG 2 D 2 NAG B 4 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 227 A CYS 227 1_555 A SG CYS 236 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 227 B CYS 227 1_555 B SG CYS 236 B CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 252 A ASN 252 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B ND2 ASN 15 B ASN 15 1_555 G C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 B ND2 ASN 140 B ASN 140 1_555 H C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 B ND2 ASN 252 B ASN 252 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6V7N _atom_sites.fract_transf_matrix[1][1] 0.010294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 401 1 NAG NAG . F 4 SO4 A 1 404 1 SO4 SO4 . G 3 NAG B 1 401 1 NAG NAG . H 3 NAG B 1 402 2 NAG NAG . I 4 SO4 B 1 405 2 SO4 SO4 . J 4 SO4 B 1 406 3 SO4 SO4 . K 5 HOH A 1 501 264 HOH HOH . K 5 HOH A 2 502 209 HOH HOH . K 5 HOH A 3 503 263 HOH HOH . K 5 HOH A 4 504 45 HOH HOH . K 5 HOH A 5 505 262 HOH HOH . K 5 HOH A 6 506 173 HOH HOH . K 5 HOH A 7 507 259 HOH HOH . K 5 HOH A 8 508 258 HOH HOH . K 5 HOH A 9 509 14 HOH HOH . K 5 HOH A 10 510 39 HOH HOH . K 5 HOH A 11 511 20 HOH HOH . K 5 HOH A 12 512 150 HOH HOH . K 5 HOH A 13 513 107 HOH HOH . K 5 HOH A 14 514 174 HOH HOH . K 5 HOH A 15 515 261 HOH HOH . K 5 HOH A 16 516 260 HOH HOH . K 5 HOH A 17 517 95 HOH HOH . K 5 HOH A 18 518 116 HOH HOH . K 5 HOH A 19 519 7 HOH HOH . K 5 HOH A 20 520 8 HOH HOH . K 5 HOH A 21 521 138 HOH HOH . K 5 HOH A 22 522 117 HOH HOH . K 5 HOH A 23 523 108 HOH HOH . K 5 HOH A 24 524 127 HOH HOH . K 5 HOH A 25 525 6 HOH HOH . K 5 HOH A 26 526 75 HOH HOH . K 5 HOH A 27 527 250 HOH HOH . K 5 HOH A 28 528 201 HOH HOH . K 5 HOH A 29 529 249 HOH HOH . K 5 HOH A 30 530 21 HOH HOH . K 5 HOH A 31 531 26 HOH HOH . K 5 HOH A 32 532 144 HOH HOH . K 5 HOH A 33 533 38 HOH HOH . K 5 HOH A 34 534 219 HOH HOH . K 5 HOH A 35 535 178 HOH HOH . K 5 HOH A 36 536 240 HOH HOH . K 5 HOH A 37 537 9 HOH HOH . K 5 HOH A 38 538 88 HOH HOH . K 5 HOH A 39 539 61 HOH HOH . K 5 HOH A 40 540 194 HOH HOH . K 5 HOH A 41 541 129 HOH HOH . K 5 HOH A 42 542 71 HOH HOH . K 5 HOH A 43 543 73 HOH HOH . K 5 HOH A 44 544 70 HOH HOH . K 5 HOH A 45 545 147 HOH HOH . K 5 HOH A 46 546 86 HOH HOH . K 5 HOH A 47 547 172 HOH HOH . K 5 HOH A 48 548 235 HOH HOH . K 5 HOH A 49 549 37 HOH HOH . K 5 HOH A 50 550 47 HOH HOH . K 5 HOH A 51 551 89 HOH HOH . K 5 HOH A 52 552 66 HOH HOH . K 5 HOH A 53 553 35 HOH HOH . K 5 HOH A 54 554 266 HOH HOH . K 5 HOH A 55 555 51 HOH HOH . K 5 HOH A 56 556 122 HOH HOH . K 5 HOH A 57 557 81 HOH HOH . K 5 HOH A 58 558 32 HOH HOH . K 5 HOH A 59 559 52 HOH HOH . K 5 HOH A 60 560 28 HOH HOH . K 5 HOH A 61 561 16 HOH HOH . K 5 HOH A 62 562 218 HOH HOH . K 5 HOH A 63 563 152 HOH HOH . K 5 HOH A 64 564 53 HOH HOH . K 5 HOH A 65 565 4 HOH HOH . K 5 HOH A 66 566 105 HOH HOH . K 5 HOH A 67 567 162 HOH HOH . K 5 HOH A 68 568 202 HOH HOH . K 5 HOH A 69 569 197 HOH HOH . K 5 HOH A 70 570 139 HOH HOH . K 5 HOH A 71 571 210 HOH HOH . K 5 HOH A 72 572 155 HOH HOH . K 5 HOH A 73 573 229 HOH HOH . K 5 HOH A 74 574 79 HOH HOH . K 5 HOH A 75 575 238 HOH HOH . K 5 HOH A 76 576 153 HOH HOH . K 5 HOH A 77 577 154 HOH HOH . L 5 HOH B 1 501 126 HOH HOH . L 5 HOH B 2 502 31 HOH HOH . L 5 HOH B 3 503 93 HOH HOH . L 5 HOH B 4 504 17 HOH HOH . L 5 HOH B 5 505 13 HOH HOH . L 5 HOH B 6 506 22 HOH HOH . L 5 HOH B 7 507 246 HOH HOH . L 5 HOH B 8 508 41 HOH HOH . L 5 HOH B 9 509 36 HOH HOH . L 5 HOH B 10 510 40 HOH HOH . L 5 HOH B 11 511 180 HOH HOH . L 5 HOH B 12 512 128 HOH HOH . L 5 HOH B 13 513 268 HOH HOH . L 5 HOH B 14 514 27 HOH HOH . L 5 HOH B 15 515 98 HOH HOH . L 5 HOH B 16 516 15 HOH HOH . L 5 HOH B 17 517 94 HOH HOH . L 5 HOH B 18 518 112 HOH HOH . L 5 HOH B 19 519 24 HOH HOH . L 5 HOH B 20 520 130 HOH HOH . L 5 HOH B 21 521 125 HOH HOH . L 5 HOH B 22 522 33 HOH HOH . L 5 HOH B 23 523 203 HOH HOH . L 5 HOH B 24 524 186 HOH HOH . L 5 HOH B 25 525 12 HOH HOH . L 5 HOH B 26 526 196 HOH HOH . L 5 HOH B 27 527 223 HOH HOH . L 5 HOH B 28 528 165 HOH HOH . L 5 HOH B 29 529 104 HOH HOH . L 5 HOH B 30 530 183 HOH HOH . L 5 HOH B 31 531 5 HOH HOH . L 5 HOH B 32 532 115 HOH HOH . L 5 HOH B 33 533 55 HOH HOH . L 5 HOH B 34 534 269 HOH HOH . L 5 HOH B 35 535 101 HOH HOH . L 5 HOH B 36 536 142 HOH HOH . L 5 HOH B 37 537 54 HOH HOH . L 5 HOH B 38 538 10 HOH HOH . L 5 HOH B 39 539 99 HOH HOH . L 5 HOH B 40 540 177 HOH HOH . L 5 HOH B 41 541 111 HOH HOH . L 5 HOH B 42 542 121 HOH HOH . L 5 HOH B 43 543 74 HOH HOH . L 5 HOH B 44 544 124 HOH HOH . L 5 HOH B 45 545 91 HOH HOH . L 5 HOH B 46 546 11 HOH HOH . L 5 HOH B 47 547 211 HOH HOH . L 5 HOH B 48 548 160 HOH HOH . L 5 HOH B 49 549 123 HOH HOH . L 5 HOH B 50 550 58 HOH HOH . L 5 HOH B 51 551 182 HOH HOH . L 5 HOH B 52 552 113 HOH HOH . L 5 HOH B 53 553 226 HOH HOH . L 5 HOH B 54 554 76 HOH HOH . L 5 HOH B 55 555 168 HOH HOH . L 5 HOH B 56 556 34 HOH HOH . L 5 HOH B 57 557 87 HOH HOH . L 5 HOH B 58 558 225 HOH HOH . L 5 HOH B 59 559 232 HOH HOH . L 5 HOH B 60 560 80 HOH HOH . L 5 HOH B 61 561 239 HOH HOH . L 5 HOH B 62 562 256 HOH HOH . L 5 HOH B 63 563 23 HOH HOH . L 5 HOH B 64 564 143 HOH HOH . L 5 HOH B 65 565 220 HOH HOH . L 5 HOH B 66 566 200 HOH HOH . L 5 HOH B 67 567 179 HOH HOH . L 5 HOH B 68 568 195 HOH HOH . L 5 HOH B 69 569 18 HOH HOH . L 5 HOH B 70 570 97 HOH HOH . L 5 HOH B 71 571 189 HOH HOH . L 5 HOH B 72 572 120 HOH HOH . L 5 HOH B 73 573 208 HOH HOH . L 5 HOH B 74 574 48 HOH HOH . L 5 HOH B 75 575 29 HOH HOH . L 5 HOH B 76 576 176 HOH HOH . L 5 HOH B 77 577 110 HOH HOH . L 5 HOH B 78 578 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 3 165.176 8.613 114.313 1 104.8 ? C1 NAG 402 B 1 HETATM 2 C C2 NAG . . . H 3 165.801 8.609 115.715 1 107.38 ? C2 NAG 402 B 1 HETATM 3 C C3 NAG . . . H 3 166.517 7.255 115.814 1 109.11 ? C3 NAG 402 B 1 HETATM 4 C C4 NAG . . . H 3 165.578 6.085 115.519 1 109.31 ? C4 NAG 402 B 1 HETATM 5 C C5 NAG . . . H 3 164.945 6.234 114.136 1 107.99 ? C5 NAG 402 B 1 HETATM 6 C C6 NAG . . . H 3 163.885 5.199 113.836 1 108.59 ? C6 NAG 402 B 1 HETATM 7 C C7 NAG . . . H 3 167.366 10.084 117.003 1 109.66 ? C7 NAG 402 B 1 HETATM 8 C C8 NAG . . . H 3 168.461 11.102 116.867 1 109.14 ? C8 NAG 402 B 1 HETATM 9 N N2 NAG . . . H 3 166.762 9.701 115.843 1 108.57 ? N2 NAG 402 B 1 HETATM 10 O O3 NAG . . . H 3 167.102 7.073 117.099 1 111.13 ? O3 NAG 402 B 1 HETATM 11 O O4 NAG . . . H 3 166.326 4.874 115.55 1 110.76 ? O4 NAG 402 B 1 HETATM 12 O O5 NAG . . . H 3 164.301 7.514 114.052 1 105.96 ? O5 NAG 402 B 1 HETATM 13 O O6 NAG . . . H 3 163.195 5.497 112.625 1 107.36 ? O6 NAG 402 B 1 HETATM 14 O O7 NAG . . . H 3 167.051 9.617 118.097 1 109.51 ? O7 NAG 402 B 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #