data_6V7W # _model_server_result.job_id T4nCquhfTUaPAsTR3k8P7A _model_server_result.datetime_utc '2024-10-18 16:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6V7W # _exptl.entry_id 6V7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.39 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V7W _cell.length_a 97.975 _cell.length_b 100.438 _cell.length_c 106.631 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J 1 1 D,E,F,H,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C16 H27 N O4' _chem_comp.formula_weight 297.39 _chem_comp.id OHN _chem_comp.mon_nstd_flag . _chem_comp.name 'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 OHN sing 237 n n C20 C19 OHN sing 238 n n C19 C18 OHN sing 239 n n C18 C17 OHN sing 240 n n C17 C16 OHN sing 241 n n C16 C15 OHN sing 242 n n C15 C14 OHN sing 243 n n C14 C13 OHN sing 244 n n C13 C11 OHN sing 245 n n C11 O12 OHN doub 246 n n C11 C10 OHN sing 247 n n C10 C8 OHN sing 248 n n C8 O9 OHN doub 249 n n C8 N7 OHN sing 250 n n N7 C1 OHN sing 251 n n C1 C5 OHN sing 252 n n C5 C4 OHN sing 253 n n C1 C2 OHN sing 254 n n C2 O6 OHN doub 255 n n C4 OAP OHN sing 256 n n C2 OAP OHN sing 257 n n C21 H211 OHN sing 258 n n C21 H212 OHN sing 259 n n C21 H213 OHN sing 260 n n C20 H201 OHN sing 261 n n C20 H202 OHN sing 262 n n C19 H191 OHN sing 263 n n C19 H192 OHN sing 264 n n C18 H181 OHN sing 265 n n C18 H182 OHN sing 266 n n C17 H171 OHN sing 267 n n C17 H172 OHN sing 268 n n C16 H161 OHN sing 269 n n C16 H162 OHN sing 270 n n C15 H151 OHN sing 271 n n C15 H152 OHN sing 272 n n C14 H141 OHN sing 273 n n C14 H142 OHN sing 274 n n C13 H131 OHN sing 275 n n C13 H132 OHN sing 276 n n C10 H101 OHN sing 277 n n C10 H102 OHN sing 278 n n N7 H7 OHN sing 279 n n C1 H1 OHN sing 280 n n C5 H5C1 OHN sing 281 n n C5 H5C2 OHN sing 282 n n C4 H4C1 OHN sing 283 n n C4 H4C2 OHN sing 284 n n # _atom_sites.entry_id 6V7W _atom_sites.fract_transf_matrix[1][1] 0.010207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 OHN B 1 301 2 OHN OHN . H 3 OHN E 1 301 3 OHN OHN . I 4 HOH B 1 401 19 HOH HOH . J 4 HOH C 1 101 23 HOH HOH . J 4 HOH C 2 102 20 HOH HOH . K 4 HOH E 1 401 1 HOH HOH . K 4 HOH E 2 402 35 HOH HOH . K 4 HOH E 3 403 37 HOH HOH . K 4 HOH E 4 404 34 HOH HOH . K 4 HOH E 5 405 2 HOH HOH . L 4 HOH D 1 101 32 HOH HOH . L 4 HOH D 2 102 8 HOH HOH . M 4 HOH F 1 101 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 OHN . . . G 3 -53.582 10.402 -10.598 1 82.83 ? C21 OHN 301 B 1 HETATM 2 C C20 OHN . . . G 3 -54.123 9.569 -9.438 1 82.83 ? C20 OHN 301 B 1 HETATM 3 C C19 OHN . . . G 3 -54.405 8.144 -9.909 1 82.83 ? C19 OHN 301 B 1 HETATM 4 C C18 OHN . . . G 3 -55.299 7.443 -8.889 1 82.83 ? C18 OHN 301 B 1 HETATM 5 C C17 OHN . . . G 3 -54.667 7.53 -7.501 1 82.83 ? C17 OHN 301 B 1 HETATM 6 C C16 OHN . . . G 3 -55.742 7.285 -6.446 1 82.83 ? C16 OHN 301 B 1 HETATM 7 C C15 OHN . . . G 3 -55.355 7.983 -5.145 1 82.83 ? C15 OHN 301 B 1 HETATM 8 C C14 OHN . . . G 3 -54.516 7.038 -4.288 1 82.83 ? C14 OHN 301 B 1 HETATM 9 C C13 OHN . . . G 3 -54.101 7.735 -2.992 1 82.83 ? C13 OHN 301 B 1 HETATM 10 C C11 OHN . . . G 3 -52.714 8.354 -3.157 1 82.83 ? C11 OHN 301 B 1 HETATM 11 O O12 OHN . . . G 3 -52.417 8.879 -4.176 1 82.83 ? O12 OHN 301 B 1 HETATM 12 C C10 OHN . . . G 3 -51.71 8.308 -2.006 1 82.83 ? C10 OHN 301 B 1 HETATM 13 C C8 OHN . . . G 3 -51.845 9.639 -1.284 1 82.83 ? C8 OHN 301 B 1 HETATM 14 O O9 OHN . . . G 3 -52.219 10.568 -1.911 1 82.83 ? O9 OHN 301 B 1 HETATM 15 N N7 OHN . . . G 3 -51.535 9.781 0.128 1 82.83 ? N7 OHN 301 B 1 HETATM 16 C C1 OHN . . . G 3 -51.724 11.117 0.75 1 82.83 ? C1 OHN 301 B 1 HETATM 17 C C5 OHN . . . G 3 -53.086 11.261 0.888 1 82.83 ? C5 OHN 301 B 1 HETATM 18 C C4 OHN . . . G 3 -53.464 10.287 2.1 1 82.83 ? C4 OHN 301 B 1 HETATM 19 C C2 OHN . . . G 3 -51.348 11.135 2.252 1 82.83 ? C2 OHN 301 B 1 HETATM 20 O O6 OHN . . . G 3 -50.515 11.785 2.783 1 82.83 ? O6 OHN 301 B 1 HETATM 21 O OAP OHN . . . G 3 -52.313 10.193 2.874 1 82.83 ? OAP OHN 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 21 #