data_6V7W
#
_model_server_result.job_id            ZUDhd3FiHTDVccuz2OZUmQ 
_model_server_result.datetime_utc      '2024-10-18 16:22:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6v7w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    6V7W 
#
_exptl.entry_id    6V7W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.39 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6V7W 
_cell.length_a            97.975 
_cell.length_b            100.438 
_cell.length_c            106.631 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6V7W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J 1 1 
D,E,F,H,K,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C16 H27 N O4' 
_chem_comp.formula_weight    297.39 
_chem_comp.id                OHN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 OHN sing 237 n n 
C20 C19 OHN sing 238 n n 
C19 C18 OHN sing 239 n n 
C18 C17 OHN sing 240 n n 
C17 C16 OHN sing 241 n n 
C16 C15 OHN sing 242 n n 
C15 C14 OHN sing 243 n n 
C14 C13 OHN sing 244 n n 
C13 C11 OHN sing 245 n n 
C11 O12 OHN doub 246 n n 
C11 C10 OHN sing 247 n n 
C10 C8 OHN sing 248 n n 
C8 O9 OHN doub 249 n n 
C8 N7 OHN sing 250 n n 
N7 C1 OHN sing 251 n n 
C1 C5 OHN sing 252 n n 
C5 C4 OHN sing 253 n n 
C1 C2 OHN sing 254 n n 
C2 O6 OHN doub 255 n n 
C4 OAP OHN sing 256 n n 
C2 OAP OHN sing 257 n n 
C21 H211 OHN sing 258 n n 
C21 H212 OHN sing 259 n n 
C21 H213 OHN sing 260 n n 
C20 H201 OHN sing 261 n n 
C20 H202 OHN sing 262 n n 
C19 H191 OHN sing 263 n n 
C19 H192 OHN sing 264 n n 
C18 H181 OHN sing 265 n n 
C18 H182 OHN sing 266 n n 
C17 H171 OHN sing 267 n n 
C17 H172 OHN sing 268 n n 
C16 H161 OHN sing 269 n n 
C16 H162 OHN sing 270 n n 
C15 H151 OHN sing 271 n n 
C15 H152 OHN sing 272 n n 
C14 H141 OHN sing 273 n n 
C14 H142 OHN sing 274 n n 
C13 H131 OHN sing 275 n n 
C13 H132 OHN sing 276 n n 
C10 H101 OHN sing 277 n n 
C10 H102 OHN sing 278 n n 
N7 H7 OHN sing 279 n n 
C1 H1 OHN sing 280 n n 
C5 H5C1 OHN sing 281 n n 
C5 H5C2 OHN sing 282 n n 
C4 H4C1 OHN sing 283 n n 
C4 H4C2 OHN sing 284 n n 
#
_atom_sites.entry_id                     6V7W 
_atom_sites.fract_transf_matrix[1][1]    0.010207 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009956 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 OHN B 1 301 2 OHN OHN . 
H 3 OHN E 1 301 3 OHN OHN . 
I 4 HOH B 1 401 19 HOH HOH . 
J 4 HOH C 1 101 23 HOH HOH . 
J 4 HOH C 2 102 20 HOH HOH . 
K 4 HOH E 1 401 1 HOH HOH . 
K 4 HOH E 2 402 35 HOH HOH . 
K 4 HOH E 3 403 37 HOH HOH . 
K 4 HOH E 4 404 34 HOH HOH . 
K 4 HOH E 5 405 2 HOH HOH . 
L 4 HOH D 1 101 32 HOH HOH . 
L 4 HOH D 2 102 8 HOH HOH . 
M 4 HOH F 1 101 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 OHN . . . H 3 -39.852 14.127 -28.883 1 86.17 ? C21 OHN 301 E 1 
HETATM 2 C C20 OHN . . . H 3 -40.52 15.118 -29.833 1 86.17 ? C20 OHN 301 E 1 
HETATM 3 C C19 OHN . . . H 3 -39.638 16.355 -29.985 1 86.17 ? C19 OHN 301 E 1 
HETATM 4 C C18 OHN . . . H 3 -40.225 17.265 -31.062 1 86.17 ? C18 OHN 301 E 1 
HETATM 5 C C17 OHN . . . H 3 -39.128 18.165 -31.623 1 86.17 ? C17 OHN 301 E 1 
HETATM 6 C C16 OHN . . . H 3 -38.04 17.305 -32.263 1 86.17 ? C16 OHN 301 E 1 
HETATM 7 C C15 OHN . . . H 3 -36.696 17.653 -31.628 1 86.17 ? C15 OHN 301 E 1 
HETATM 8 C C14 OHN . . . H 3 -35.574 16.885 -32.32 1 86.17 ? C14 OHN 301 E 1 
HETATM 9 C C13 OHN . . . H 3 -34.247 17.533 -31.939 1 86.17 ? C13 OHN 301 E 1 
HETATM 10 C C11 OHN . . . H 3 -33.137 16.487 -31.888 1 86.17 ? C11 OHN 301 E 1 
HETATM 11 O O12 OHN . . . H 3 -32.189 16.604 -32.589 1 86.17 ? O12 OHN 301 E 1 
HETATM 12 C C10 OHN . . . H 3 -33.222 15.299 -30.933 1 86.17 ? C10 OHN 301 E 1 
HETATM 13 C C8 OHN . . . H 3 -31.794 14.957 -30.511 1 86.17 ? C8 OHN 301 E 1 
HETATM 14 O O9 OHN . . . H 3 -31.425 15.214 -29.418 1 86.17 ? O9 OHN 301 E 1 
HETATM 15 N N7 OHN . . . H 3 -30.878 14.326 -31.44 1 86.17 ? N7 OHN 301 E 1 
HETATM 16 C C1 OHN . . . H 3 -29.492 14.025 -30.986 1 86.17 ? C1 OHN 301 E 1 
HETATM 17 C C5 OHN . . . H 3 -29.272 12.661 -30.883 1 86.17 ? C5 OHN 301 E 1 
HETATM 18 C C4 OHN . . . H 3 -27.702 12.5 -31.123 1 86.17 ? C4 OHN 301 E 1 
HETATM 19 C C2 OHN . . . H 3 -28.473 14.473 -32.071 1 86.17 ? C2 OHN 301 E 1 
HETATM 20 O O6 OHN . . . H 3 -28.588 15.388 -32.815 1 86.17 ? O6 OHN 301 E 1 
HETATM 21 O OAP OHN . . . H 3 -27.333 13.522 -31.991 1 86.17 ? OAP OHN 301 E 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#