data_6V7Y # _model_server_result.job_id xXQBf1wzhygCJSgF4yfKPw _model_server_result.datetime_utc '2024-10-10 16:26:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":103}' # _entry.id 6V7Y # _exptl.entry_id 6V7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6V7Y _cell.length_a 73.27 _cell.length_b 73.27 _cell.length_c 261.077 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG A 405 NAG 4 n D NAG 2 C 2 NAG A 406 NAG 5 n E NAG 1 D 1 NAG A 407 NAG 5 n E NAG 2 D 2 NAG A 408 NAG 5 n E BMA 3 D 3 BMA A 409 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 99 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 258 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 22 F CYS 22 1_555 C SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 E C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 39 A ASN 39 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 105 A ASN 105 1_555 F C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 A ND2 ASN 160 A ASN 160 1_555 I C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale6 E O4 NAG . D NAG 1 1_555 E C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale7 E O4 NAG . D NAG 2 1_555 E C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 503 n n S O2 SO4 doub 504 n n S O3 SO4 sing 505 n n S O4 SO4 sing 506 n n # _atom_sites.entry_id 6V7Y _atom_sites.fract_transf_matrix[1][1] 0.013648 _atom_sites.fract_transf_matrix[1][2] 0.00788 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 401 401 NAG NAG . G 7 SO4 A 1 402 402 SO4 SO4 . H 8 AGH A 1 403 403 AGH AGH . I 6 NAG A 1 404 404 NAG NAG . J 9 CL A 1 405 410 CL CL . K 9 CL A 1 406 411 CL CL . L 9 CL A 1 407 412 CL CL . M 9 CL A 1 408 413 CL CL . N 7 SO4 B 1 101 101 SO4 SO4 . O 7 SO4 B 1 102 102 SO4 SO4 . P 7 SO4 B 1 103 103 SO4 SO4 . Q 7 SO4 B 1 104 104 SO4 SO4 . R 9 CL B 1 105 105 CL CL . S 10 HOH A 1 501 501 HOH HOH . S 10 HOH A 2 502 503 HOH HOH . S 10 HOH A 3 503 564 HOH HOH . S 10 HOH A 4 504 505 HOH HOH . S 10 HOH A 5 505 506 HOH HOH . S 10 HOH A 6 506 507 HOH HOH . S 10 HOH A 7 507 508 HOH HOH . S 10 HOH A 8 508 509 HOH HOH . S 10 HOH A 9 509 510 HOH HOH . S 10 HOH A 10 510 511 HOH HOH . S 10 HOH A 11 511 512 HOH HOH . S 10 HOH A 12 512 502 HOH HOH . S 10 HOH A 13 513 513 HOH HOH . S 10 HOH A 14 514 515 HOH HOH . S 10 HOH A 15 515 516 HOH HOH . S 10 HOH A 16 516 517 HOH HOH . S 10 HOH A 17 517 518 HOH HOH . S 10 HOH A 18 518 519 HOH HOH . S 10 HOH A 19 519 520 HOH HOH . S 10 HOH A 20 520 521 HOH HOH . S 10 HOH A 21 521 522 HOH HOH . S 10 HOH A 22 522 523 HOH HOH . S 10 HOH A 23 523 524 HOH HOH . S 10 HOH A 24 524 525 HOH HOH . S 10 HOH A 25 525 526 HOH HOH . S 10 HOH A 26 526 527 HOH HOH . S 10 HOH A 27 527 528 HOH HOH . S 10 HOH A 28 528 529 HOH HOH . S 10 HOH A 29 529 530 HOH HOH . S 10 HOH A 30 530 531 HOH HOH . S 10 HOH A 31 531 532 HOH HOH . S 10 HOH A 32 532 533 HOH HOH . S 10 HOH A 33 533 534 HOH HOH . S 10 HOH A 34 534 535 HOH HOH . S 10 HOH A 35 535 536 HOH HOH . S 10 HOH A 36 536 537 HOH HOH . S 10 HOH A 37 537 538 HOH HOH . S 10 HOH A 38 538 539 HOH HOH . S 10 HOH A 39 539 540 HOH HOH . S 10 HOH A 40 540 541 HOH HOH . S 10 HOH A 41 541 542 HOH HOH . S 10 HOH A 42 542 543 HOH HOH . S 10 HOH A 43 543 544 HOH HOH . S 10 HOH A 44 544 545 HOH HOH . S 10 HOH A 45 545 546 HOH HOH . S 10 HOH A 46 546 547 HOH HOH . S 10 HOH A 47 547 548 HOH HOH . S 10 HOH A 48 548 549 HOH HOH . S 10 HOH A 49 549 550 HOH HOH . S 10 HOH A 50 550 551 HOH HOH . S 10 HOH A 51 551 553 HOH HOH . S 10 HOH A 52 552 554 HOH HOH . S 10 HOH A 53 553 555 HOH HOH . S 10 HOH A 54 554 556 HOH HOH . S 10 HOH A 55 555 557 HOH HOH . S 10 HOH A 56 556 552 HOH HOH . S 10 HOH A 57 557 558 HOH HOH . S 10 HOH A 58 558 559 HOH HOH . S 10 HOH A 59 559 560 HOH HOH . S 10 HOH A 60 560 561 HOH HOH . S 10 HOH A 61 561 562 HOH HOH . S 10 HOH A 62 562 563 HOH HOH . S 10 HOH A 63 563 565 HOH HOH . S 10 HOH A 64 564 567 HOH HOH . S 10 HOH A 65 565 504 HOH HOH . S 10 HOH A 66 566 568 HOH HOH . S 10 HOH A 67 567 569 HOH HOH . S 10 HOH A 68 568 570 HOH HOH . S 10 HOH A 69 569 571 HOH HOH . S 10 HOH A 70 570 572 HOH HOH . S 10 HOH A 71 571 573 HOH HOH . S 10 HOH A 72 572 574 HOH HOH . S 10 HOH A 73 573 575 HOH HOH . S 10 HOH A 74 574 577 HOH HOH . S 10 HOH A 75 575 578 HOH HOH . S 10 HOH A 76 576 579 HOH HOH . S 10 HOH A 77 577 580 HOH HOH . S 10 HOH A 78 578 581 HOH HOH . S 10 HOH A 79 579 576 HOH HOH . S 10 HOH A 80 580 582 HOH HOH . S 10 HOH A 81 581 583 HOH HOH . S 10 HOH A 82 582 584 HOH HOH . S 10 HOH A 83 583 585 HOH HOH . S 10 HOH A 84 584 586 HOH HOH . S 10 HOH A 85 585 587 HOH HOH . S 10 HOH A 86 586 588 HOH HOH . S 10 HOH A 87 587 589 HOH HOH . S 10 HOH A 88 588 590 HOH HOH . S 10 HOH A 89 589 591 HOH HOH . S 10 HOH A 90 590 592 HOH HOH . S 10 HOH A 91 591 593 HOH HOH . S 10 HOH A 92 592 594 HOH HOH . S 10 HOH A 93 593 595 HOH HOH . S 10 HOH A 94 594 596 HOH HOH . S 10 HOH A 95 595 597 HOH HOH . S 10 HOH A 96 596 599 HOH HOH . S 10 HOH A 97 597 600 HOH HOH . S 10 HOH A 98 598 601 HOH HOH . S 10 HOH A 99 599 602 HOH HOH . S 10 HOH A 100 600 603 HOH HOH . S 10 HOH A 101 601 604 HOH HOH . S 10 HOH A 102 602 605 HOH HOH . S 10 HOH A 103 603 606 HOH HOH . S 10 HOH A 104 604 607 HOH HOH . S 10 HOH A 105 605 608 HOH HOH . S 10 HOH A 106 606 609 HOH HOH . S 10 HOH A 107 607 610 HOH HOH . S 10 HOH A 108 608 611 HOH HOH . S 10 HOH A 109 609 616 HOH HOH . S 10 HOH A 110 610 598 HOH HOH . S 10 HOH A 111 611 514 HOH HOH . T 10 HOH B 1 201 201 HOH HOH . T 10 HOH B 2 202 202 HOH HOH . T 10 HOH B 3 203 203 HOH HOH . T 10 HOH B 4 204 205 HOH HOH . T 10 HOH B 5 205 206 HOH HOH . T 10 HOH B 6 206 207 HOH HOH . T 10 HOH B 7 207 208 HOH HOH . T 10 HOH B 8 208 209 HOH HOH . T 10 HOH B 9 209 210 HOH HOH . T 10 HOH B 10 210 211 HOH HOH . T 10 HOH B 11 211 212 HOH HOH . T 10 HOH B 12 212 213 HOH HOH . T 10 HOH B 13 213 214 HOH HOH . T 10 HOH B 14 214 215 HOH HOH . T 10 HOH B 15 215 216 HOH HOH . T 10 HOH B 16 216 217 HOH HOH . T 10 HOH B 17 217 218 HOH HOH . T 10 HOH B 18 218 219 HOH HOH . T 10 HOH B 19 219 220 HOH HOH . T 10 HOH B 20 220 221 HOH HOH . T 10 HOH B 21 221 222 HOH HOH . T 10 HOH B 22 222 223 HOH HOH . T 10 HOH B 23 223 224 HOH HOH . T 10 HOH B 24 224 225 HOH HOH . T 10 HOH B 25 225 226 HOH HOH . T 10 HOH B 26 226 227 HOH HOH . T 10 HOH B 27 227 228 HOH HOH . T 10 HOH B 28 228 229 HOH HOH . T 10 HOH B 29 229 230 HOH HOH . T 10 HOH B 30 230 231 HOH HOH . T 10 HOH B 31 231 232 HOH HOH . T 10 HOH B 32 232 233 HOH HOH . T 10 HOH B 33 233 234 HOH HOH . T 10 HOH B 34 234 235 HOH HOH . T 10 HOH B 35 235 236 HOH HOH . T 10 HOH B 36 236 237 HOH HOH . T 10 HOH B 37 237 238 HOH HOH . T 10 HOH B 38 238 239 HOH HOH . T 10 HOH B 39 239 240 HOH HOH . T 10 HOH B 40 240 241 HOH HOH . T 10 HOH B 41 241 242 HOH HOH . T 10 HOH B 42 242 243 HOH HOH . T 10 HOH B 43 243 244 HOH HOH . T 10 HOH B 44 244 566 HOH HOH . T 10 HOH B 45 245 245 HOH HOH . U 10 HOH F 1 201 201 HOH HOH . U 10 HOH F 2 202 202 HOH HOH . U 10 HOH F 3 203 203 HOH HOH . U 10 HOH F 4 204 204 HOH HOH . U 10 HOH F 5 205 205 HOH HOH . U 10 HOH F 6 206 206 HOH HOH . U 10 HOH F 7 207 207 HOH HOH . U 10 HOH F 8 208 208 HOH HOH . U 10 HOH F 9 209 209 HOH HOH . U 10 HOH F 10 210 210 HOH HOH . U 10 HOH F 11 211 211 HOH HOH . U 10 HOH F 12 212 212 HOH HOH . U 10 HOH F 13 213 213 HOH HOH . U 10 HOH F 14 214 214 HOH HOH . U 10 HOH F 15 215 215 HOH HOH . U 10 HOH F 16 216 216 HOH HOH . U 10 HOH F 17 217 217 HOH HOH . U 10 HOH F 18 218 218 HOH HOH . U 10 HOH F 19 219 219 HOH HOH . U 10 HOH F 20 220 220 HOH HOH . U 10 HOH F 21 221 221 HOH HOH . U 10 HOH F 22 222 222 HOH HOH . U 10 HOH F 23 223 223 HOH HOH . U 10 HOH F 24 224 224 HOH HOH . U 10 HOH F 25 225 225 HOH HOH . U 10 HOH F 26 226 226 HOH HOH . U 10 HOH F 27 227 227 HOH HOH . U 10 HOH F 28 228 228 HOH HOH . U 10 HOH F 29 229 229 HOH HOH . U 10 HOH F 30 230 230 HOH HOH . U 10 HOH F 31 231 231 HOH HOH . U 10 HOH F 32 232 232 HOH HOH . U 10 HOH F 33 233 233 HOH HOH . U 10 HOH F 34 234 234 HOH HOH . U 10 HOH F 35 235 235 HOH HOH . U 10 HOH F 36 236 236 HOH HOH . U 10 HOH F 37 237 237 HOH HOH . U 10 HOH F 38 238 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . P 7 -34.031 57.76 56.279 1 127.99 ? S SO4 103 B 1 HETATM 2 O O1 SO4 . . . P 7 -33.855 58.887 55.358 1 128.73 ? O1 SO4 103 B 1 HETATM 3 O O2 SO4 . . . P 7 -33.199 56.635 55.805 1 125.92 ? O2 SO4 103 B 1 HETATM 4 O O3 SO4 . . . P 7 -35.452 57.39 56.338 1 126.65 ? O3 SO4 103 B 1 HETATM 5 O O4 SO4 . . . P 7 -33.611 58.174 57.624 1 129.4 ? O4 SO4 103 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #