data_6V8K # _model_server_result.job_id DrHrz2bDVQ0L1rqKNgdBew _model_server_result.datetime_utc '2024-10-19 16:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1703}' # _entry.id 6V8K # _exptl.entry_id 6V8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V8K _cell.length_a 60.669 _cell.length_b 60.669 _cell.length_c 100.647 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 169 n n S C1 DMS sing 170 n n S C2 DMS sing 171 n n C1 H11 DMS sing 172 n n C1 H12 DMS sing 173 n n C1 H13 DMS sing 174 n n C2 H21 DMS sing 175 n n C2 H22 DMS sing 176 n n C2 H23 DMS sing 177 n n # _atom_sites.entry_id 6V8K _atom_sites.fract_transf_matrix[1][1] 0.016483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 1701 2 COA COA . C 3 QS4 A 1 1702 1 QS4 DRG . D 4 DMS A 1 1703 1 DMS DMS . E 5 HOH A 1 1801 79 HOH HOH . E 5 HOH A 2 1802 83 HOH HOH . E 5 HOH A 3 1803 22 HOH HOH . E 5 HOH A 4 1804 66 HOH HOH . E 5 HOH A 5 1805 41 HOH HOH . E 5 HOH A 6 1806 40 HOH HOH . E 5 HOH A 7 1807 18 HOH HOH . E 5 HOH A 8 1808 88 HOH HOH . E 5 HOH A 9 1809 71 HOH HOH . E 5 HOH A 10 1810 84 HOH HOH . E 5 HOH A 11 1811 14 HOH HOH . E 5 HOH A 12 1812 91 HOH HOH . E 5 HOH A 13 1813 70 HOH HOH . E 5 HOH A 14 1814 69 HOH HOH . E 5 HOH A 15 1815 27 HOH HOH . E 5 HOH A 16 1816 2 HOH HOH . E 5 HOH A 17 1817 12 HOH HOH . E 5 HOH A 18 1818 8 HOH HOH . E 5 HOH A 19 1819 87 HOH HOH . E 5 HOH A 20 1820 49 HOH HOH . E 5 HOH A 21 1821 20 HOH HOH . E 5 HOH A 22 1822 46 HOH HOH . E 5 HOH A 23 1823 63 HOH HOH . E 5 HOH A 24 1824 82 HOH HOH . E 5 HOH A 25 1825 16 HOH HOH . E 5 HOH A 26 1826 47 HOH HOH . E 5 HOH A 27 1827 48 HOH HOH . E 5 HOH A 28 1828 80 HOH HOH . E 5 HOH A 29 1829 36 HOH HOH . E 5 HOH A 30 1830 34 HOH HOH . E 5 HOH A 31 1831 5 HOH HOH . E 5 HOH A 32 1832 19 HOH HOH . E 5 HOH A 33 1833 59 HOH HOH . E 5 HOH A 34 1834 54 HOH HOH . E 5 HOH A 35 1835 39 HOH HOH . E 5 HOH A 36 1836 3 HOH HOH . E 5 HOH A 37 1837 9 HOH HOH . E 5 HOH A 38 1838 31 HOH HOH . E 5 HOH A 39 1839 4 HOH HOH . E 5 HOH A 40 1840 81 HOH HOH . E 5 HOH A 41 1841 32 HOH HOH . E 5 HOH A 42 1842 33 HOH HOH . E 5 HOH A 43 1843 44 HOH HOH . E 5 HOH A 44 1844 37 HOH HOH . E 5 HOH A 45 1845 76 HOH HOH . E 5 HOH A 46 1846 10 HOH HOH . E 5 HOH A 47 1847 1 HOH HOH . E 5 HOH A 48 1848 23 HOH HOH . E 5 HOH A 49 1849 92 HOH HOH . E 5 HOH A 50 1850 65 HOH HOH . E 5 HOH A 51 1851 55 HOH HOH . E 5 HOH A 52 1852 25 HOH HOH . E 5 HOH A 53 1853 13 HOH HOH . E 5 HOH A 54 1854 11 HOH HOH . E 5 HOH A 55 1855 26 HOH HOH . E 5 HOH A 56 1856 45 HOH HOH . E 5 HOH A 57 1857 15 HOH HOH . E 5 HOH A 58 1858 29 HOH HOH . E 5 HOH A 59 1859 90 HOH HOH . E 5 HOH A 60 1860 64 HOH HOH . E 5 HOH A 61 1861 89 HOH HOH . E 5 HOH A 62 1862 35 HOH HOH . E 5 HOH A 63 1863 72 HOH HOH . E 5 HOH A 64 1864 67 HOH HOH . E 5 HOH A 65 1865 61 HOH HOH . E 5 HOH A 66 1866 74 HOH HOH . E 5 HOH A 67 1867 75 HOH HOH . E 5 HOH A 68 1868 51 HOH HOH . E 5 HOH A 69 1869 6 HOH HOH . E 5 HOH A 70 1870 53 HOH HOH . E 5 HOH A 71 1871 17 HOH HOH . E 5 HOH A 72 1872 43 HOH HOH . E 5 HOH A 73 1873 86 HOH HOH . E 5 HOH A 74 1874 21 HOH HOH . E 5 HOH A 75 1875 62 HOH HOH . E 5 HOH A 76 1876 68 HOH HOH . E 5 HOH A 77 1877 7 HOH HOH . E 5 HOH A 78 1878 78 HOH HOH . E 5 HOH A 79 1879 60 HOH HOH . E 5 HOH A 80 1880 28 HOH HOH . E 5 HOH A 81 1881 38 HOH HOH . E 5 HOH A 82 1882 56 HOH HOH . E 5 HOH A 83 1883 58 HOH HOH . E 5 HOH A 84 1884 30 HOH HOH . E 5 HOH A 85 1885 42 HOH HOH . E 5 HOH A 86 1886 77 HOH HOH . E 5 HOH A 87 1887 85 HOH HOH . E 5 HOH A 88 1888 57 HOH HOH . E 5 HOH A 89 1889 24 HOH HOH . E 5 HOH A 90 1890 50 HOH HOH . E 5 HOH A 91 1891 73 HOH HOH . E 5 HOH A 92 1892 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 83.457 25.986 -16.839 1 69.08 ? S DMS 1703 A 1 HETATM 2 O O DMS . . . D 4 82.329 25.676 -15.898 1 55.88 ? O DMS 1703 A 1 HETATM 3 C C1 DMS . . . D 4 82.991 27.113 -18.031 1 65.5 ? C1 DMS 1703 A 1 HETATM 4 C C2 DMS . . . D 4 84.561 26.965 -15.954 1 67.32 ? C2 DMS 1703 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #