data_6V8N # _model_server_result.job_id Xz9WzGAWgupjstnt_d--QQ _model_server_result.datetime_utc '2024-12-03 08:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1704}' # _entry.id 6V8N # _exptl.entry_id 6V8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.535 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-{[(2S)-2-(4-cyanophenyl)propyl]amino}-N-[5-(1-methyl-1H-pyrazol-4-yl)pyridin-2-yl]-2-phenylacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V8N _cell.length_a 45.65 _cell.length_b 104.82 _cell.length_c 169.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 50 A VAL 1335 1_555 A N ALY 51 A ALY 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C ALY 51 A ALY 1336 1_555 A N PRO 52 A PRO 1337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C27 H26 N6 O' _chem_comp.formula_weight 450.535 _chem_comp.id QS1 _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-{[(2S)-2-(4-cyanophenyl)propyl]amino}-N-[5-(1-methyl-1H-pyrazol-4-yl)pyridin-2-yl]-2-phenylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QS1 sing 305 n n C2 C3 QS1 sing 306 n n C2 C10 QS1 sing 307 n n C3 C4 QS1 doub 308 n y C3 C9 QS1 sing 309 n y C4 C5 QS1 sing 310 n y C9 C8 QS1 doub 311 n y C5 C6 QS1 doub 312 n y C10 N2 QS1 sing 313 n n C8 C6 QS1 sing 314 n y C6 C7 QS1 sing 315 n n C7 N1 QS1 trip 316 n n N2 C11 QS1 sing 317 n n C11 C12 QS1 sing 318 n n C11 C18 QS1 sing 319 n n C13 C12 QS1 doub 320 n y C13 C14 QS1 sing 321 n y C12 C17 QS1 sing 322 n y C17 C16 QS1 doub 323 n y C14 C15 QS1 doub 324 n y C16 C15 QS1 sing 325 n y C18 O1 QS1 doub 326 n n C18 N3 QS1 sing 327 n n N3 C19 QS1 sing 328 n n C19 C27 QS1 doub 329 n y C19 N4 QS1 sing 330 n y C27 C26 QS1 sing 331 n y N4 C20 QS1 doub 332 n y C26 C21 QS1 doub 333 n y C20 C21 QS1 sing 334 n y C21 C22 QS1 sing 335 n n C22 C23 QS1 doub 336 n y C22 C25 QS1 sing 337 n y C23 N5 QS1 sing 338 n y C25 N6 QS1 doub 339 n y N5 N6 QS1 sing 340 n y N5 C24 QS1 sing 341 n n C4 H1 QS1 sing 342 n n C14 H2 QS1 sing 343 n n C5 H3 QS1 sing 344 n n C11 H4 QS1 sing 345 n n C8 H5 QS1 sing 346 n n C9 H6 QS1 sing 347 n n C10 H7 QS1 sing 348 n n C10 H8 QS1 sing 349 n n C13 H9 QS1 sing 350 n n N2 H10 QS1 sing 351 n n N3 H12 QS1 sing 352 n n C1 H13 QS1 sing 353 n n C1 H14 QS1 sing 354 n n C1 H15 QS1 sing 355 n n C2 H16 QS1 sing 356 n n C15 H17 QS1 sing 357 n n C16 H18 QS1 sing 358 n n C17 H19 QS1 sing 359 n n C20 H20 QS1 sing 360 n n C23 H21 QS1 sing 361 n n C24 H22 QS1 sing 362 n n C24 H23 QS1 sing 363 n n C24 H24 QS1 sing 364 n n C25 H25 QS1 sing 365 n n C26 H26 QS1 sing 366 n n C27 H27 QS1 sing 367 n n # _atom_sites.entry_id 6V8N _atom_sites.fract_transf_matrix[1][1] 0.021906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1701 2 SO4 SO4 . C 2 SO4 A 1 1702 3 SO4 SO4 . D 3 CL A 1 1703 1 CL CL . E 4 QS1 A 1 1704 1 QS1 DRG . F 5 HOH A 1 1801 9 HOH HOH . F 5 HOH A 2 1802 4 HOH HOH . F 5 HOH A 3 1803 15 HOH HOH . F 5 HOH A 4 1804 27 HOH HOH . F 5 HOH A 5 1805 3 HOH HOH . F 5 HOH A 6 1806 13 HOH HOH . F 5 HOH A 7 1807 30 HOH HOH . F 5 HOH A 8 1808 5 HOH HOH . F 5 HOH A 9 1809 14 HOH HOH . F 5 HOH A 10 1810 26 HOH HOH . F 5 HOH A 11 1811 17 HOH HOH . F 5 HOH A 12 1812 18 HOH HOH . F 5 HOH A 13 1813 23 HOH HOH . F 5 HOH A 14 1814 2 HOH HOH . F 5 HOH A 15 1815 6 HOH HOH . F 5 HOH A 16 1816 1 HOH HOH . F 5 HOH A 17 1817 12 HOH HOH . F 5 HOH A 18 1818 28 HOH HOH . F 5 HOH A 19 1819 19 HOH HOH . F 5 HOH A 20 1820 10 HOH HOH . F 5 HOH A 21 1821 21 HOH HOH . F 5 HOH A 22 1822 20 HOH HOH . F 5 HOH A 23 1823 8 HOH HOH . F 5 HOH A 24 1824 29 HOH HOH . F 5 HOH A 25 1825 25 HOH HOH . F 5 HOH A 26 1826 11 HOH HOH . F 5 HOH A 27 1827 31 HOH HOH . F 5 HOH A 28 1828 16 HOH HOH . F 5 HOH A 29 1829 7 HOH HOH . F 5 HOH A 30 1830 32 HOH HOH . F 5 HOH A 31 1831 24 HOH HOH . F 5 HOH A 32 1832 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 QS1 . . . E 4 32.558 12.516 -19.209 1 37.01 ? C4 QS1 1704 A 1 HETATM 2 C C14 QS1 . . . E 4 28.924 11.304 -15.573 1 37.09 ? C14 QS1 1704 A 1 HETATM 3 C C5 QS1 . . . E 4 33.121 13.679 -18.79 1 37.49 ? C5 QS1 1704 A 1 HETATM 4 C C6 QS1 . . . E 4 34.474 13.726 -18.51 1 39.94 ? C6 QS1 1704 A 1 HETATM 5 C C11 QS1 . . . E 4 31.952 9.097 -16.198 1 44.36 ? C11 QS1 1704 A 1 HETATM 6 C C7 QS1 . . . E 4 35.04 14.963 -18.046 1 42.45 ? C7 QS1 1704 A 1 HETATM 7 C C8 QS1 . . . E 4 35.261 12.595 -18.663 1 39.22 ? C8 QS1 1704 A 1 HETATM 8 C C9 QS1 . . . E 4 34.675 11.418 -19.093 1 39.39 ? C9 QS1 1704 A 1 HETATM 9 C C10 QS1 . . . E 4 31.798 9.545 -18.677 1 42.75 ? C10 QS1 1704 A 1 HETATM 10 C C12 QS1 . . . E 4 31.084 10.295 -15.848 1 36.77 ? C12 QS1 1704 A 1 HETATM 11 C C13 QS1 . . . E 4 29.707 10.195 -15.857 1 37.41 ? C13 QS1 1704 A 1 HETATM 12 N N1 QS1 . . . E 4 35.438 15.969 -17.684 1 52.02 ? N1 QS1 1704 A 1 HETATM 13 N N2 QS1 . . . E 4 32.643 9.342 -17.49 1 40.85 ? N2 QS1 1704 A 1 HETATM 14 C C3 QS1 . . . E 4 33.316 11.372 -19.387 1 38.63 ? C3 QS1 1704 A 1 HETATM 15 N N3 QS1 . . . E 4 32.502 7.9 -14.169 1 48.33 ? N3 QS1 1704 A 1 HETATM 16 C C1 QS1 . . . E 4 31.794 10.321 -21.091 1 44.43 ? C1 QS1 1704 A 1 HETATM 17 C C2 QS1 . . . E 4 32.636 10.099 -19.834 1 42.7 ? C2 QS1 1704 A 1 HETATM 18 C C15 QS1 . . . E 4 29.511 12.518 -15.323 1 38.29 ? C15 QS1 1704 A 1 HETATM 19 C C16 QS1 . . . E 4 30.881 12.629 -15.314 1 36.41 ? C16 QS1 1704 A 1 HETATM 20 C C17 QS1 . . . E 4 31.659 11.522 -15.577 1 35.54 ? C17 QS1 1704 A 1 HETATM 21 C C18 QS1 . . . E 4 32.925 8.81 -15.062 1 45.76 ? C18 QS1 1704 A 1 HETATM 22 C C19 QS1 . . . E 4 33.128 7.427 -13.005 1 54.23 ? C19 QS1 1704 A 1 HETATM 23 N N4 QS1 . . . E 4 32.259 6.868 -12.148 1 53.34 ? N4 QS1 1704 A 1 HETATM 24 C C20 QS1 . . . E 4 32.726 6.356 -11.008 1 56.81 ? C20 QS1 1704 A 1 HETATM 25 C C21 QS1 . . . E 4 34.066 6.411 -10.648 1 62.58 ? C21 QS1 1704 A 1 HETATM 26 C C22 QS1 . . . E 4 34.521 5.769 -9.403 1 68.47 ? C22 QS1 1704 A 1 HETATM 27 C C23 QS1 . . . E 4 35.83 5.487 -9.071 1 66.77 ? C23 QS1 1704 A 1 HETATM 28 N N5 QS1 . . . E 4 35.786 4.814 -7.896 1 73.05 ? N5 QS1 1704 A 1 HETATM 29 C C24 QS1 . . . E 4 36.903 4.312 -7.101 1 74.68 ? C24 QS1 1704 A 1 HETATM 30 N N6 QS1 . . . E 4 34.501 4.613 -7.463 1 73.12 ? N6 QS1 1704 A 1 HETATM 31 C C25 QS1 . . . E 4 33.743 5.176 -8.388 1 72.08 ? C25 QS1 1704 A 1 HETATM 32 C C26 QS1 . . . E 4 34.962 6.974 -11.556 1 58.05 ? C26 QS1 1704 A 1 HETATM 33 C C27 QS1 . . . E 4 34.498 7.496 -12.75 1 56.23 ? C27 QS1 1704 A 1 HETATM 34 O O1 QS1 . . . E 4 33.998 9.392 -15.002 1 53.32 ? O1 QS1 1704 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #