data_6V9E # _model_server_result.job_id GmR2kuEIi1TaEMbnArp5Dg _model_server_result.datetime_utc '2024-11-16 06:55:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6V9E # _exptl.entry_id 6V9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(6-amino-9H-purin-9-yl)ethyl]-5-hydroxy-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V9E _cell.length_a 91.052 _cell.length_b 91.052 _cell.length_c 134.042 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O04 QQP . A QQP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 C MN MN . A MN 202 1_555 D O20 QQP . A QQP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc9 C MN MN . A MN 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 C MN MN . A MN 202 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'C19 H15 F3 N8 O3' _chem_comp.formula_weight 460.369 _chem_comp.id QQP _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(6-amino-9H-purin-9-yl)ethyl]-5-hydroxy-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N17 QQP doub 277 n y C16 N15 QQP sing 278 n y N17 C18 QQP sing 279 n y N15 C14 QQP doub 280 n y C18 N19 QQP sing 281 n n C18 C13 QQP doub 282 n y C14 C13 QQP sing 283 n y C14 N10 QQP sing 284 n y C13 N12 QQP sing 285 n y N10 C09 QQP sing 286 n n N10 C11 QQP sing 287 n y C09 C08 QQP sing 288 n n N12 C11 QQP doub 289 n y C26 C27 QQP doub 290 n y C26 C25 QQP sing 291 n y F32 C29 QQP sing 292 n n C27 C28 QQP sing 293 n y F31 C29 QQP sing 294 n n C08 N07 QQP sing 295 n n C25 C24 QQP doub 296 n y C28 C29 QQP sing 297 n n C28 C23 QQP doub 298 n y C29 F30 QQP sing 299 n n N07 C06 QQP sing 300 n n C24 C23 QQP sing 301 n y C23 C22 QQP sing 302 n n N21 C22 QQP doub 303 n n N21 C05 QQP sing 304 n n C06 C05 QQP sing 305 n n C06 O20 QQP doub 306 n n C22 N33 QQP sing 307 n n C05 C03 QQP doub 308 n n N33 C02 QQP sing 309 n n C03 C02 QQP sing 310 n n C03 O04 QQP sing 311 n n C02 O01 QQP doub 312 n n C16 H1 QQP sing 313 n n C24 H2 QQP sing 314 n n C25 H3 QQP sing 315 n n C27 H4 QQP sing 316 n n N33 H5 QQP sing 317 n n C08 H6 QQP sing 318 n n C08 H7 QQP sing 319 n n C09 H8 QQP sing 320 n n C09 H9 QQP sing 321 n n C11 H10 QQP sing 322 n n C26 H11 QQP sing 323 n n N07 H12 QQP sing 324 n n N19 H13 QQP sing 325 n n N19 H14 QQP sing 326 n n O04 H15 QQP sing 327 n n # _atom_sites.entry_id 6V9E _atom_sites.fract_transf_matrix[1][1] 0.010983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 QQP A 1 203 301 QQP 632 . E 4 Y24 A 1 204 401 Y24 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 6 HOH A 1 301 43 HOH HOH . G 6 HOH A 2 302 52 HOH HOH . G 6 HOH A 3 303 24 HOH HOH . G 6 HOH A 4 304 54 HOH HOH . G 6 HOH A 5 305 26 HOH HOH . G 6 HOH A 6 306 25 HOH HOH . G 6 HOH A 7 307 13 HOH HOH . G 6 HOH A 8 308 27 HOH HOH . G 6 HOH A 9 309 51 HOH HOH . G 6 HOH A 10 310 40 HOH HOH . G 6 HOH A 11 311 6 HOH HOH . G 6 HOH A 12 312 7 HOH HOH . G 6 HOH A 13 313 38 HOH HOH . G 6 HOH A 14 314 1 HOH HOH . G 6 HOH A 15 315 17 HOH HOH . G 6 HOH A 16 316 39 HOH HOH . G 6 HOH A 17 317 2 HOH HOH . G 6 HOH A 18 318 23 HOH HOH . G 6 HOH A 19 319 14 HOH HOH . G 6 HOH A 20 320 15 HOH HOH . G 6 HOH A 21 321 46 HOH HOH . G 6 HOH A 22 322 19 HOH HOH . G 6 HOH A 23 323 5 HOH HOH . G 6 HOH A 24 324 47 HOH HOH . G 6 HOH A 25 325 37 HOH HOH . G 6 HOH A 26 326 29 HOH HOH . G 6 HOH A 27 327 53 HOH HOH . G 6 HOH A 28 328 18 HOH HOH . G 6 HOH A 29 329 50 HOH HOH . G 6 HOH A 30 330 42 HOH HOH . G 6 HOH A 31 331 33 HOH HOH . G 6 HOH A 32 332 48 HOH HOH . G 6 HOH A 33 333 41 HOH HOH . G 6 HOH A 34 334 8 HOH HOH . G 6 HOH A 35 335 10 HOH HOH . G 6 HOH A 36 336 31 HOH HOH . G 6 HOH A 37 337 36 HOH HOH . G 6 HOH A 38 338 30 HOH HOH . G 6 HOH A 39 339 28 HOH HOH . G 6 HOH A 40 340 22 HOH HOH . G 6 HOH A 41 341 34 HOH HOH . G 6 HOH A 42 342 35 HOH HOH . G 6 HOH A 43 343 32 HOH HOH . G 6 HOH A 44 344 45 HOH HOH . G 6 HOH A 45 345 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 QQP . . . D 3 10.443 43.447 -12.715 1 139.72 ? N12 QQP 203 A 1 HETATM 2 C C13 QQP . . . D 3 10.937 42.229 -12.383 1 132.7 ? C13 QQP 203 A 1 HETATM 3 C C16 QQP . . . D 3 12.438 40.044 -11.878 1 130.9 ? C16 QQP 203 A 1 HETATM 4 C C18 QQP . . . D 3 10.357 41.019 -11.899 1 127.05 ? C18 QQP 203 A 1 HETATM 5 C C22 QQP . . . D 3 14.502 39.286 -16.899 1 100.62 ? C22 QQP 203 A 1 HETATM 6 C C24 QQP . . . D 3 12.094 38.707 -16.56 1 111.81 ? C24 QQP 203 A 1 HETATM 7 C C25 QQP . . . D 3 11.089 37.958 -15.973 1 113.95 ? C25 QQP 203 A 1 HETATM 8 C C27 QQP . . . D 3 12.758 36.691 -14.769 1 115.58 ? C27 QQP 203 A 1 HETATM 9 C C29 QQP . . . D 3 15.269 37.176 -15.03 1 114.36 ? C29 QQP 203 A 1 HETATM 10 N N33 QQP . . . D 3 15.544 38.779 -17.84 1 81.73 ? N33 QQP 203 A 1 HETATM 11 C C02 QQP . . . D 3 16.534 39.708 -18.38 1 77.18 ? C02 QQP 203 A 1 HETATM 12 C C03 QQP . . . D 3 16.475 41.141 -17.958 1 85.31 ? C03 QQP 203 A 1 HETATM 13 C C05 QQP . . . D 3 15.426 41.601 -17.014 1 86.86 ? C05 QQP 203 A 1 HETATM 14 C C06 QQP . . . D 3 15.26 43.016 -16.526 1 90.51 ? C06 QQP 203 A 1 HETATM 15 C C08 QQP . . . D 3 13.963 44.362 -14.865 1 112.78 ? C08 QQP 203 A 1 HETATM 16 C C09 QQP . . . D 3 13.898 44.012 -13.392 1 128.59 ? C09 QQP 203 A 1 HETATM 17 C C11 QQP . . . D 3 11.452 44.221 -13.117 1 133.66 ? C11 QQP 203 A 1 HETATM 18 C C14 QQP . . . D 3 12.287 42.256 -12.587 1 129.58 ? C14 QQP 203 A 1 HETATM 19 C C23 QQP . . . D 3 13.422 38.432 -16.26 1 112.29 ? C23 QQP 203 A 1 HETATM 20 C C26 QQP . . . D 3 11.426 36.95 -15.078 1 113.9 ? C26 QQP 203 A 1 HETATM 21 C C28 QQP . . . D 3 13.776 37.439 -15.351 1 119.22 ? C28 QQP 203 A 1 HETATM 22 F F30 QQP . . . D 3 15.889 36.694 -16.151 1 115.18 ? F30 QQP 203 A 1 HETATM 23 F F31 QQP . . . D 3 15.883 38.331 -14.628 1 99.85 ? F31 QQP 203 A 1 HETATM 24 F F32 QQP . . . D 3 15.436 36.252 -14.034 1 100.18 ? F32 QQP 203 A 1 HETATM 25 N N07 QQP . . . D 3 14.287 43.115 -15.48 1 88.84 ? N07 QQP 203 A 1 HETATM 26 N N10 QQP . . . D 3 12.58 43.509 -13.048 1 130.22 ? N10 QQP 203 A 1 HETATM 27 N N15 QQP . . . D 3 13.022 41.141 -12.325 1 127.56 ? N15 QQP 203 A 1 HETATM 28 N N17 QQP . . . D 3 11.129 39.97 -11.666 1 128.32 ? N17 QQP 203 A 1 HETATM 29 N N19 QQP . . . D 3 8.926 40.932 -11.665 1 127.65 ? N19 QQP 203 A 1 HETATM 30 N N21 QQP . . . D 3 14.457 40.694 -16.487 1 94.55 ? N21 QQP 203 A 1 HETATM 31 O O01 QQP . . . D 3 17.406 39.333 -19.112 1 68.31 ? O01 QQP 203 A 1 HETATM 32 O O04 QQP . . . D 3 17.395 42.069 -18.44 1 88.28 ? O04 QQP 203 A 1 HETATM 33 O O20 QQP . . . D 3 15.843 43.948 -16.963 1 94.5 ? O20 QQP 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 33 #