data_6V9V # _model_server_result.job_id qxAH_TDm93PiTRgGz1jOmQ _model_server_result.datetime_utc '2024-11-22 22:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6v9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1202}' # _entry.id 6V9V # _exptl.entry_id 6V9V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6V9V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 621 A CYS 621 1_555 E C17 QT4 . A QT4 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale2 B SG CYS 621 B CYS 621 1_555 G C17 QT4 . B QT4 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale3 C SG CYS 621 D CYS 621 1_555 I C17 QT4 . D QT4 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale4 D SG CYS 621 C CYS 621 1_555 K C17 QT4 . C QT4 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc1 A OE2 GLU 788 A GLU 788 1_555 F CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc2 A OE1 GLN 791 A GLN 791 1_555 F CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc3 A OD1 ASN 805 A ASN 805 1_555 F CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc4 A OE1 GLU 808 A GLU 808 1_555 F CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A OE2 GLU 808 A GLU 808 1_555 F CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc6 B OE2 GLU 788 B GLU 788 1_555 H CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc7 B OE1 GLN 791 B GLN 791 1_555 H CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc8 B OD1 ASN 805 B ASN 805 1_555 H CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc9 B OE1 GLU 808 B GLU 808 1_555 H CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc10 B OE2 GLU 808 B GLU 808 1_555 H CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc11 C OE2 GLU 788 D GLU 788 1_555 J CA CA . D CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc12 C OE1 GLN 791 D GLN 791 1_555 J CA CA . D CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc13 C OD1 ASN 805 D ASN 805 1_555 J CA CA . D CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc14 C OE1 GLU 808 D GLU 808 1_555 J CA CA . D CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc15 C OE2 GLU 808 D GLU 808 1_555 J CA CA . D CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc16 D OE2 GLU 788 C GLU 788 1_555 L CA CA . C CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc17 D OE1 GLN 791 C GLN 791 1_555 L CA CA . C CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc18 D OD1 ASN 805 C ASN 805 1_555 L CA CA . C CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc19 D OE1 GLU 808 C GLU 808 1_555 L CA CA . C CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc20 D OE2 GLU 808 C GLU 808 1_555 L CA CA . C CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6V9V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 QT4 A 1 1201 621 QT4 CBI . F 3 CA A 1 1202 1 CA CA . G 2 QT4 B 1 1201 621 QT4 CBI . H 3 CA B 1 1202 2 CA CA . I 2 QT4 D 1 1201 621 QT4 CBI . J 3 CA D 1 1202 4 CA CA . K 2 QT4 C 1 1201 621 QT4 CBI . L 3 CA C 1 1202 3 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 189.907 _atom_site.Cartn_y 159.821 _atom_site.Cartn_z 127.767 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 102.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1202 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #