data_6VA7
#
_model_server_result.job_id            lu3ZS75YyMM6XvCb6OJSJw 
_model_server_result.datetime_utc      '2024-11-14 18:52:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6va7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6VA7 
#
_exptl.entry_id    6VA7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VA7 
_cell.length_a            157.354 
_cell.length_b            157.354 
_cell.length_c            113.616 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VA7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 157.354 157.354 56.808 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     6VA7 
_atom_sites.fract_transf_matrix[1][1]    0.006355 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           NAP 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     799 
_pdbx_nonpoly_scheme.pdb_mon_id       NAP 
_pdbx_nonpoly_scheme.auth_mon_id      NAP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 7.563 92.642 30.126 1 78.03 ? PA NAP 601 A 1 
HETATM 2 O O1A NAP . . . B 2 8.324 92.41 31.38 1 91.04 ? O1A NAP 601 A 1 
HETATM 3 O O2A NAP . . . B 2 6.182 93.198 30.309 1 89.86 ? O2A NAP 601 A 1 
HETATM 4 O O5B NAP . . . B 2 7.445 91.251 29.378 1 82.28 ? O5B NAP 601 A 1 
HETATM 5 C C5B NAP . . . B 2 7.077 91.212 28.049 1 78.77 ? C5B NAP 601 A 1 
HETATM 6 C C4B NAP . . . B 2 6.209 90.054 27.812 1 69.3 ? C4B NAP 601 A 1 
HETATM 7 O O4B NAP . . . B 2 6.569 89.08 28.819 1 74.82 ? O4B NAP 601 A 1 
HETATM 8 C C3B NAP . . . B 2 4.756 90.359 28.146 1 72.45 ? C3B NAP 601 A 1 
HETATM 9 O O3B NAP . . . B 2 4.158 90.963 27.006 1 72.18 ? O3B NAP 601 A 1 
HETATM 10 C C2B NAP . . . B 2 4.209 88.965 28.378 1 72.24 ? C2B NAP 601 A 1 
HETATM 11 O O2B NAP . . . B 2 3.903 88.312 27.153 1 71.22 ? O2B NAP 601 A 1 
HETATM 12 C C1B NAP . . . B 2 5.453 88.268 29.069 1 74.68 ? C1B NAP 601 A 1 
HETATM 13 N N9A NAP . . . B 2 5.394 88.162 30.527 1 77.21 ? N9A NAP 601 A 1 
HETATM 14 C C8A NAP . . . B 2 5.625 89.183 31.479 1 79.17 ? C8A NAP 601 A 1 
HETATM 15 N N7A NAP . . . B 2 5.513 88.737 32.755 1 86.9 ? N7A NAP 601 A 1 
HETATM 16 C C5A NAP . . . B 2 5.209 87.371 32.619 1 75.63 ? C5A NAP 601 A 1 
HETATM 17 C C6A NAP . . . B 2 4.969 86.346 33.54 1 79.27 ? C6A NAP 601 A 1 
HETATM 18 N N6A NAP . . . B 2 5.008 86.595 34.901 1 86.14 ? N6A NAP 601 A 1 
HETATM 19 N N1A NAP . . . B 2 4.69 85.08 33.098 1 82.55 ? N1A NAP 601 A 1 
HETATM 20 C C2A NAP . . . B 2 4.657 84.884 31.786 1 72.91 ? C2A NAP 601 A 1 
HETATM 21 N N3A NAP . . . B 2 4.856 85.742 30.802 1 74.42 ? N3A NAP 601 A 1 
HETATM 22 C C4A NAP . . . B 2 5.137 86.999 31.245 1 77.92 ? C4A NAP 601 A 1 
HETATM 23 O O3 NAP . . . B 2 8.421 93.702 29.309 1 70.8 ? O3 NAP 601 A 1 
HETATM 24 P PN NAP . . . B 2 9.908 94.182 29.375 1 78.57 ? PN NAP 601 A 1 
HETATM 25 O O1N NAP . . . B 2 10.224 94.66 28.002 1 88.94 ? O1N NAP 601 A 1 
HETATM 26 O O2N NAP . . . B 2 10.133 95.242 30.41 1 90.77 ? O2N NAP 601 A 1 
HETATM 27 O O5D NAP . . . B 2 10.879 92.966 29.694 1 74.59 ? O5D NAP 601 A 1 
HETATM 28 C C5D NAP . . . B 2 11.907 92.612 28.732 1 79.5 ? C5D NAP 601 A 1 
HETATM 29 C C4D NAP . . . B 2 13.136 92.011 29.417 1 74.79 ? C4D NAP 601 A 1 
HETATM 30 O O4D NAP . . . B 2 14.153 93.013 29.444 1 81.32 ? O4D NAP 601 A 1 
HETATM 31 C C3D NAP . . . B 2 12.976 91.491 30.86 1 80.72 ? C3D NAP 601 A 1 
HETATM 32 O O3D NAP . . . B 2 13.676 90.308 31.002 1 82.66 ? O3D NAP 601 A 1 
HETATM 33 C C2D NAP . . . B 2 13.597 92.607 31.708 1 83.86 ? C2D NAP 601 A 1 
HETATM 34 O O2D NAP . . . B 2 14.305 92.129 32.805 1 84.77 ? O2D NAP 601 A 1 
HETATM 35 C C1D NAP . . . B 2 14.643 93.139 30.757 1 83.02 ? C1D NAP 601 A 1 
HETATM 36 N N1N NAP . . . B 2 14.883 94.586 30.974 1 85.22 ? N1N NAP 601 A 1 
HETATM 37 C C2N NAP . . . B 2 15.852 94.937 31.852 1 86.66 ? C2N NAP 601 A 1 
HETATM 38 C C3N NAP . . . B 2 16.127 96.27 32.093 1 89.93 ? C3N NAP 601 A 1 
HETATM 39 C C7N NAP . . . B 2 17.223 96.603 33.094 1 98.28 ? C7N NAP 601 A 1 
HETATM 40 O O7N NAP . . . B 2 17.702 95.704 33.812 1 100.25 ? O7N NAP 601 A 1 
HETATM 41 N N7N NAP . . . B 2 17.64 97.871 33.17 1 96.87 ? N7N NAP 601 A 1 
HETATM 42 C C4N NAP . . . B 2 15.384 97.262 31.404 1 88.51 ? C4N NAP 601 A 1 
HETATM 43 C C5N NAP . . . B 2 14.396 96.876 30.502 1 82.7 ? C5N NAP 601 A 1 
HETATM 44 C C6N NAP . . . B 2 14.138 95.536 30.278 1 84.12 ? C6N NAP 601 A 1 
HETATM 45 P P2B NAP . . . B 2 2.42 87.963 26.809 1 79.88 ? P2B NAP 601 A 1 
HETATM 46 O O1X NAP . . . B 2 1.998 88.553 25.465 1 76.61 ? O1X NAP 601 A 1 
HETATM 47 O O2X NAP . . . B 2 1.481 88.339 27.931 1 84.35 ? O2X NAP 601 A 1 
HETATM 48 O O3X NAP . . . B 2 2.543 86.446 26.742 1 74.14 ? O3X NAP 601 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           48 
#