data_6VA8
#
_model_server_result.job_id            5SWp8d1ojBNLHhrJxYgzjQ 
_model_server_result.datetime_utc      '2024-10-18 15:32:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6va8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6VA8 
#
_exptl.entry_id    6VA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VA8 
_cell.length_a            158.62 
_cell.length_b            158.62 
_cell.length_c            113.91 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     6VA8 
_atom_sites.fract_transf_matrix[1][1]    0.006304 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           NAP 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     799 
_pdbx_nonpoly_scheme.pdb_mon_id       NAP 
_pdbx_nonpoly_scheme.auth_mon_id      NAP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 13.981 71.774 1.476 1 111.47 ? PA NAP 601 A 1 
HETATM 2 O O1A NAP . . . B 2 13.731 71.035 2.739 1 114.05 -1 O1A NAP 601 A 1 
HETATM 3 O O2A NAP . . . B 2 14.393 73.204 1.66 1 108.57 ? O2A NAP 601 A 1 
HETATM 4 O O5B NAP . . . B 2 12.611 71.757 0.669 1 120.07 ? O5B NAP 601 A 1 
HETATM 5 C C5B NAP . . . B 2 12.546 72.245 -0.623 1 100.45 ? C5B NAP 601 A 1 
HETATM 6 C C4B NAP . . . B 2 11.373 73.145 -0.773 1 82.74 ? C4B NAP 601 A 1 
HETATM 7 O O4B NAP . . . B 2 10.388 72.741 0.207 1 91.53 ? O4B NAP 601 A 1 
HETATM 8 C C3B NAP . . . B 2 11.668 74.59 -0.36 1 100.45 ? C3B NAP 601 A 1 
HETATM 9 O O3B NAP . . . B 2 12.363 75.255 -1.418 1 137.64 ? O3B NAP 601 A 1 
HETATM 10 C C2B NAP . . . B 2 10.249 75.118 -0.2 1 103.91 ? C2B NAP 601 A 1 
HETATM 11 O O2B NAP . . . B 2 9.639 75.446 -1.461 1 119.86 ? O2B NAP 601 A 1 
HETATM 12 C C1B NAP . . . B 2 9.554 73.858 0.467 1 126.45 ? C1B NAP 601 A 1 
HETATM 13 N N9A NAP . . . B 2 9.452 73.931 1.927 1 106.84 ? N9A NAP 601 A 1 
HETATM 14 C C8A NAP . . . B 2 10.489 73.755 2.874 1 92.05 ? C8A NAP 601 A 1 
HETATM 15 N N7A NAP . . . B 2 10.056 73.872 4.148 1 99.73 ? N7A NAP 601 A 1 
HETATM 16 C C5A NAP . . . B 2 8.679 74.128 4.023 1 106.39 ? C5A NAP 601 A 1 
HETATM 17 C C6A NAP . . . B 2 7.658 74.346 4.956 1 123.09 ? C6A NAP 601 A 1 
HETATM 18 N N6A NAP . . . B 2 7.927 74.331 6.31 1 150.85 ? N6A NAP 601 A 1 
HETATM 19 N N1A NAP . . . B 2 6.382 74.575 4.529 1 115.63 ? N1A NAP 601 A 1 
HETATM 20 C C2A NAP . . . B 2 6.172 74.579 3.216 1 128.19 ? C2A NAP 601 A 1 
HETATM 21 N N3A NAP . . . B 2 7.022 74.391 2.222 1 126.87 ? N3A NAP 601 A 1 
HETATM 22 C C4A NAP . . . B 2 8.29 74.164 2.651 1 103.81 ? C4A NAP 601 A 1 
HETATM 23 O O3 NAP . . . B 2 15.191 70.964 0.759 1 84.34 ? O3 NAP 601 A 1 
HETATM 24 P PN NAP . . . B 2 15.625 69.443 0.741 1 88.12 ? PN NAP 601 A 1 
HETATM 25 O O1N NAP . . . B 2 16.131 69.103 -0.622 1 95.1 -1 O1N NAP 601 A 1 
HETATM 26 O O2N NAP . . . B 2 16.621 69.127 1.815 1 152.23 ? O2N NAP 601 A 1 
HETATM 27 O O5D NAP . . . B 2 14.317 68.568 1.011 1 93.54 ? O5D NAP 601 A 1 
HETATM 28 C C5D NAP . . . B 2 13.864 67.573 0.064 1 91.51 ? C5D NAP 601 A 1 
HETATM 29 C C4D NAP . . . B 2 13.458 66.307 0.806 1 96.36 ? C4D NAP 601 A 1 
HETATM 30 O O4D NAP . . . B 2 14.595 65.434 0.85 1 96.62 ? O4D NAP 601 A 1 
HETATM 31 C C3D NAP . . . B 2 12.965 66.492 2.269 1 116.68 ? C3D NAP 601 A 1 
HETATM 32 O O3D NAP . . . B 2 11.792 65.783 2.484 1 94.67 ? O3D NAP 601 A 1 
HETATM 33 C C2D NAP . . . B 2 14.131 65.938 3.102 1 125.76 ? C2D NAP 601 A 1 
HETATM 34 O O2D NAP . . . B 2 13.722 65.238 4.232 1 109.19 ? O2D NAP 601 A 1 
HETATM 35 C C1D NAP . . . B 2 14.691 64.9 2.144 1 108.94 ? C1D NAP 601 A 1 
HETATM 36 N N1N NAP . . . B 2 16.138 64.659 2.404 1 125.51 ? N1N NAP 601 A 1 
HETATM 37 C C2N NAP . . . B 2 16.473 63.658 3.258 1 140.78 ? C2N NAP 601 A 1 
HETATM 38 C C3N NAP . . . B 2 17.802 63.386 3.532 1 148.83 ? C3N NAP 601 A 1 
HETATM 39 C C7N NAP . . . B 2 18.109 62.265 4.494 1 153.17 ? C7N NAP 601 A 1 
HETATM 40 O O7N NAP . . . B 2 17.197 61.777 5.18 1 169.34 ? O7N NAP 601 A 1 
HETATM 41 N N7N NAP . . . B 2 19.366 61.833 4.573 1 134.8 ? N7N NAP 601 A 1 
HETATM 42 C C4N NAP . . . B 2 18.81 64.159 2.911 1 138.17 ? C4N NAP 601 A 1 
HETATM 43 C C5N NAP . . . B 2 18.442 65.175 2.037 1 115.62 ? C5N NAP 601 A 1 
HETATM 44 C C6N NAP . . . B 2 17.106 65.432 1.774 1 111.07 ? C6N NAP 601 A 1 
HETATM 45 P P2B NAP . . . B 2 9.241 76.949 -1.755 1 202.85 ? P2B NAP 601 A 1 
HETATM 46 O O1X NAP . . . B 2 9.802 77.443 -3.08 1 153.07 ? O1X NAP 601 A 1 
HETATM 47 O O2X NAP . . . B 2 9.616 77.839 -0.606 1 140.68 -1 O2X NAP 601 A 1 
HETATM 48 O O3X NAP . . . B 2 7.729 76.811 -1.812 1 148.76 ? O3X NAP 601 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#