data_6VAJ
#
_model_server_result.job_id            Hi62OazOA88560gb_mJvDg 
_model_server_result.datetime_utc      '2025-04-23 06:08:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vaj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6VAJ 
#
_exptl.entry_id    6VAJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              281.799 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-chloro-N-(2,2-dimethylpropyl)-N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VAJ 
_cell.length_a            48.96 
_cell.length_b            48.96 
_cell.length_c            137.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VAJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             128 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              113 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C10 
_struct_conn.ptnr2_label_comp_id            QT7 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             QT7 
_struct_conn.ptnr2_auth_seq_id              201 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.776 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C11 H20 Cl N O3 S' 
_chem_comp.formula_weight    281.799 
_chem_comp.id                QT7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-chloro-N-(2,2-dimethylpropyl)-N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C9 QT7 sing 307 n n 
C5 C1 QT7 sing 308 n n 
O1 C9 QT7 doub 309 n n 
C9 N1 QT7 sing 310 n n 
N1 C4 QT7 sing 311 n n 
N1 C51 QT7 sing 312 n n 
C1 C4 QT7 sing 313 n n 
C1 C2 QT7 sing 314 n n 
C1 C3 QT7 sing 315 n n 
C6 C7 QT7 sing 316 n n 
C6 C51 QT7 sing 317 n n 
C7 S QT7 sing 318 n n 
C51 C8 QT7 sing 319 n n 
C8 S QT7 sing 320 n n 
S O2 QT7 doub 321 n n 
S O3 QT7 doub 322 n n 
C4 H1 QT7 sing 323 n n 
C4 H2 QT7 sing 324 n n 
C5 H3 QT7 sing 325 n n 
C5 H4 QT7 sing 326 n n 
C5 H5 QT7 sing 327 n n 
C6 H6 QT7 sing 328 n n 
C6 H7 QT7 sing 329 n n 
C7 H8 QT7 sing 330 n n 
C7 H9 QT7 sing 331 n n 
C8 H10 QT7 sing 332 n n 
C8 H11 QT7 sing 333 n n 
C10 H12 QT7 sing 334 n n 
C10 H13 QT7 sing 335 n n 
C3 H15 QT7 sing 336 n n 
C3 H16 QT7 sing 337 n n 
C3 H17 QT7 sing 338 n n 
C2 H18 QT7 sing 339 n n 
C2 H19 QT7 sing 340 n n 
C2 H20 QT7 sing 341 n n 
C51 H21 QT7 sing 342 n n 
C10 CL1 QT7 sing 343 n n 
#
_atom_sites.entry_id                     6VAJ 
_atom_sites.fract_transf_matrix[1][1]    0.020425 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 QT7 A 1 201 113 QT7 LIX . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 3 SO4 A 1 203 2 SO4 SO4 . 
E 4 PG4 A 1 204 1 PG4 PG4 . 
F 5 HOH A 1 301 115 HOH HOH . 
F 5 HOH A 2 302 19 HOH HOH . 
F 5 HOH A 3 303 116 HOH HOH . 
F 5 HOH A 4 304 111 HOH HOH . 
F 5 HOH A 5 305 32 HOH HOH . 
F 5 HOH A 6 306 132 HOH HOH . 
F 5 HOH A 7 307 42 HOH HOH . 
F 5 HOH A 8 308 82 HOH HOH . 
F 5 HOH A 9 309 36 HOH HOH . 
F 5 HOH A 10 310 117 HOH HOH . 
F 5 HOH A 11 311 101 HOH HOH . 
F 5 HOH A 12 312 64 HOH HOH . 
F 5 HOH A 13 313 16 HOH HOH . 
F 5 HOH A 14 314 91 HOH HOH . 
F 5 HOH A 15 315 87 HOH HOH . 
F 5 HOH A 16 316 63 HOH HOH . 
F 5 HOH A 17 317 13 HOH HOH . 
F 5 HOH A 18 318 17 HOH HOH . 
F 5 HOH A 19 319 60 HOH HOH . 
F 5 HOH A 20 320 102 HOH HOH . 
F 5 HOH A 21 321 62 HOH HOH . 
F 5 HOH A 22 322 68 HOH HOH . 
F 5 HOH A 23 323 29 HOH HOH . 
F 5 HOH A 24 324 97 HOH HOH . 
F 5 HOH A 25 325 103 HOH HOH . 
F 5 HOH A 26 326 3 HOH HOH . 
F 5 HOH A 27 327 8 HOH HOH . 
F 5 HOH A 28 328 6 HOH HOH . 
F 5 HOH A 29 329 72 HOH HOH . 
F 5 HOH A 30 330 98 HOH HOH . 
F 5 HOH A 31 331 35 HOH HOH . 
F 5 HOH A 32 332 24 HOH HOH . 
F 5 HOH A 33 333 23 HOH HOH . 
F 5 HOH A 34 334 108 HOH HOH . 
F 5 HOH A 35 335 2 HOH HOH . 
F 5 HOH A 36 336 52 HOH HOH . 
F 5 HOH A 37 337 58 HOH HOH . 
F 5 HOH A 38 338 47 HOH HOH . 
F 5 HOH A 39 339 48 HOH HOH . 
F 5 HOH A 40 340 57 HOH HOH . 
F 5 HOH A 41 341 27 HOH HOH . 
F 5 HOH A 42 342 12 HOH HOH . 
F 5 HOH A 43 343 45 HOH HOH . 
F 5 HOH A 44 344 96 HOH HOH . 
F 5 HOH A 45 345 28 HOH HOH . 
F 5 HOH A 46 346 70 HOH HOH . 
F 5 HOH A 47 347 9 HOH HOH . 
F 5 HOH A 48 348 50 HOH HOH . 
F 5 HOH A 49 349 25 HOH HOH . 
F 5 HOH A 50 350 34 HOH HOH . 
F 5 HOH A 51 351 114 HOH HOH . 
F 5 HOH A 52 352 122 HOH HOH . 
F 5 HOH A 53 353 20 HOH HOH . 
F 5 HOH A 54 354 11 HOH HOH . 
F 5 HOH A 55 355 107 HOH HOH . 
F 5 HOH A 56 356 51 HOH HOH . 
F 5 HOH A 57 357 75 HOH HOH . 
F 5 HOH A 58 358 31 HOH HOH . 
F 5 HOH A 59 359 128 HOH HOH . 
F 5 HOH A 60 360 7 HOH HOH . 
F 5 HOH A 61 361 94 HOH HOH . 
F 5 HOH A 62 362 105 HOH HOH . 
F 5 HOH A 63 363 61 HOH HOH . 
F 5 HOH A 64 364 69 HOH HOH . 
F 5 HOH A 65 365 110 HOH HOH . 
F 5 HOH A 66 366 4 HOH HOH . 
F 5 HOH A 67 367 37 HOH HOH . 
F 5 HOH A 68 368 83 HOH HOH . 
F 5 HOH A 69 369 106 HOH HOH . 
F 5 HOH A 70 370 40 HOH HOH . 
F 5 HOH A 71 371 99 HOH HOH . 
F 5 HOH A 72 372 92 HOH HOH . 
F 5 HOH A 73 373 1 HOH HOH . 
F 5 HOH A 74 374 14 HOH HOH . 
F 5 HOH A 75 375 15 HOH HOH . 
F 5 HOH A 76 376 41 HOH HOH . 
F 5 HOH A 77 377 38 HOH HOH . 
F 5 HOH A 78 378 67 HOH HOH . 
F 5 HOH A 79 379 18 HOH HOH . 
F 5 HOH A 80 380 10 HOH HOH . 
F 5 HOH A 81 381 65 HOH HOH . 
F 5 HOH A 82 382 118 HOH HOH . 
F 5 HOH A 83 383 59 HOH HOH . 
F 5 HOH A 84 384 56 HOH HOH . 
F 5 HOH A 85 385 120 HOH HOH . 
F 5 HOH A 86 386 5 HOH HOH . 
F 5 HOH A 87 387 113 HOH HOH . 
F 5 HOH A 88 388 79 HOH HOH . 
F 5 HOH A 89 389 43 HOH HOH . 
F 5 HOH A 90 390 123 HOH HOH . 
F 5 HOH A 91 391 88 HOH HOH . 
F 5 HOH A 92 392 30 HOH HOH . 
F 5 HOH A 93 393 21 HOH HOH . 
F 5 HOH A 94 394 109 HOH HOH . 
F 5 HOH A 95 395 26 HOH HOH . 
F 5 HOH A 96 396 33 HOH HOH . 
F 5 HOH A 97 397 86 HOH HOH . 
F 5 HOH A 98 398 22 HOH HOH . 
F 5 HOH A 99 399 104 HOH HOH . 
F 5 HOH A 100 400 39 HOH HOH . 
F 5 HOH A 101 401 76 HOH HOH . 
F 5 HOH A 102 402 112 HOH HOH . 
F 5 HOH A 103 403 89 HOH HOH . 
F 5 HOH A 104 404 100 HOH HOH . 
F 5 HOH A 105 405 55 HOH HOH . 
F 5 HOH A 106 406 93 HOH HOH . 
F 5 HOH A 107 407 54 HOH HOH . 
F 5 HOH A 108 408 131 HOH HOH . 
F 5 HOH A 109 409 129 HOH HOH . 
F 5 HOH A 110 410 84 HOH HOH . 
F 5 HOH A 111 411 44 HOH HOH . 
F 5 HOH A 112 412 124 HOH HOH . 
F 5 HOH A 113 413 85 HOH HOH . 
F 5 HOH A 114 414 80 HOH HOH . 
F 5 HOH A 115 415 121 HOH HOH . 
F 5 HOH A 116 416 74 HOH HOH . 
F 5 HOH A 117 417 81 HOH HOH . 
F 5 HOH A 118 418 46 HOH HOH . 
F 5 HOH A 119 419 90 HOH HOH . 
F 5 HOH A 120 420 127 HOH HOH . 
F 5 HOH A 121 421 49 HOH HOH . 
F 5 HOH A 122 422 73 HOH HOH . 
F 5 HOH A 123 423 95 HOH HOH . 
F 5 HOH A 124 424 66 HOH HOH . 
F 5 HOH A 125 425 77 HOH HOH . 
F 5 HOH A 126 426 126 HOH HOH . 
F 5 HOH A 127 427 125 HOH HOH . 
F 5 HOH A 128 428 53 HOH HOH . 
F 5 HOH A 129 429 71 HOH HOH . 
F 5 HOH A 130 430 119 HOH HOH . 
F 5 HOH A 131 431 130 HOH HOH . 
F 5 HOH A 132 432 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 QT7 . . . B 2 -12.32 -35.652 11.866 1 29.63 ? N1 QT7 201 A 1 
HETATM 2 C C4 QT7 . . . B 2 -12.853 -36.976 12.212 1 34.52 ? C4 QT7 201 A 1 
HETATM 3 C C5 QT7 . . . B 2 -14.63 -36.978 10.44 1 32.83 ? C5 QT7 201 A 1 
HETATM 4 C C6 QT7 . . . B 2 -13.162 -33.387 12.288 1 26.75 ? C6 QT7 201 A 1 
HETATM 5 C C7 QT7 . . . B 2 -12.476 -32.118 12.808 1 26.31 ? C7 QT7 201 A 1 
HETATM 6 C C8 QT7 . . . B 2 -11.208 -34.201 13.542 1 28.8 ? C8 QT7 201 A 1 
HETATM 7 C C10 QT7 . . . B 2 -11.638 -36.382 9.636 1 27.94 ? C10 QT7 201 A 1 
HETATM 8 C C1 QT7 . . . B 2 -14.344 -37.184 11.924 1 32.64 ? C1 QT7 201 A 1 
HETATM 9 C C3 QT7 . . . B 2 -15.178 -36.206 12.739 1 38.1 ? C3 QT7 201 A 1 
HETATM 10 C C2 QT7 . . . B 2 -14.703 -38.61 12.323 1 37.22 ? C2 QT7 201 A 1 
HETATM 11 O O1 QT7 . . . B 2 -11.09 -34.273 10.607 1 29.24 ? O1 QT7 201 A 1 
HETATM 12 O O3 QT7 . . . B 2 -12.191 -32.645 15.304 1 29.6 ? O3 QT7 201 A 1 
HETATM 13 O O2 QT7 . . . B 2 -10.276 -31.859 14.097 1 27.12 ? O2 QT7 201 A 1 
HETATM 14 C C9 QT7 . . . B 2 -11.663 -35.343 10.746 1 30.12 ? C9 QT7 201 A 1 
HETATM 15 C C51 QT7 . . . B 2 -12.54 -34.635 12.918 1 30.67 ? C51 QT7 201 A 1 
HETATM 16 S S QT7 . . . B 2 -11.486 -32.638 14.047 1 27.3 ? S QT7 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#