data_6VAJ # _model_server_result.job_id 3jYVaqUPAbfiuxoTFcPXDg _model_server_result.datetime_utc '2024-12-26 23:28:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vaj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6VAJ # _exptl.entry_id 6VAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VAJ _cell.length_a 48.96 _cell.length_b 48.96 _cell.length_c 137.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 128 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 113 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C10 _struct_conn.ptnr2_label_comp_id QT7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id QT7 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.776 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 6VAJ _atom_sites.fract_transf_matrix[1][1] 0.020425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QT7 A 1 201 113 QT7 LIX . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 PG4 A 1 204 1 PG4 PG4 . F 5 HOH A 1 301 115 HOH HOH . F 5 HOH A 2 302 19 HOH HOH . F 5 HOH A 3 303 116 HOH HOH . F 5 HOH A 4 304 111 HOH HOH . F 5 HOH A 5 305 32 HOH HOH . F 5 HOH A 6 306 132 HOH HOH . F 5 HOH A 7 307 42 HOH HOH . F 5 HOH A 8 308 82 HOH HOH . F 5 HOH A 9 309 36 HOH HOH . F 5 HOH A 10 310 117 HOH HOH . F 5 HOH A 11 311 101 HOH HOH . F 5 HOH A 12 312 64 HOH HOH . F 5 HOH A 13 313 16 HOH HOH . F 5 HOH A 14 314 91 HOH HOH . F 5 HOH A 15 315 87 HOH HOH . F 5 HOH A 16 316 63 HOH HOH . F 5 HOH A 17 317 13 HOH HOH . F 5 HOH A 18 318 17 HOH HOH . F 5 HOH A 19 319 60 HOH HOH . F 5 HOH A 20 320 102 HOH HOH . F 5 HOH A 21 321 62 HOH HOH . F 5 HOH A 22 322 68 HOH HOH . F 5 HOH A 23 323 29 HOH HOH . F 5 HOH A 24 324 97 HOH HOH . F 5 HOH A 25 325 103 HOH HOH . F 5 HOH A 26 326 3 HOH HOH . F 5 HOH A 27 327 8 HOH HOH . F 5 HOH A 28 328 6 HOH HOH . F 5 HOH A 29 329 72 HOH HOH . F 5 HOH A 30 330 98 HOH HOH . F 5 HOH A 31 331 35 HOH HOH . F 5 HOH A 32 332 24 HOH HOH . F 5 HOH A 33 333 23 HOH HOH . F 5 HOH A 34 334 108 HOH HOH . F 5 HOH A 35 335 2 HOH HOH . F 5 HOH A 36 336 52 HOH HOH . F 5 HOH A 37 337 58 HOH HOH . F 5 HOH A 38 338 47 HOH HOH . F 5 HOH A 39 339 48 HOH HOH . F 5 HOH A 40 340 57 HOH HOH . F 5 HOH A 41 341 27 HOH HOH . F 5 HOH A 42 342 12 HOH HOH . F 5 HOH A 43 343 45 HOH HOH . F 5 HOH A 44 344 96 HOH HOH . F 5 HOH A 45 345 28 HOH HOH . F 5 HOH A 46 346 70 HOH HOH . F 5 HOH A 47 347 9 HOH HOH . F 5 HOH A 48 348 50 HOH HOH . F 5 HOH A 49 349 25 HOH HOH . F 5 HOH A 50 350 34 HOH HOH . F 5 HOH A 51 351 114 HOH HOH . F 5 HOH A 52 352 122 HOH HOH . F 5 HOH A 53 353 20 HOH HOH . F 5 HOH A 54 354 11 HOH HOH . F 5 HOH A 55 355 107 HOH HOH . F 5 HOH A 56 356 51 HOH HOH . F 5 HOH A 57 357 75 HOH HOH . F 5 HOH A 58 358 31 HOH HOH . F 5 HOH A 59 359 128 HOH HOH . F 5 HOH A 60 360 7 HOH HOH . F 5 HOH A 61 361 94 HOH HOH . F 5 HOH A 62 362 105 HOH HOH . F 5 HOH A 63 363 61 HOH HOH . F 5 HOH A 64 364 69 HOH HOH . F 5 HOH A 65 365 110 HOH HOH . F 5 HOH A 66 366 4 HOH HOH . F 5 HOH A 67 367 37 HOH HOH . F 5 HOH A 68 368 83 HOH HOH . F 5 HOH A 69 369 106 HOH HOH . F 5 HOH A 70 370 40 HOH HOH . F 5 HOH A 71 371 99 HOH HOH . F 5 HOH A 72 372 92 HOH HOH . F 5 HOH A 73 373 1 HOH HOH . F 5 HOH A 74 374 14 HOH HOH . F 5 HOH A 75 375 15 HOH HOH . F 5 HOH A 76 376 41 HOH HOH . F 5 HOH A 77 377 38 HOH HOH . F 5 HOH A 78 378 67 HOH HOH . F 5 HOH A 79 379 18 HOH HOH . F 5 HOH A 80 380 10 HOH HOH . F 5 HOH A 81 381 65 HOH HOH . F 5 HOH A 82 382 118 HOH HOH . F 5 HOH A 83 383 59 HOH HOH . F 5 HOH A 84 384 56 HOH HOH . F 5 HOH A 85 385 120 HOH HOH . F 5 HOH A 86 386 5 HOH HOH . F 5 HOH A 87 387 113 HOH HOH . F 5 HOH A 88 388 79 HOH HOH . F 5 HOH A 89 389 43 HOH HOH . F 5 HOH A 90 390 123 HOH HOH . F 5 HOH A 91 391 88 HOH HOH . F 5 HOH A 92 392 30 HOH HOH . F 5 HOH A 93 393 21 HOH HOH . F 5 HOH A 94 394 109 HOH HOH . F 5 HOH A 95 395 26 HOH HOH . F 5 HOH A 96 396 33 HOH HOH . F 5 HOH A 97 397 86 HOH HOH . F 5 HOH A 98 398 22 HOH HOH . F 5 HOH A 99 399 104 HOH HOH . F 5 HOH A 100 400 39 HOH HOH . F 5 HOH A 101 401 76 HOH HOH . F 5 HOH A 102 402 112 HOH HOH . F 5 HOH A 103 403 89 HOH HOH . F 5 HOH A 104 404 100 HOH HOH . F 5 HOH A 105 405 55 HOH HOH . F 5 HOH A 106 406 93 HOH HOH . F 5 HOH A 107 407 54 HOH HOH . F 5 HOH A 108 408 131 HOH HOH . F 5 HOH A 109 409 129 HOH HOH . F 5 HOH A 110 410 84 HOH HOH . F 5 HOH A 111 411 44 HOH HOH . F 5 HOH A 112 412 124 HOH HOH . F 5 HOH A 113 413 85 HOH HOH . F 5 HOH A 114 414 80 HOH HOH . F 5 HOH A 115 415 121 HOH HOH . F 5 HOH A 116 416 74 HOH HOH . F 5 HOH A 117 417 81 HOH HOH . F 5 HOH A 118 418 46 HOH HOH . F 5 HOH A 119 419 90 HOH HOH . F 5 HOH A 120 420 127 HOH HOH . F 5 HOH A 121 421 49 HOH HOH . F 5 HOH A 122 422 73 HOH HOH . F 5 HOH A 123 423 95 HOH HOH . F 5 HOH A 124 424 66 HOH HOH . F 5 HOH A 125 425 77 HOH HOH . F 5 HOH A 126 426 126 HOH HOH . F 5 HOH A 127 427 125 HOH HOH . F 5 HOH A 128 428 53 HOH HOH . F 5 HOH A 129 429 71 HOH HOH . F 5 HOH A 130 430 119 HOH HOH . F 5 HOH A 131 431 130 HOH HOH . F 5 HOH A 132 432 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . E 4 -4.667 -14.172 2.412 1 54.39 ? O1 PG4 204 A 1 HETATM 2 C C1 PG4 . . . E 4 -4.595 -13.18 1.422 1 49.81 ? C1 PG4 204 A 1 HETATM 3 C C2 PG4 . . . E 4 -5.119 -11.854 1.972 1 46.04 ? C2 PG4 204 A 1 HETATM 4 O O2 PG4 . . . E 4 -4.502 -11.55 3.191 1 46.21 ? O2 PG4 204 A 1 HETATM 5 C C3 PG4 . . . E 4 -3.212 -11.026 3.081 1 47.76 ? C3 PG4 204 A 1 HETATM 6 C C4 PG4 . . . E 4 -2.78 -10.371 4.393 1 47.99 ? C4 PG4 204 A 1 HETATM 7 O O3 PG4 . . . E 4 -2.208 -11.337 5.234 1 42.09 ? O3 PG4 204 A 1 HETATM 8 C C5 PG4 . . . E 4 -0.92 -11.047 5.697 1 46.43 ? C5 PG4 204 A 1 HETATM 9 C C6 PG4 . . . E 4 -0.417 -12.218 6.543 1 45.44 ? C6 PG4 204 A 1 HETATM 10 O O4 PG4 . . . E 4 -0.472 -13.403 5.794 1 44.28 ? O4 PG4 204 A 1 HETATM 11 C C7 PG4 . . . E 4 -0.333 -14.577 6.545 1 50.39 ? C7 PG4 204 A 1 HETATM 12 C C8 PG4 . . . E 4 -0.602 -15.797 5.664 1 53.26 ? C8 PG4 204 A 1 HETATM 13 O O5 PG4 . . . E 4 0.593 -16.242 5.08 1 53.36 ? O5 PG4 204 A 1 HETATM 14 H HO1 PG4 . . . E 4 -4.936 -13.826 3.141 1 65.28 ? HO1 PG4 204 A 1 HETATM 15 H H11 PG4 . . . E 4 -3.672 -13.07 1.144 1 59.78 ? H11 PG4 204 A 1 HETATM 16 H H12 PG4 . . . E 4 -5.132 -13.447 0.66 1 59.78 ? H12 PG4 204 A 1 HETATM 17 H H21 PG4 . . . E 4 -4.932 -11.148 1.334 1 55.26 ? H21 PG4 204 A 1 HETATM 18 H H22 PG4 . . . E 4 -6.078 -11.922 2.108 1 55.26 ? H22 PG4 204 A 1 HETATM 19 H H31 PG4 . . . E 4 -2.594 -11.742 2.865 1 57.32 ? H31 PG4 204 A 1 HETATM 20 H H32 PG4 . . . E 4 -3.197 -10.362 2.375 1 57.32 ? H32 PG4 204 A 1 HETATM 21 H H41 PG4 . . . E 4 -2.128 -9.677 4.209 1 57.6 ? H41 PG4 204 A 1 HETATM 22 H H42 PG4 . . . E 4 -3.553 -9.981 4.829 1 57.6 ? H42 PG4 204 A 1 HETATM 23 H H51 PG4 . . . E 4 -0.326 -10.913 4.942 1 55.73 ? H51 PG4 204 A 1 HETATM 24 H H52 PG4 . . . E 4 -0.942 -10.242 6.237 1 55.73 ? H52 PG4 204 A 1 HETATM 25 H H61 PG4 . . . E 4 0.5 -12.05 6.813 1 54.54 ? H61 PG4 204 A 1 HETATM 26 H H62 PG4 . . . E 4 -0.974 -12.309 7.332 1 54.54 ? H62 PG4 204 A 1 HETATM 27 H H71 PG4 . . . E 4 0.569 -14.628 6.897 1 60.48 ? H71 PG4 204 A 1 HETATM 28 H H72 PG4 . . . E 4 -0.967 -14.565 7.279 1 60.48 ? H72 PG4 204 A 1 HETATM 29 H H81 PG4 . . . E 4 -0.978 -16.507 6.206 1 63.92 ? H81 PG4 204 A 1 HETATM 30 H H82 PG4 . . . E 4 -1.23 -15.556 4.965 1 63.92 ? H82 PG4 204 A 1 HETATM 31 H HO5 PG4 . . . E 4 0.999 -15.583 4.729 1 64.05 ? HO5 PG4 204 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 60 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1119 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 31 #