data_6VAX # _model_server_result.job_id 54qEG_M1i0xO4n208rhHng _model_server_result.datetime_utc '2024-11-29 07:20:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":703}' # _entry.id 6VAX # _exptl.entry_id 6VAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.16 _cell.angle_gamma 90 _cell.entry_id 6VAX _cell.length_a 210.558 _cell.length_b 68.782 _cell.length_c 126.578 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,W,X 1 1 C,D,N,O,P,Q,R,S,T,U,V,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 67 A HIS 99 1_555 E C8M FAD . A FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 C NE2 HIS 67 C HIS 99 1_555 O C8M FAD . C FAD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A O ASN 377 A ASN 409 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc2 A O MET 378 A MET 410 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc3 A O GLY 379 A GLY 411 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc4 A O GLU 408 A GLU 440 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc5 A O ALA 410 A ALA 442 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc6 I K K . A K 705 1_555 W O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc7 C O ASN 377 C ASN 409 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc8 C O MET 378 C MET 410 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc9 C O GLY 379 C GLY 411 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc10 C O GLU 408 C GLU 440 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc11 C O ALA 410 C ALA 442 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc12 Q K K . C K 704 1_555 Y O HOH . C HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 350 n n C1 C3 MLI sing 351 n n C1 H11 MLI sing 352 n n C1 H12 MLI sing 353 n n C2 O6 MLI doub 354 n n C2 O7 MLI sing 355 n n C3 O8 MLI doub 356 n n C3 O9 MLI sing 357 n n # _atom_sites.entry_id 6VAX _atom_sites.fract_transf_matrix[1][1] 0.004749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000262 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FAD A 1 701 701 FAD FAD . F 4 OAA A 1 702 702 OAA OAA . G 5 MLI A 1 703 704 MLI MLI . H 6 GOL A 1 704 706 GOL GOL . I 7 K A 1 705 801 K K . J 8 EDO A 1 706 901 EDO EDO . K 8 EDO A 1 707 1001 EDO EDO . L 8 EDO A 1 708 1101 EDO EDO . M 8 EDO A 1 709 1201 EDO EDO . N 6 GOL C 1 701 707 GOL GOL . O 3 FAD C 1 702 701 FAD FAD . P 4 OAA C 1 703 702 OAA OAA . Q 7 K C 1 704 801 K K . R 8 EDO C 1 705 901 EDO EDO . S 8 EDO C 1 706 1001 EDO EDO . T 8 EDO C 1 707 1201 EDO EDO . U 8 EDO C 1 708 1301 EDO EDO . V 8 EDO C 1 709 1401 EDO EDO . W 9 HOH A 1 801 9 HOH HOH . W 9 HOH A 2 802 49 HOH HOH . W 9 HOH A 3 803 3 HOH HOH . W 9 HOH A 4 804 69 HOH HOH . W 9 HOH A 5 805 63 HOH HOH . W 9 HOH A 6 806 68 HOH HOH . W 9 HOH A 7 807 100 HOH HOH . W 9 HOH A 8 808 51 HOH HOH . W 9 HOH A 9 809 12 HOH HOH . W 9 HOH A 10 810 102 HOH HOH . W 9 HOH A 11 811 94 HOH HOH . W 9 HOH A 12 812 32 HOH HOH . W 9 HOH A 13 813 13 HOH HOH . W 9 HOH A 14 814 2 HOH HOH . W 9 HOH A 15 815 10 HOH HOH . W 9 HOH A 16 816 95 HOH HOH . W 9 HOH A 17 817 43 HOH HOH . W 9 HOH A 18 818 34 HOH HOH . W 9 HOH A 19 819 1 HOH HOH . W 9 HOH A 20 820 96 HOH HOH . W 9 HOH A 21 821 6 HOH HOH . W 9 HOH A 22 822 97 HOH HOH . W 9 HOH A 23 823 45 HOH HOH . W 9 HOH A 24 824 66 HOH HOH . W 9 HOH A 25 825 99 HOH HOH . W 9 HOH A 26 826 39 HOH HOH . W 9 HOH A 27 827 17 HOH HOH . W 9 HOH A 28 828 27 HOH HOH . W 9 HOH A 29 829 91 HOH HOH . W 9 HOH A 30 830 54 HOH HOH . W 9 HOH A 31 831 14 HOH HOH . W 9 HOH A 32 832 50 HOH HOH . W 9 HOH A 33 833 5 HOH HOH . W 9 HOH A 34 834 11 HOH HOH . W 9 HOH A 35 835 4 HOH HOH . W 9 HOH A 36 836 7 HOH HOH . W 9 HOH A 37 837 53 HOH HOH . W 9 HOH A 38 838 67 HOH HOH . W 9 HOH A 39 839 47 HOH HOH . W 9 HOH A 40 840 92 HOH HOH . W 9 HOH A 41 841 31 HOH HOH . W 9 HOH A 42 842 98 HOH HOH . W 9 HOH A 43 843 104 HOH HOH . W 9 HOH A 44 844 59 HOH HOH . W 9 HOH A 45 845 101 HOH HOH . W 9 HOH A 46 846 65 HOH HOH . W 9 HOH A 47 847 64 HOH HOH . W 9 HOH A 48 848 8 HOH HOH . X 9 HOH B 1 201 103 HOH HOH . X 9 HOH B 2 202 35 HOH HOH . X 9 HOH B 3 203 89 HOH HOH . Y 9 HOH C 1 801 87 HOH HOH . Y 9 HOH C 2 802 22 HOH HOH . Y 9 HOH C 3 803 84 HOH HOH . Y 9 HOH C 4 804 16 HOH HOH . Y 9 HOH C 5 805 76 HOH HOH . Y 9 HOH C 6 806 18 HOH HOH . Y 9 HOH C 7 807 19 HOH HOH . Y 9 HOH C 8 808 86 HOH HOH . Y 9 HOH C 9 809 88 HOH HOH . Y 9 HOH C 10 810 80 HOH HOH . Y 9 HOH C 11 811 79 HOH HOH . Y 9 HOH C 12 812 23 HOH HOH . Y 9 HOH C 13 813 73 HOH HOH . Y 9 HOH C 14 814 21 HOH HOH . Y 9 HOH C 15 815 78 HOH HOH . Y 9 HOH C 16 816 44 HOH HOH . Y 9 HOH C 17 817 41 HOH HOH . Y 9 HOH C 18 818 26 HOH HOH . Y 9 HOH C 19 819 20 HOH HOH . Y 9 HOH C 20 820 24 HOH HOH . Y 9 HOH C 21 821 72 HOH HOH . Y 9 HOH C 22 822 33 HOH HOH . Y 9 HOH C 23 823 81 HOH HOH . Y 9 HOH C 24 824 38 HOH HOH . Y 9 HOH C 25 825 42 HOH HOH . Y 9 HOH C 26 826 48 HOH HOH . Y 9 HOH C 27 827 25 HOH HOH . Y 9 HOH C 28 828 105 HOH HOH . Y 9 HOH C 29 829 74 HOH HOH . Y 9 HOH C 30 830 29 HOH HOH . Y 9 HOH C 31 831 77 HOH HOH . Y 9 HOH C 32 832 82 HOH HOH . Y 9 HOH C 33 833 71 HOH HOH . Y 9 HOH C 34 834 56 HOH HOH . Y 9 HOH C 35 835 40 HOH HOH . Y 9 HOH C 36 836 60 HOH HOH . Y 9 HOH C 37 837 36 HOH HOH . Y 9 HOH C 38 838 15 HOH HOH . Y 9 HOH C 39 839 28 HOH HOH . Y 9 HOH C 40 840 30 HOH HOH . Y 9 HOH C 41 841 37 HOH HOH . Y 9 HOH C 42 842 75 HOH HOH . Y 9 HOH C 43 843 83 HOH HOH . Y 9 HOH C 44 844 52 HOH HOH . Y 9 HOH C 45 845 55 HOH HOH . Z 9 HOH D 1 201 58 HOH HOH . Z 9 HOH D 2 202 46 HOH HOH . Z 9 HOH D 3 203 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . G 5 42.901 33.507 77.323 1 111.03 ? C1 MLI 703 A 1 HETATM 2 C C2 MLI . . . G 5 42.399 33.422 78.763 1 114.71 ? C2 MLI 703 A 1 HETATM 3 C C3 MLI . . . G 5 41.713 33.453 76.364 1 107.09 ? C3 MLI 703 A 1 HETATM 4 O O6 MLI . . . G 5 41.945 32.335 79.209 1 116.35 ? O6 MLI 703 A 1 HETATM 5 O O7 MLI . . . G 5 42.436 34.439 79.505 1 112.42 ? O7 MLI 703 A 1 HETATM 6 O O8 MLI . . . G 5 41.535 32.44 75.636 1 98.5 ? O8 MLI 703 A 1 HETATM 7 O O9 MLI . . . G 5 40.913 34.423 76.299 1 107.31 ? O9 MLI 703 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #