data_6VAX
#
_model_server_result.job_id            KaXa_KAAqCyy4qa7DC7CTA 
_model_server_result.datetime_utc      '2024-11-29 07:00:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vax 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":709}' 
#
_entry.id    6VAX 
#
_exptl.entry_id    6VAX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.16 
_cell.angle_gamma         90 
_cell.entry_id            6VAX 
_cell.length_a            210.558 
_cell.length_b            68.782 
_cell.length_c            126.578 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VAX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,W,X 1 1 
C,D,N,O,P,Q,R,S,T,U,V,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
? 8 L N N 
? 8 M N N 
? 8 R N N 
? 8 S N N 
? 8 T N N 
? 8 U N N 
? 8 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 67 A HIS 99 1_555 E C8M FAD . A FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale2 C NE2 HIS 67 C HIS 99 1_555 O C8M FAD . C FAD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
metalc ? metalc1 A O ASN 377 A ASN 409 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc2 A O MET 378 A MET 410 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc3 A O GLY 379 A GLY 411 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc4 A O GLU 408 A GLU 440 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc5 A O ALA 410 A ALA 442 1_555 I K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc6 I K K . A K 705 1_555 W O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc7 C O ASN 377 C ASN 409 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc8 C O MET 378 C MET 410 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc9 C O GLY 379 C GLY 411 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc10 C O GLU 408 C GLU 440 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc11 C O ALA 410 C ALA 442 1_555 Q K K . C K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc12 Q K K . C K 704 1_555 Y O HOH . C HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6VAX 
_atom_sites.fract_transf_matrix[1][1]    0.004749 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000262 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FAD A 1 701 701 FAD FAD . 
F 4 OAA A 1 702 702 OAA OAA . 
G 5 MLI A 1 703 704 MLI MLI . 
H 6 GOL A 1 704 706 GOL GOL . 
I 7 K A 1 705 801 K K . 
J 8 EDO A 1 706 901 EDO EDO . 
K 8 EDO A 1 707 1001 EDO EDO . 
L 8 EDO A 1 708 1101 EDO EDO . 
M 8 EDO A 1 709 1201 EDO EDO . 
N 6 GOL C 1 701 707 GOL GOL . 
O 3 FAD C 1 702 701 FAD FAD . 
P 4 OAA C 1 703 702 OAA OAA . 
Q 7 K C 1 704 801 K K . 
R 8 EDO C 1 705 901 EDO EDO . 
S 8 EDO C 1 706 1001 EDO EDO . 
T 8 EDO C 1 707 1201 EDO EDO . 
U 8 EDO C 1 708 1301 EDO EDO . 
V 8 EDO C 1 709 1401 EDO EDO . 
W 9 HOH A 1 801 9 HOH HOH . 
W 9 HOH A 2 802 49 HOH HOH . 
W 9 HOH A 3 803 3 HOH HOH . 
W 9 HOH A 4 804 69 HOH HOH . 
W 9 HOH A 5 805 63 HOH HOH . 
W 9 HOH A 6 806 68 HOH HOH . 
W 9 HOH A 7 807 100 HOH HOH . 
W 9 HOH A 8 808 51 HOH HOH . 
W 9 HOH A 9 809 12 HOH HOH . 
W 9 HOH A 10 810 102 HOH HOH . 
W 9 HOH A 11 811 94 HOH HOH . 
W 9 HOH A 12 812 32 HOH HOH . 
W 9 HOH A 13 813 13 HOH HOH . 
W 9 HOH A 14 814 2 HOH HOH . 
W 9 HOH A 15 815 10 HOH HOH . 
W 9 HOH A 16 816 95 HOH HOH . 
W 9 HOH A 17 817 43 HOH HOH . 
W 9 HOH A 18 818 34 HOH HOH . 
W 9 HOH A 19 819 1 HOH HOH . 
W 9 HOH A 20 820 96 HOH HOH . 
W 9 HOH A 21 821 6 HOH HOH . 
W 9 HOH A 22 822 97 HOH HOH . 
W 9 HOH A 23 823 45 HOH HOH . 
W 9 HOH A 24 824 66 HOH HOH . 
W 9 HOH A 25 825 99 HOH HOH . 
W 9 HOH A 26 826 39 HOH HOH . 
W 9 HOH A 27 827 17 HOH HOH . 
W 9 HOH A 28 828 27 HOH HOH . 
W 9 HOH A 29 829 91 HOH HOH . 
W 9 HOH A 30 830 54 HOH HOH . 
W 9 HOH A 31 831 14 HOH HOH . 
W 9 HOH A 32 832 50 HOH HOH . 
W 9 HOH A 33 833 5 HOH HOH . 
W 9 HOH A 34 834 11 HOH HOH . 
W 9 HOH A 35 835 4 HOH HOH . 
W 9 HOH A 36 836 7 HOH HOH . 
W 9 HOH A 37 837 53 HOH HOH . 
W 9 HOH A 38 838 67 HOH HOH . 
W 9 HOH A 39 839 47 HOH HOH . 
W 9 HOH A 40 840 92 HOH HOH . 
W 9 HOH A 41 841 31 HOH HOH . 
W 9 HOH A 42 842 98 HOH HOH . 
W 9 HOH A 43 843 104 HOH HOH . 
W 9 HOH A 44 844 59 HOH HOH . 
W 9 HOH A 45 845 101 HOH HOH . 
W 9 HOH A 46 846 65 HOH HOH . 
W 9 HOH A 47 847 64 HOH HOH . 
W 9 HOH A 48 848 8 HOH HOH . 
X 9 HOH B 1 201 103 HOH HOH . 
X 9 HOH B 2 202 35 HOH HOH . 
X 9 HOH B 3 203 89 HOH HOH . 
Y 9 HOH C 1 801 87 HOH HOH . 
Y 9 HOH C 2 802 22 HOH HOH . 
Y 9 HOH C 3 803 84 HOH HOH . 
Y 9 HOH C 4 804 16 HOH HOH . 
Y 9 HOH C 5 805 76 HOH HOH . 
Y 9 HOH C 6 806 18 HOH HOH . 
Y 9 HOH C 7 807 19 HOH HOH . 
Y 9 HOH C 8 808 86 HOH HOH . 
Y 9 HOH C 9 809 88 HOH HOH . 
Y 9 HOH C 10 810 80 HOH HOH . 
Y 9 HOH C 11 811 79 HOH HOH . 
Y 9 HOH C 12 812 23 HOH HOH . 
Y 9 HOH C 13 813 73 HOH HOH . 
Y 9 HOH C 14 814 21 HOH HOH . 
Y 9 HOH C 15 815 78 HOH HOH . 
Y 9 HOH C 16 816 44 HOH HOH . 
Y 9 HOH C 17 817 41 HOH HOH . 
Y 9 HOH C 18 818 26 HOH HOH . 
Y 9 HOH C 19 819 20 HOH HOH . 
Y 9 HOH C 20 820 24 HOH HOH . 
Y 9 HOH C 21 821 72 HOH HOH . 
Y 9 HOH C 22 822 33 HOH HOH . 
Y 9 HOH C 23 823 81 HOH HOH . 
Y 9 HOH C 24 824 38 HOH HOH . 
Y 9 HOH C 25 825 42 HOH HOH . 
Y 9 HOH C 26 826 48 HOH HOH . 
Y 9 HOH C 27 827 25 HOH HOH . 
Y 9 HOH C 28 828 105 HOH HOH . 
Y 9 HOH C 29 829 74 HOH HOH . 
Y 9 HOH C 30 830 29 HOH HOH . 
Y 9 HOH C 31 831 77 HOH HOH . 
Y 9 HOH C 32 832 82 HOH HOH . 
Y 9 HOH C 33 833 71 HOH HOH . 
Y 9 HOH C 34 834 56 HOH HOH . 
Y 9 HOH C 35 835 40 HOH HOH . 
Y 9 HOH C 36 836 60 HOH HOH . 
Y 9 HOH C 37 837 36 HOH HOH . 
Y 9 HOH C 38 838 15 HOH HOH . 
Y 9 HOH C 39 839 28 HOH HOH . 
Y 9 HOH C 40 840 30 HOH HOH . 
Y 9 HOH C 41 841 37 HOH HOH . 
Y 9 HOH C 42 842 75 HOH HOH . 
Y 9 HOH C 43 843 83 HOH HOH . 
Y 9 HOH C 44 844 52 HOH HOH . 
Y 9 HOH C 45 845 55 HOH HOH . 
Z 9 HOH D 1 201 58 HOH HOH . 
Z 9 HOH D 2 202 46 HOH HOH . 
Z 9 HOH D 3 203 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 8 80.719 29.541 -3.224 1 113.13 ? C1 EDO 709 C 1 
HETATM 2 O O1 EDO . . . V 8 81.597 30.637 -3.505 1 130 ? O1 EDO 709 C 1 
HETATM 3 C C2 EDO . . . V 8 81.131 28.336 -4.061 1 121.44 ? C2 EDO 709 C 1 
HETATM 4 O O2 EDO . . . V 8 81.245 28.725 -5.435 1 113.21 ? O2 EDO 709 C 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#