data_6VB3 # _model_server_result.job_id lnOGqcSMWTjmGaiaaMxIQQ _model_server_result.datetime_utc '2024-12-22 02:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 6VB3 # _exptl.entry_id 6VB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VB3 _cell.length_a 50.799 _cell.length_b 81.828 _cell.length_c 110.453 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 221 A ASP 220 1_555 E NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 E NA NA . A NA 302 4_555 B OD2 ASP 60 B ASP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc3 B O ASP 35 B ASP 34 1_555 F NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 6VB3 _atom_sites.fract_transf_matrix[1][1] 0.019685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 5 EDO EDO . E 5 NA A 1 302 1 NA NA . F 5 NA B 1 101 2 NA NA . G 6 ACT B 1 102 1 ACT ACT . H 7 HOH A 1 401 173 HOH HOH . H 7 HOH A 2 402 246 HOH HOH . H 7 HOH A 3 403 251 HOH HOH . H 7 HOH A 4 404 99 HOH HOH . H 7 HOH A 5 405 94 HOH HOH . H 7 HOH A 6 406 240 HOH HOH . H 7 HOH A 7 407 136 HOH HOH . H 7 HOH A 8 408 125 HOH HOH . H 7 HOH A 9 409 8 HOH HOH . H 7 HOH A 10 410 89 HOH HOH . H 7 HOH A 11 411 139 HOH HOH . H 7 HOH A 12 412 254 HOH HOH . H 7 HOH A 13 413 1 HOH HOH . H 7 HOH A 14 414 28 HOH HOH . H 7 HOH A 15 415 288 HOH HOH . H 7 HOH A 16 416 20 HOH HOH . H 7 HOH A 17 417 198 HOH HOH . H 7 HOH A 18 418 123 HOH HOH . H 7 HOH A 19 419 329 HOH HOH . H 7 HOH A 20 420 208 HOH HOH . H 7 HOH A 21 421 194 HOH HOH . H 7 HOH A 22 422 27 HOH HOH . H 7 HOH A 23 423 152 HOH HOH . H 7 HOH A 24 424 168 HOH HOH . H 7 HOH A 25 425 23 HOH HOH . H 7 HOH A 26 426 38 HOH HOH . H 7 HOH A 27 427 216 HOH HOH . H 7 HOH A 28 428 169 HOH HOH . H 7 HOH A 29 429 2 HOH HOH . H 7 HOH A 30 430 292 HOH HOH . H 7 HOH A 31 431 227 HOH HOH . H 7 HOH A 32 432 207 HOH HOH . H 7 HOH A 33 433 101 HOH HOH . H 7 HOH A 34 434 10 HOH HOH . H 7 HOH A 35 435 349 HOH HOH . H 7 HOH A 36 436 289 HOH HOH . H 7 HOH A 37 437 315 HOH HOH . H 7 HOH A 38 438 300 HOH HOH . H 7 HOH A 39 439 93 HOH HOH . H 7 HOH A 40 440 271 HOH HOH . H 7 HOH A 41 441 66 HOH HOH . H 7 HOH A 42 442 302 HOH HOH . H 7 HOH A 43 443 132 HOH HOH . H 7 HOH A 44 444 16 HOH HOH . H 7 HOH A 45 445 41 HOH HOH . H 7 HOH A 46 446 112 HOH HOH . H 7 HOH A 47 447 145 HOH HOH . H 7 HOH A 48 448 215 HOH HOH . H 7 HOH A 49 449 80 HOH HOH . H 7 HOH A 50 450 14 HOH HOH . H 7 HOH A 51 451 111 HOH HOH . H 7 HOH A 52 452 3 HOH HOH . H 7 HOH A 53 453 192 HOH HOH . H 7 HOH A 54 454 81 HOH HOH . H 7 HOH A 55 455 91 HOH HOH . H 7 HOH A 56 456 184 HOH HOH . H 7 HOH A 57 457 272 HOH HOH . H 7 HOH A 58 458 231 HOH HOH . H 7 HOH A 59 459 243 HOH HOH . H 7 HOH A 60 460 68 HOH HOH . H 7 HOH A 61 461 63 HOH HOH . H 7 HOH A 62 462 115 HOH HOH . H 7 HOH A 63 463 21 HOH HOH . H 7 HOH A 64 464 36 HOH HOH . H 7 HOH A 65 465 328 HOH HOH . H 7 HOH A 66 466 72 HOH HOH . H 7 HOH A 67 467 62 HOH HOH . H 7 HOH A 68 468 53 HOH HOH . H 7 HOH A 69 469 75 HOH HOH . H 7 HOH A 70 470 220 HOH HOH . H 7 HOH A 71 471 18 HOH HOH . H 7 HOH A 72 472 128 HOH HOH . H 7 HOH A 73 473 40 HOH HOH . H 7 HOH A 74 474 24 HOH HOH . H 7 HOH A 75 475 102 HOH HOH . H 7 HOH A 76 476 7 HOH HOH . H 7 HOH A 77 477 49 HOH HOH . H 7 HOH A 78 478 32 HOH HOH . H 7 HOH A 79 479 70 HOH HOH . H 7 HOH A 80 480 58 HOH HOH . H 7 HOH A 81 481 4 HOH HOH . H 7 HOH A 82 482 259 HOH HOH . H 7 HOH A 83 483 186 HOH HOH . H 7 HOH A 84 484 90 HOH HOH . H 7 HOH A 85 485 67 HOH HOH . H 7 HOH A 86 486 120 HOH HOH . H 7 HOH A 87 487 189 HOH HOH . H 7 HOH A 88 488 78 HOH HOH . H 7 HOH A 89 489 35 HOH HOH . H 7 HOH A 90 490 11 HOH HOH . H 7 HOH A 91 491 76 HOH HOH . H 7 HOH A 92 492 85 HOH HOH . H 7 HOH A 93 493 12 HOH HOH . H 7 HOH A 94 494 190 HOH HOH . H 7 HOH A 95 495 47 HOH HOH . H 7 HOH A 96 496 45 HOH HOH . H 7 HOH A 97 497 83 HOH HOH . H 7 HOH A 98 498 15 HOH HOH . H 7 HOH A 99 499 113 HOH HOH . H 7 HOH A 100 500 25 HOH HOH . H 7 HOH A 101 501 345 HOH HOH . H 7 HOH A 102 502 191 HOH HOH . H 7 HOH A 103 503 95 HOH HOH . H 7 HOH A 104 504 200 HOH HOH . H 7 HOH A 105 505 154 HOH HOH . H 7 HOH A 106 506 64 HOH HOH . H 7 HOH A 107 507 50 HOH HOH . H 7 HOH A 108 508 319 HOH HOH . H 7 HOH A 109 509 223 HOH HOH . H 7 HOH A 110 510 116 HOH HOH . H 7 HOH A 111 511 88 HOH HOH . H 7 HOH A 112 512 104 HOH HOH . H 7 HOH A 113 513 51 HOH HOH . H 7 HOH A 114 514 96 HOH HOH . H 7 HOH A 115 515 162 HOH HOH . H 7 HOH A 116 516 65 HOH HOH . H 7 HOH A 117 517 230 HOH HOH . H 7 HOH A 118 518 205 HOH HOH . H 7 HOH A 119 519 252 HOH HOH . H 7 HOH A 120 520 324 HOH HOH . H 7 HOH A 121 521 71 HOH HOH . H 7 HOH A 122 522 170 HOH HOH . H 7 HOH A 123 523 314 HOH HOH . H 7 HOH A 124 524 225 HOH HOH . H 7 HOH A 125 525 214 HOH HOH . H 7 HOH A 126 526 221 HOH HOH . H 7 HOH A 127 527 22 HOH HOH . H 7 HOH A 128 528 137 HOH HOH . H 7 HOH A 129 529 124 HOH HOH . H 7 HOH A 130 530 110 HOH HOH . H 7 HOH A 131 531 256 HOH HOH . H 7 HOH A 132 532 29 HOH HOH . H 7 HOH A 133 533 217 HOH HOH . H 7 HOH A 134 534 247 HOH HOH . H 7 HOH A 135 535 133 HOH HOH . H 7 HOH A 136 536 117 HOH HOH . H 7 HOH A 137 537 308 HOH HOH . H 7 HOH A 138 538 327 HOH HOH . H 7 HOH A 139 539 77 HOH HOH . H 7 HOH A 140 540 183 HOH HOH . H 7 HOH A 141 541 196 HOH HOH . H 7 HOH A 142 542 100 HOH HOH . H 7 HOH A 143 543 303 HOH HOH . H 7 HOH A 144 544 253 HOH HOH . H 7 HOH A 145 545 261 HOH HOH . H 7 HOH A 146 546 138 HOH HOH . H 7 HOH A 147 547 250 HOH HOH . H 7 HOH A 148 548 121 HOH HOH . H 7 HOH A 149 549 166 HOH HOH . H 7 HOH A 150 550 46 HOH HOH . H 7 HOH A 151 551 348 HOH HOH . H 7 HOH A 152 552 203 HOH HOH . H 7 HOH A 153 553 199 HOH HOH . H 7 HOH A 154 554 74 HOH HOH . H 7 HOH A 155 555 339 HOH HOH . H 7 HOH A 156 556 285 HOH HOH . H 7 HOH A 157 557 248 HOH HOH . H 7 HOH A 158 558 201 HOH HOH . H 7 HOH A 159 559 318 HOH HOH . H 7 HOH A 160 560 321 HOH HOH . H 7 HOH A 161 561 97 HOH HOH . H 7 HOH A 162 562 311 HOH HOH . H 7 HOH A 163 563 195 HOH HOH . H 7 HOH A 164 564 218 HOH HOH . H 7 HOH A 165 565 244 HOH HOH . H 7 HOH A 166 566 255 HOH HOH . H 7 HOH A 167 567 350 HOH HOH . H 7 HOH A 168 568 127 HOH HOH . H 7 HOH A 169 569 346 HOH HOH . H 7 HOH A 170 570 59 HOH HOH . H 7 HOH A 171 571 237 HOH HOH . H 7 HOH A 172 572 210 HOH HOH . H 7 HOH A 173 573 266 HOH HOH . H 7 HOH A 174 574 304 HOH HOH . H 7 HOH A 175 575 202 HOH HOH . H 7 HOH A 176 576 226 HOH HOH . H 7 HOH A 177 577 181 HOH HOH . H 7 HOH A 178 578 278 HOH HOH . H 7 HOH A 179 579 187 HOH HOH . H 7 HOH A 180 580 337 HOH HOH . H 7 HOH A 181 581 276 HOH HOH . H 7 HOH A 182 582 313 HOH HOH . H 7 HOH A 183 583 332 HOH HOH . H 7 HOH A 184 584 222 HOH HOH . H 7 HOH A 185 585 274 HOH HOH . H 7 HOH A 186 586 233 HOH HOH . H 7 HOH A 187 587 281 HOH HOH . H 7 HOH A 188 588 235 HOH HOH . H 7 HOH A 189 589 175 HOH HOH . H 7 HOH A 190 590 180 HOH HOH . H 7 HOH A 191 591 284 HOH HOH . H 7 HOH A 192 592 33 HOH HOH . H 7 HOH A 193 593 307 HOH HOH . H 7 HOH A 194 594 342 HOH HOH . H 7 HOH A 195 595 268 HOH HOH . H 7 HOH A 196 596 287 HOH HOH . H 7 HOH A 197 597 279 HOH HOH . H 7 HOH A 198 598 267 HOH HOH . H 7 HOH A 199 599 161 HOH HOH . H 7 HOH A 200 600 153 HOH HOH . H 7 HOH A 201 601 334 HOH HOH . H 7 HOH A 202 602 158 HOH HOH . H 7 HOH A 203 603 312 HOH HOH . H 7 HOH A 204 604 299 HOH HOH . H 7 HOH A 205 605 209 HOH HOH . H 7 HOH A 206 606 273 HOH HOH . H 7 HOH A 207 607 323 HOH HOH . H 7 HOH A 208 608 114 HOH HOH . H 7 HOH A 209 609 298 HOH HOH . I 7 HOH B 1 201 157 HOH HOH . I 7 HOH B 2 202 238 HOH HOH . I 7 HOH B 3 203 142 HOH HOH . I 7 HOH B 4 204 107 HOH HOH . I 7 HOH B 5 205 106 HOH HOH . I 7 HOH B 6 206 174 HOH HOH . I 7 HOH B 7 207 13 HOH HOH . I 7 HOH B 8 208 224 HOH HOH . I 7 HOH B 9 209 26 HOH HOH . I 7 HOH B 10 210 6 HOH HOH . I 7 HOH B 11 211 44 HOH HOH . I 7 HOH B 12 212 98 HOH HOH . I 7 HOH B 13 213 182 HOH HOH . I 7 HOH B 14 214 17 HOH HOH . I 7 HOH B 15 215 30 HOH HOH . I 7 HOH B 16 216 82 HOH HOH . I 7 HOH B 17 217 118 HOH HOH . I 7 HOH B 18 218 134 HOH HOH . I 7 HOH B 19 219 151 HOH HOH . I 7 HOH B 20 220 149 HOH HOH . I 7 HOH B 21 221 326 HOH HOH . I 7 HOH B 22 222 122 HOH HOH . I 7 HOH B 23 223 48 HOH HOH . I 7 HOH B 24 224 39 HOH HOH . I 7 HOH B 25 225 42 HOH HOH . I 7 HOH B 26 226 52 HOH HOH . I 7 HOH B 27 227 219 HOH HOH . I 7 HOH B 28 228 291 HOH HOH . I 7 HOH B 29 229 331 HOH HOH . I 7 HOH B 30 230 150 HOH HOH . I 7 HOH B 31 231 305 HOH HOH . I 7 HOH B 32 232 229 HOH HOH . I 7 HOH B 33 233 126 HOH HOH . I 7 HOH B 34 234 206 HOH HOH . I 7 HOH B 35 235 335 HOH HOH . I 7 HOH B 36 236 269 HOH HOH . I 7 HOH B 37 237 197 HOH HOH . I 7 HOH B 38 238 283 HOH HOH . I 7 HOH B 39 239 84 HOH HOH . I 7 HOH B 40 240 341 HOH HOH . I 7 HOH B 41 241 167 HOH HOH . I 7 HOH B 42 242 242 HOH HOH . I 7 HOH B 43 243 185 HOH HOH . I 7 HOH B 44 244 172 HOH HOH . I 7 HOH B 45 245 160 HOH HOH . I 7 HOH B 46 246 295 HOH HOH . I 7 HOH B 47 247 69 HOH HOH . I 7 HOH B 48 248 282 HOH HOH . I 7 HOH B 49 249 147 HOH HOH . I 7 HOH B 50 250 165 HOH HOH . I 7 HOH B 51 251 309 HOH HOH . I 7 HOH B 52 252 262 HOH HOH . I 7 HOH B 53 253 140 HOH HOH . I 7 HOH B 54 254 293 HOH HOH . I 7 HOH B 55 255 310 HOH HOH . I 7 HOH B 56 256 193 HOH HOH . I 7 HOH B 57 257 204 HOH HOH . I 7 HOH B 58 258 241 HOH HOH . I 7 HOH B 59 259 306 HOH HOH . I 7 HOH B 60 260 188 HOH HOH . I 7 HOH B 61 261 108 HOH HOH . I 7 HOH B 62 262 129 HOH HOH . I 7 HOH B 63 263 163 HOH HOH . J 7 HOH C 1 101 19 HOH HOH . J 7 HOH C 2 102 5 HOH HOH . J 7 HOH C 3 103 245 HOH HOH . J 7 HOH C 4 104 143 HOH HOH . J 7 HOH C 5 105 131 HOH HOH . J 7 HOH C 6 106 232 HOH HOH . J 7 HOH C 7 107 54 HOH HOH . J 7 HOH C 8 108 43 HOH HOH . J 7 HOH C 9 109 239 HOH HOH . J 7 HOH C 10 110 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . G 6 -1.529 37.802 7.505 1 37.09 ? C ACT 102 B 1 HETATM 2 O O ACT . . . G 6 -1.198 37.397 6.354 1 36.22 ? O ACT 102 B 1 HETATM 3 O OXT ACT . . . G 6 -0.714 38.466 8.209 1 33.53 ? OXT ACT 102 B 1 HETATM 4 C CH3 ACT . . . G 6 -2.918 37.481 8.05 1 25.54 ? CH3 ACT 102 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #