data_6VB8 # _model_server_result.job_id VdWIL1TO21ZokwP5TvsLiQ _model_server_result.datetime_utc '2024-11-24 15:09:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6VB8 # _exptl.entry_id 6VB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VB8 _cell.length_a 67.806 _cell.length_b 72.427 _cell.length_c 99.272 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc8 A OD1 ASP 19 A ASP 19 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc10 C CA CA . A CA 302 1_555 I O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 C CA CA . A CA 302 1_555 I O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc12 D MN MN . A MN 303 1_555 I O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc13 D MN MN . A MN 303 1_555 I O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VB8 _atom_sites.fract_transf_matrix[1][1] 0.014748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 239 GOL GOL . C 3 CA A 1 302 240 CA CA . D 4 MN A 1 303 241 MN MN . E 5 CL A 1 304 242 CL CL . F 5 CL A 1 305 243 CL CL . G 6 DBB A 1 306 301 DBB DBB . H 7 IAC A 1 307 401 IAC IAC . I 8 HOH A 1 401 28 HOH HOH . I 8 HOH A 2 402 26 HOH HOH . I 8 HOH A 3 403 35 HOH HOH . I 8 HOH A 4 404 12 HOH HOH . I 8 HOH A 5 405 3 HOH HOH . I 8 HOH A 6 406 5 HOH HOH . I 8 HOH A 7 407 2 HOH HOH . I 8 HOH A 8 408 42 HOH HOH . I 8 HOH A 9 409 15 HOH HOH . I 8 HOH A 10 410 17 HOH HOH . I 8 HOH A 11 411 39 HOH HOH . I 8 HOH A 12 412 11 HOH HOH . I 8 HOH A 13 413 9 HOH HOH . I 8 HOH A 14 414 6 HOH HOH . I 8 HOH A 15 415 8 HOH HOH . I 8 HOH A 16 416 41 HOH HOH . I 8 HOH A 17 417 23 HOH HOH . I 8 HOH A 18 418 18 HOH HOH . I 8 HOH A 19 419 7 HOH HOH . I 8 HOH A 20 420 51 HOH HOH . I 8 HOH A 21 421 24 HOH HOH . I 8 HOH A 22 422 45 HOH HOH . I 8 HOH A 23 423 16 HOH HOH . I 8 HOH A 24 424 4 HOH HOH . I 8 HOH A 25 425 25 HOH HOH . I 8 HOH A 26 426 30 HOH HOH . I 8 HOH A 27 427 1 HOH HOH . I 8 HOH A 28 428 27 HOH HOH . I 8 HOH A 29 429 22 HOH HOH . I 8 HOH A 30 430 10 HOH HOH . I 8 HOH A 31 431 19 HOH HOH . I 8 HOH A 32 432 36 HOH HOH . I 8 HOH A 33 433 14 HOH HOH . I 8 HOH A 34 434 38 HOH HOH . I 8 HOH A 35 435 31 HOH HOH . I 8 HOH A 36 436 34 HOH HOH . I 8 HOH A 37 437 13 HOH HOH . I 8 HOH A 38 438 21 HOH HOH . I 8 HOH A 39 439 50 HOH HOH . I 8 HOH A 40 440 48 HOH HOH . I 8 HOH A 41 441 49 HOH HOH . I 8 HOH A 42 442 56 HOH HOH . I 8 HOH A 43 443 58 HOH HOH . I 8 HOH A 44 444 32 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.599 _atom_site.Cartn_y 24.791 _atom_site.Cartn_z 19.02 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #