data_6VB8 # _model_server_result.job_id O4BJaimgA-2NItvAP2Nwww _model_server_result.datetime_utc '2024-11-24 14:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 6VB8 # _exptl.entry_id 6VB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.184 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1H-INDOL-3-YLACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VB8 _cell.length_a 67.806 _cell.length_b 72.427 _cell.length_c 99.272 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc8 A OD1 ASP 19 A ASP 19 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc10 C CA CA . A CA 302 1_555 I O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 C CA CA . A CA 302 1_555 I O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc12 D MN MN . A MN 303 1_555 I O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc13 D MN MN . A MN 303 1_555 I O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C10 H9 N O2' _chem_comp.formula_weight 175.184 _chem_comp.id IAC _chem_comp.mon_nstd_flag . _chem_comp.name '1H-INDOL-3-YLACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INDOLE ACETIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N IAC sing 167 n y C C1 IAC doub 168 n y C C5 IAC sing 169 n y C1 C7 IAC sing 170 n y C1 C2 IAC sing 171 n y C2 C3 IAC doub 172 n y C2 H2 IAC sing 173 n n C3 C4 IAC sing 174 n y C3 H3 IAC sing 175 n n C4 C5 IAC doub 176 n y C4 H4 IAC sing 177 n n C5 H5 IAC sing 178 n n C7 C17 IAC sing 179 n n C7 C8 IAC doub 180 n y C8 N IAC sing 181 n y C8 H8 IAC sing 182 n n C17 C18 IAC sing 183 n n C17 H171 IAC sing 184 n n C17 H172 IAC sing 185 n n C18 O3 IAC doub 186 n n C18 O2 IAC sing 187 n n N HN IAC sing 188 n n O2 HO2 IAC sing 189 n n # _atom_sites.entry_id 6VB8 _atom_sites.fract_transf_matrix[1][1] 0.014748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 239 GOL GOL . C 3 CA A 1 302 240 CA CA . D 4 MN A 1 303 241 MN MN . E 5 CL A 1 304 242 CL CL . F 5 CL A 1 305 243 CL CL . G 6 DBB A 1 306 301 DBB DBB . H 7 IAC A 1 307 401 IAC IAC . I 8 HOH A 1 401 28 HOH HOH . I 8 HOH A 2 402 26 HOH HOH . I 8 HOH A 3 403 35 HOH HOH . I 8 HOH A 4 404 12 HOH HOH . I 8 HOH A 5 405 3 HOH HOH . I 8 HOH A 6 406 5 HOH HOH . I 8 HOH A 7 407 2 HOH HOH . I 8 HOH A 8 408 42 HOH HOH . I 8 HOH A 9 409 15 HOH HOH . I 8 HOH A 10 410 17 HOH HOH . I 8 HOH A 11 411 39 HOH HOH . I 8 HOH A 12 412 11 HOH HOH . I 8 HOH A 13 413 9 HOH HOH . I 8 HOH A 14 414 6 HOH HOH . I 8 HOH A 15 415 8 HOH HOH . I 8 HOH A 16 416 41 HOH HOH . I 8 HOH A 17 417 23 HOH HOH . I 8 HOH A 18 418 18 HOH HOH . I 8 HOH A 19 419 7 HOH HOH . I 8 HOH A 20 420 51 HOH HOH . I 8 HOH A 21 421 24 HOH HOH . I 8 HOH A 22 422 45 HOH HOH . I 8 HOH A 23 423 16 HOH HOH . I 8 HOH A 24 424 4 HOH HOH . I 8 HOH A 25 425 25 HOH HOH . I 8 HOH A 26 426 30 HOH HOH . I 8 HOH A 27 427 1 HOH HOH . I 8 HOH A 28 428 27 HOH HOH . I 8 HOH A 29 429 22 HOH HOH . I 8 HOH A 30 430 10 HOH HOH . I 8 HOH A 31 431 19 HOH HOH . I 8 HOH A 32 432 36 HOH HOH . I 8 HOH A 33 433 14 HOH HOH . I 8 HOH A 34 434 38 HOH HOH . I 8 HOH A 35 435 31 HOH HOH . I 8 HOH A 36 436 34 HOH HOH . I 8 HOH A 37 437 13 HOH HOH . I 8 HOH A 38 438 21 HOH HOH . I 8 HOH A 39 439 50 HOH HOH . I 8 HOH A 40 440 48 HOH HOH . I 8 HOH A 41 441 49 HOH HOH . I 8 HOH A 42 442 56 HOH HOH . I 8 HOH A 43 443 58 HOH HOH . I 8 HOH A 44 444 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C IAC . . . H 7 -0.487 5.046 15.091 1 72.49 ? C IAC 307 A 1 HETATM 2 C C1 IAC . . . H 7 0.676 5.012 15.891 1 72.46 ? C1 IAC 307 A 1 HETATM 3 C C2 IAC . . . H 7 1.114 6.195 16.496 1 70.45 ? C2 IAC 307 A 1 HETATM 4 C C3 IAC . . . H 7 0.397 7.352 16.29 1 70.39 ? C3 IAC 307 A 1 HETATM 5 C C4 IAC . . . H 7 -0.749 7.361 15.497 1 72.52 ? C4 IAC 307 A 1 HETATM 6 C C5 IAC . . . H 7 -1.212 6.218 14.886 1 72.31 ? C5 IAC 307 A 1 HETATM 7 C C7 IAC . . . H 7 1.152 3.658 15.88 1 73.3 ? C7 IAC 307 A 1 HETATM 8 C C8 IAC . . . H 7 0.286 2.955 15.094 1 71.79 ? C8 IAC 307 A 1 HETATM 9 C C17 IAC . . . H 7 2.358 3.122 16.58 1 73.63 ? C17 IAC 307 A 1 HETATM 10 C C18 IAC . . . H 7 3.505 2.849 15.616 1 73.76 ? C18 IAC 307 A 1 HETATM 11 N N IAC . . . H 7 -0.7 3.777 14.62 1 72.21 ? N IAC 307 A 1 HETATM 12 O O2 IAC . . . H 7 4.189 1.831 15.819 1 75.54 ? O2 IAC 307 A 1 HETATM 13 O O3 IAC . . . H 7 3.675 3.661 14.687 1 73.64 ? O3 IAC 307 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #